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GitHub / AmirAlavi / sc-alignment-benchmarking
Supporting data and benchmarking software for our SCIPR paper. (Under Construction)
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/AmirAlavi%2Fsc-alignment-benchmarking
Stars: 1
Forks: 0
Open Issues: 3
License: None
Language: Jupyter Notebook
Repo Size: 45.6 MB
Dependencies:
333
Created: about 5 years ago
Updated: 10 months ago
Last pushed: almost 4 years ago
Last synced: 10 months ago
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Dependencies
data/environment.yml
conda
- _r-mutex 1.0.0
- attrs 19.1.0
- backcall 0.1.0
- bleach 3.1.0
- ca-certificates 2019.5.15
- certifi 2019.6.16
- colorama 0.4.1
- colormath 3.0.0
- decorator 4.4.0
- defusedxml 0.6.0
- entrypoints 0.3
- intel-openmp 2019.4
- ipykernel 5.1.2
- ipython 7.8.0
- ipython_genutils 0.2.0
- jedi 0.15.1
- jinja2 2.10.1
- jsonschema 3.0.2
- jupyter_client 5.3.1
- jupyter_core 4.5.0
- libblas 3.8.0
- libcblas 3.8.0
- liblapack 3.8.0
- libsodium 1.0.16
- libssh2 1.8.2
- m2w64-bwidget 1.9.10
- m2w64-bzip2 1.0.6
- m2w64-expat 2.1.1
- m2w64-fftw 3.3.4
- m2w64-flac 1.3.1
- m2w64-gcc-libgfortran 5.3.0
- m2w64-gcc-libs 5.3.0
- m2w64-gcc-libs-core 5.3.0
- m2w64-gettext 0.19.7
- m2w64-gmp 6.1.0
- m2w64-gsl 2.1
- m2w64-libiconv 1.14
- m2w64-libjpeg-turbo 1.4.2
- m2w64-libogg 1.3.2
- m2w64-libpng 1.6.21
- m2w64-libsndfile 1.0.26
- m2w64-libsodium 1.0.10
- m2w64-libtiff 4.0.6
- m2w64-libvorbis 1.3.5
- m2w64-libwinpthread-git 5.0.0.4634.697f757
- m2w64-libxml2 2.9.3
- m2w64-mpfr 3.1.4
- m2w64-openblas 0.2.19
- m2w64-pcre 8.38
- m2w64-speex 1.2rc2
- m2w64-speexdsp 1.2rc3
- m2w64-tcl 8.6.5
- m2w64-tk 8.6.5
- m2w64-tktable 2.10
- m2w64-wineditline 2.101
- m2w64-xz 5.2.2
- m2w64-zeromq 4.1.4
- m2w64-zlib 1.2.8
- markupsafe 1.1.1
- mistune 0.8.4
- mkl 2019.4
- msys2-conda-epoch 20160418
- nbconvert 5.5.0
- nbformat 4.4.0
- networkx 2.3
- notebook 6.0.0
- numpy 1.17.1
- openssl 1.1.1c
- pandoc 2.2.3.2
- pandocfilters 1.4.2
- parso 0.5.1
- pickleshare 0.7.5
- pip 19.2.2
- prometheus_client 0.7.1
- prompt_toolkit 2.0.9
- pygments 2.4.2
- pyrsistent 0.14.11
- python 3.7.4
- python-dateutil 2.8.0
- pywinpty 0.5.5
- pyzmq 18.1.0
- r-ape 5.3
- r-askpass 1.0
- r-assertthat 0.2.1
- r-backports 1.1.4
- r-base 3.6.1
- r-base64enc 0.1_3
- r-bh 1.69.0_1
- r-bibtex 0.4.2
- r-biocmanager 1.30.4
- r-bitops 1.0_6
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- r-broom 0.5.2
- r-callr 3.2.0
- r-caret 6.0_83
- r-catools 1.17.1.2
- r-cellranger 1.1.0
- r-class 7.3_15
- r-cli 1.1.0
- r-clipr 0.6.0
- r-clisymbols 1.2.0
- r-cluster 2.0.8
- r-codetools 0.2_16
- r-colorspace 1.4_1
- r-cowplot 1.0.0
- r-crayon 1.3.4
- r-crosstalk 1.0.0
- r-curl 3.3
- r-data.table 1.12.2
- r-dbi 1.0.0
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- r-desc 1.2.0
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- r-dichromat 2.0_0
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- r-ellipsis 0.1.0
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- r-evaluate 0.13
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- r-fnn 1.1.3
- r-forcats 0.4.0
- r-foreach 1.4.4
- r-foreign 0.8_71
- r-formatr 1.6
- r-fs 1.2.7
- r-future 1.14.0
- r-future.apply 1.3.0
- r-gbrd 0.4_11
- r-gdata 2.18.0
- r-generics 0.0.2
- r-ggplot2 3.1.1
- r-ggrepel 0.8.1
- r-ggridges 0.5.1
- r-gh 1.0.1
- r-git2r 0.25.2
- r-glmnet 2.0_16
- r-globals 0.12.4
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- r-gtools 3.8.1
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- r-rcpproll 0.3.0
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- r-readr 1.3.1
- r-readxl 1.3.1
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- r-recommended 3.6.0
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- r-remotes 2.0.4
- r-repr 0.19.2
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- r-reshape2 1.4.3
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- r-spatial 7.3_11
- r-squarem 2017.10_1
- r-stringi 1.4.3
- r-stringr 1.4.0
- r-survival 2.44_1.1
- r-sys 3.2
- r-tibble 2.1.1
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- r-tidyselect 0.2.5
- r-tidyverse 1.2.1
- r-timedate 3043.102
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- r-ttr 0.23_4
- r-usethis 1.5.0
- r-utf8 1.1.4
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- r-uwot 0.1.3
- r-viridislite 0.3.0
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- r-withr 2.1.2
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- r-zoo 1.8_5
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- setuptools 41.0.1
- six 1.12.0
- spectra 0.0.11
- sqlite 3.29.0
- terminado 0.8.2
- testpath 0.4.2
- tornado 6.0.3
- traitlets 4.3.2
- vc 14.1
- vs2015_runtime 14.15.26706
- wcwidth 0.1.7
- webencodings 0.5.1
- wheel 0.33.4
- wincertstore 0.2
- winpty 0.4.3
- zeromq 4.3.1
- zlib 1.2.11
environment.yml
pypi
- absl-py ==0.7.1
- astor ==0.7.1
- chardet ==3.0.4
- future ==0.17.1
- gast ==0.2.2
- gitdb2 ==2.0.5
- gitpython ==2.1.11
- grpcio ==1.20.0
- idna ==2.8
- keras-applications ==1.0.7
- keras-preprocessing ==1.0.9
- loompy ==2.0.17
- markdown ==3.1
- mnnpy ==0.1.9.5
- mock ==2.0.0
- nbdime ==1.0.5
- pbr ==5.1.3
- protobuf ==3.7.1
- requests ==2.21.0
- scalign ==0.0.1
- smmap2 ==2.0.5
- tb-nightly ==1.14.0a20190519
- tensorboard ==1.13.1
- tensorboardx ==1.6
- tensorflow ==1.13.1
- tensorflow-estimator ==1.13.0
- termcolor ==1.1.0
- torch ==1.1.0
- torchvision ==0.2.2
- tqdm ==4.32.1
- urllib3 ==1.24.2
- werkzeug ==0.15.2