Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: r-highr

Syntax Highlighting for R Source Code
4 versions
Latest release: over 1 year ago
3 dependent packages

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/r-highr

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/yihui%2Fhighr

Dependent Repos 50

rjof/coronavirus_dashboard_mexico
Fork of https://github.com/RamiKrispin/coronavirus_dashboard with minimal tweaks for Mexico
  • 0.8 environment.yml

Size: 12.8 MB - Last synced: 5 months ago - Pushed: over 1 year ago

rjof/rjof.github.io
Personal projects
  • 0.8 docs/environment.yml
  • 0.8 environment.yml

Size: 38.5 MB - Last synced: 5 months ago - Pushed: over 1 year ago

ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
  • 0.8 containers/r-3.6.1/environment.yml

Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago

FORCOLAB-UofT/INFOX
This is a prototype for overview of GitHub forks.
  • 0.6 environment.yaml

Size: 14.3 MB - Last synced: about 2 months ago - Pushed: 3 months ago

brucemoran/tumour_only
Tumour-only DNA sequencing analysis
  • 0.9 environment.yaml

Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

btmartin721/ClineHelpR
Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
  • 0.9 environment.yml

Size: 93.4 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

jseeman/publication-supplements
Code and data for research replication and reuse
  • 0.8 2022_arsia/environment.yaml

Size: 511 KB - Last synced: about 1 year ago - Pushed: about 2 years ago

villegar/DoGE
Differential Gene Expression Analysis Pipeline
  • 0.8.* environment.yml

Size: 16 MB - Last synced: 10 months ago - Pushed: almost 3 years ago

russHyde/russ-hyde
Public content for my blog
  • 0.8.* envs/environment.yaml

Size: 5.17 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

InfantLab/little-drummers
  • 0.8 analysis/environment.yml

Size: 1.04 GB - Last synced: about 1 year ago - Pushed: almost 2 years ago

vaqm2/custom_gwas
Python Code using CyVCF2 to run custom GWAS models on imputed VCF files
  • 0.9.* environment.yml

Size: 958 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

BioinfoNet/TeachingJupyterNotebooks
Training materials for the Open Science Workshop held in Nariobi
  • 0.6 environment.yml

Size: 16 MB - Last synced: about 1 year ago - Pushed: over 5 years ago

moj-analytical-services/DefCalc
The deflator calculator.
  • 0.8 environment.yml

Size: 4.83 MB - Last synced: 10 months ago - Pushed: 10 months ago

Wiselab2/NGPINT
  • 0.5.1 environment.yml

Size: 300 MB - Last synced: 7 months ago - Pushed: over 2 years ago

davidecolla/semantic_coherence_markers
  • 0.8 environment.yml

Size: 390 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

davidlevybooth/Rhodococcus_Transcriptomics
Rhodococcus Transcriptomic Pipeline
  • 0.6.* environment.yaml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: about 5 years ago

nlm-irp-jianglab/Evolink
:palm_tree: A Phylogenetic Approach for Rapid Identification of Genotype-Phenotype Associations in Large-scale Microbial Multi-species Data
  • 0.9 environment.yml

Size: 251 MB - Last synced: 9 months ago - Pushed: 9 months ago

GWeindel/lecture_R
A really short introduction (4 hours lecture) for psychology doctoral students at Aix Marseille University.
  • 0.9 environment.yml

Size: 4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

ajayago/NCMF_bioinformatics
  • 0.8 CMF/environment.yml

Size: 202 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

kelly-sovacool/meta-repo
A meta-repository to organize my public projects.
  • 0.8 config/environment.yml

Size: 33.2 MB - Last synced: 9 months ago - Pushed: 9 months ago

jamesfitton/cxr
Intertidal water occurrence generator from Sentinel 2 satellite data and Google Earth Engine
  • 0.9 environment.yml

Size: 1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

yangmqglobe/dapipe
自动化的 ATAC-Seq 分析流程
  • 0.9.* environment.yml

Size: 193 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

aw236/boilerplate_code
best functions
  • 0.8.* environment.yml

Size: 380 KB - Last synced: 27 days ago - Pushed: 12 months ago

andrealauria104/ngsRtools
A Suite of R Packages for NGS-based Epigenomic Data Analysis.
  • 0.8.* data/environment.yml

Size: 714 KB - Last synced: 27 days ago - Pushed: about 1 year ago

sadamov/pollenmaps
Creating some nice maps in R
  • 0.9 environment.yml

Size: 79.6 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

XinyanHe/INFOX Fork of FORCOLAB-UofT/INFOX
This is a prototype for overview of GitHub forks.
  • 0.6 environment.yaml

Size: 12.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

sadamov/phenology_curve_fitting
Fitting of phenological season description curves to historical pollen measurements.
  • 0.9 environment.yml

Size: 53.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

greenelab/2022-cf-sputum
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways
  • 0.9 environment.yml

Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago

wrightdw/COG-UK-ME
COG-UK Mutation Explorer
  • 0.9 environment.yml

Size: 105 MB - Last synced: 3 months ago - Pushed: 3 months ago

naim-panjwani/LocusFocus
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
  • 0.8 environments/environment.yml

Size: 76.7 MB - Last synced: 5 days ago - Pushed: about 1 year ago

kevinpryan/caf-subtype-analysis
  • 0.9 environment.yml

Size: 56.9 MB - Last synced: 8 months ago - Pushed: 8 months ago

mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow
  • 0.9 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

gonzalosm98/scRNA-SeqAnalysis
  • 0.9 environment.yml

Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

dib-lab/elvers
(formerly eelpond) an automated RNA-Seq workflow system
  • 0.6.* elvers/rules/edgeR/environment.yml

Size: 106 MB - Last synced: 4 months ago - Pushed: over 3 years ago

rahulbhatiak/aml
Files / Projects/ Notebooks relating to Advanced Machine Learning Course taken Fall 2020
  • 0.8 environment.yaml

Last synced: about 1 year ago

LankyCyril/merip-seq-2019
  • 0.8 environment.yaml

Size: 531 KB - Last synced: over 1 year ago

cjc77/Fogg-Lab-RNA-Seq-analysis
Preliminary analysis and informatics for TCGA gynecological cancer data
  • 0.8.* environment.yml

Size: 61.3 MB - Last synced: 4 months ago - Pushed: over 1 year ago

mfreitas/docker_dev_image
  • 0.7 environment.yml

Last synced: over 1 year ago

mfreitas/dsclub_jupyter
Jupyter docker image
  • 0.7 environment.yml

Last synced: over 1 year ago

athompson1991/crypto-project
Final project for machine learning class
  • 0.7 environment.yml

Size: 1.68 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

dieterich-lab/ImmunOMICS
  • 0.9 environment.yml

Size: 27.6 MB - Last synced: 2 months ago - Pushed: about 1 year ago

liaoherui/GDmicro
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.
  • 0.9 environment.yaml

Size: 3.57 MB - Last synced: 22 days ago - Pushed: about 2 months ago

gagneurlab/transmicron
  • 0.9.* environment.yml

Size: 16.7 MB - Last synced: 5 days ago - Pushed: over 1 year ago

samwitham/PromoterArchitecture
Arabidopsis thaliana promoter architecture analysis pipeline
  • 0.8 environment.yml

Size: 187 MB - Last synced: 7 months ago - Pushed: 9 months ago

SteMIDIfactory/P-DOR
Quick and easy outbreak reconstruction pipeline
  • 0.9 environment.yml

Size: 37.7 MB - Last synced: 3 months ago - Pushed: 8 months ago

mjaquiery/genetics-snakemake
Snakemake workflow for handling PRS scores and relatedness calculations for human genetic data from ALSPAC.
  • 0.9 workflow/envs/environment.yaml

Size: 1.44 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

paezha/PyERT-BLACK
Capstone project for course 4G06
  • 0.9 environment.yml

Size: 23.2 MB - Last synced: 11 days ago - Pushed: about 1 year ago

phbradley/tcr-gwas
Collaboration to find genetic variation associated with TCR repertoire differences
  • 0.9 environment.yml

Size: 176 MB - Last synced: 26 days ago - Pushed: over 2 years ago

magdalenarussell/mechanistic-trimming
Collaboration to identify sequence-level determinants of nucleotide trimming during V(D)J recombination
  • 0.9 environment.yml

Size: 185 MB - Last synced: 20 days ago - Pushed: 20 days ago

doku/actions_test
  • 0.8 environment.yml

Size: 2.19 MB - Last synced: 9 months ago - Pushed: over 3 years ago

jacobschwan/conda-rstudio
RStudio Server with conda pacakge management
  • 0.8 environment.yml

Size: 22.5 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

neavemj/mappd
Metagenomic Analysis Pipeline for Pathogen Discovery
  • 0.8 environment.yaml

Size: 924 KB - Last synced: 8 months ago - Pushed: 8 months ago

russHyde/bfx_201909
Statistical Bioinformatics presentation
  • 0.8.* envs/environment.yml

Size: 327 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

AmirAlavi/sc-alignment-benchmarking
Supporting data and benchmarking software for our SCIPR paper. (Under Construction)
  • 0.8 data/environment.yml

Size: 45.6 MB - Last synced: 10 months ago - Pushed: almost 4 years ago

IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020
  • 0.8 environment.yml

Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago

rpolicastro/barcode-generator
  • 0.8 SINGULARITY/environment.yml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: almost 5 years ago

mapcloud/phusion-jupyterlab
  • 0.6 environment.yml

Size: 4.88 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago

storm-platform/storm-gallery
A gallery of interesting codes based on Storm Platform technologies.
  • 0.9.* applications/bdc-article/compendium/environment.yml
  • 0.9.* applications/deforestation-detection/compendium/fraction-classification/environment.yml
  • 0.9.* applications/sits-article/compendium/environment.yml

Size: 42.7 MB - Last synced: 24 days ago - Pushed: over 1 year ago

micaelamccall/nonverbal-behavior-FA
Habits of Non-verbal Intimacy: reducing number of dimensions using factor analysis
  • 0.8 environment.yml

Size: 17.1 MB - Last synced: 7 months ago - Pushed: over 4 years ago

maizeumn/grn
Maize Gene regulatory network (MaizeGRN)
  • 0.8.* environment.yml

Size: 24.1 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

vfonov/re_mtl
  • environment.yml

Size: 16.2 MB - Last synced: about 1 year ago - Pushed: about 4 years ago

davidlevybooth/Praxis
  • 0.6.* envs/environment.yaml

Size: 137 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

joaopalmeiro/r-playground
Some experiments with R.
  • 0.8.* clifford-attractor/environment.yml

Size: 4.08 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

alexetalbott/python_analysis_demo
a brief analysis of dummy delivery data in Python with Folium maps
  • 0.8 environment.yml

Size: 1.22 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago

giorgioangel/evc
Official repository of the paper "An Offline Risk-aware Policy Selection Method for Bayesian Markov Decision Processes"
  • 0.9 environment.yml

Size: 58.6 KB - Last synced: 9 months ago - Pushed: almost 2 years ago

yangmqglobe/depipe
自动化的 ChIP-Seq 分析流程
  • 0.9.* environment.yml

Size: 16.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

nerettilab/scRNA_seq
Utilities scripts for the analysis of single cell transcriptomics
  • 0.8 environment.yml

Size: 23.4 KB - Last synced: 5 months ago - Pushed: almost 3 years ago

SystemsBiologist/PSCAN
  • 0.8 environment.yml

Size: 14.2 MB - Last synced: about 1 month ago - Pushed: over 4 years ago

jhgille2/Transcriptome-length-discrepency-tool
Some code to (hopefully) help to resolve an issue where sequences in a BAM/SAM header have a different length indicated than what is indicated in both a gtf file and transcriptome file used in a common pipeline
  • 0.10 environment.yml

Size: 32.2 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

jhgille2/rna_seq_pipeline_template
WIP reproducible pipeline for rna seq differential expression analysis
  • 0.10 environment.yml

Size: 77.1 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

zia-foisal/reproducible_drought_index
A repository to practice reproducible research practices while studing the state of the drought around the world
  • 0.9 environment.yaml

Size: 10.7 KB - Last synced: 12 months ago - Pushed: over 1 year ago

achmand/datascience-brexit
Case-study set out to statistically test whether any Brexit major event has an impact on various financial markets
  • 0.7 src/environment.yml

Size: 13.8 MB - Last synced: about 1 year ago - Pushed: almost 5 years ago

qbicsoftware/r-container-lib
A collection of project-related Dockerfiles for a controlled R environment with defined R packages
  • 0.6 projects/QTEST/environment.yml

Size: 150 KB - Last synced: 2 days ago - Pushed: about 3 years ago

GallupGovt/ngs2
DARPA Next Generation Social Science (NGS2)
  • 0.8 cycle3/Boomtown/Analysis/environment.yaml
  • 0.8 cycle4/Boomtown/Analysis/environment.yaml

Size: 32.8 MB - Last synced: 8 months ago - Pushed: 12 months ago

crlero/snakemake-tutorial
  • 0.9.* handson/workflow/environment.yaml

Size: 3.39 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

Jacobog02/Maslenlab_Thesis
Thesis code repository for analysis of Illumina Bisulfite Sequencing data.
  • 0.8.* env/environment.yml

Size: 2.25 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

kelly-sovacool/advent-of-code
My solutions to the Advent of Code puzzles.
  • 0.9 environment.yml

Size: 132 KB - Last synced: 13 days ago - Pushed: over 1 year ago

TeamPerie/Report_Daphne Fork of dvginneken/Reproduce_Thesis_InstitutCurie
  • 0.10 environment.yml

Size: 32.6 MB - Last synced: 10 months ago - Pushed: 10 months ago

davidecarlson/Snakemake_diff_gene_expr
Differential Gene Expression with Snakemake
  • 0.8 environment.yml

Size: 37.1 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

yarikoptic/example-notebooks-1 Fork of dandi/example-notebooks
  • 0.10 000039/AllenInstitute/environment.yml

Size: 16.1 MB - Last synced: 10 months ago - Pushed: 10 months ago

sebsciarra/ds_project
  • 0.10.* environment.yml

Size: 80.1 KB - Last synced: 9 months ago - Pushed: 9 months ago

kylestanley1313/ffa-p1
A repository for code related to the first iteration of functional factor analysis (FFA).
  • 0.10.* environment.yml

Size: 1.17 MB - Last synced: 27 days ago - Pushed: 6 months ago

ministryofjustice/occupeye-shiny-app
• This repository is defined and managed in Terraform
  • 0.7 environment.yml

Size: 488 KB - Last synced: about 1 month ago - Pushed: 6 months ago

bionetslab/ALS_MELC_Data_Analysis
  • 0.8 environment.yml

Size: 256 MB - Last synced: 5 months ago - Pushed: 5 months ago

robert-altwasser/umi-processing
  • 0.9 env/environment.yml

Size: 340 KB - Last synced: 5 months ago - Pushed: 6 months ago

Mye-InfoBank/SIMBA
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.
  • 0.10 docker/rpy/environment.yml

Size: 981 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

nathan-adeyemi/Inpatient-Bed-Allocation-Optimization
  • 0.10.* environment.yaml

Size: 8.22 MB - Last synced: 4 months ago - Pushed: 4 months ago

Kenneth-Mitchell/HMC-Thesis
  • 0.10 environment.yml

Size: 8.85 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

fdu-wangfeilab/stDiff
A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.
  • 0.8 environment.yml

Size: 268 MB - Last synced: about 8 hours ago - Pushed: 2 months ago

quevedor2/mini_projects
Repository for mini projects that don't warrant a repo of their own
  • 0.9 PDAC_AhR/envs/environment.yaml

Size: 657 KB - Last synced: 11 days ago - Pushed: 12 days ago

WenfeiY/P.patens_geno_design
Python and R script for Physcomitrium patens genome design
  • 0.10 environment.yml

Size: 865 KB - Last synced: about 2 months ago - Pushed: about 2 months ago

is-the-biologist/QC_long_reads
  • 0.10 workflow/envs/environment.yml

Size: 157 MB - Last synced: 18 days ago - Pushed: 18 days ago

a-hr/pol2speed_pipeline
  • 0.10 environment.yaml

Size: 15.9 MB - Last synced: about 8 hours ago - Pushed: about 9 hours ago

SteinPanyu/IndependentReproducibility
  • 0.10 environment.yaml

Size: 20.2 MB - Last synced: 7 days ago - Pushed: 7 days ago

dandi/example-notebooks
  • 0.10 000039/AllenInstitute/environment.yml

Size: 57.5 MB - Last synced: about 24 hours ago - Pushed: 1 day ago