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GitHub / liaoherui / GDmicro

GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/liaoherui%2FGDmicro

Stars: 7
Forks: 0
Open Issues: 1

License: mit
Language: Python
Repo Size: 3.57 MB
Dependencies: 291

Created: over 2 years ago
Updated: 21 days ago
Last pushed: about 2 months ago
Last synced: 21 days ago

Topics: deep-learning, domain-adaptation, gcn, human-gut, metagenomics, microbiome-data

Files

Readme

Dependencies

environment.yaml conda

_libgcc_mutex 0.1
_openmp_mutex 4.5
_r-mutex 1.0.1
binutils_impl_linux-64 2.36.1
binutils_linux-64 2.36
bioconductor-biobase 2.46.0
bioconductor-biocgenerics 0.32.0
bioconductor-biomformat 1.14.0
bioconductor-biostrings 2.54.0
bioconductor-iranges 2.20.0
bioconductor-multtest 2.42.0
bioconductor-phyloseq 1.30.0
bioconductor-rhdf5 2.30.0
bioconductor-rhdf5lib 1.8.0
bioconductor-s4vectors 0.24.0
bioconductor-siamcat 1.6.0
bioconductor-xvector 0.26.0
bioconductor-zlibbioc 1.32.0
blas 1.0
brotlipy 0.7.0
bwidget 1.9.14
bzip2 1.0.8
ca-certificates 2022.9.24
cairo 1.16.0
certifi 2022.9.24
cffi 1.14.4
charset-normalizer 2.1.1
colorama 0.4.5
conda 4.12.0
conda-package-handling 1.9.0
cryptography 38.0.2
cudatoolkit 10.2.89
curl 7.68.0
cycler 0.11.0
dbus 1.13.6
decorator 5.1.1
expat 2.4.9
ffmpeg 4.3
fontconfig 2.14.0
freetype 2.12.1
fribidi 1.0.10
gcc_impl_linux-64 7.5.0
gcc_linux-64 7.5.0
gettext 0.21.1
gfortran_impl_linux-64 7.5.0
gfortran_linux-64 7.5.0
glib 2.66.3
gmp 6.2.1
gnutls 3.6.13
graphite2 1.3.13
gsl 2.5
gst-plugins-base 1.14.5
gstreamer 1.14.5
gxx_impl_linux-64 7.5.0
gxx_linux-64 7.5.0
harfbuzz 2.4.0
icu 64.2
idna 3.4
intel-openmp 2022.1.0
jpeg 9e
kernel-headers_linux-64 2.6.32
kiwisolver 1.4.4
krb5 1.16.4
lame 3.100
lcms2 2.12
ld_impl_linux-64 2.36.1
lerc 4.0.0
libblas 3.9.0
libcblas 3.9.0
libclang 9.0.1
libcurl 7.68.0
libdeflate 1.14
libedit 3.1.20191231
libffi 3.2.1
libgcc-ng 12.1.0
libgfortran-ng 7.5.0
libgfortran4 7.5.0
libglib 2.66.3
libgomp 12.1.0
libiconv 1.17
liblapack 3.9.0
libllvm9 9.0.1
libopenblas 0.3.12
libpng 1.6.38
libsolv 0.7.22
libsqlite 3.39.4
libssh2 1.10.0
libstdcxx-ng 12.1.0
libtiff 4.4.0
libuuid 2.32.1
libwebp-base 1.2.4
libxcb 1.13
libxkbcommon 0.10.0
libxml2 2.9.10
libzlib 1.2.12
make 4.3
matplotlib 3.1.2
matplotlib-base 3.1.2
mkl 2022.1.0
ncurses 6.3
nettle 3.6
networkx 2.4
nspr 4.32
nss 3.78
numpy 1.17.3
openh264 2.1.1
openjpeg 2.5.0
openssl 1.1.1q
pandas 1.0.1
pandoc 2.19.2
pango 1.42.4
pcre 8.45
pillow 9.2.0
pip 22.2.2
pixman 0.38.0
pthread-stubs 0.4
pycosat 0.6.3
pycparser 2.21
pyopenssl 22.1.0
pyparsing 3.0.9
pyqt 5.12.3
pysocks 1.7.1
python 3.7.3
python-dateutil 2.8.2
python_abi 3.7
pytorch 1.12.0
pytorch-mutex 1.0
pytz 2022.4
qt 5.12.5
r-ade4 1.7_16
r-ape 5.5
r-askpass 1.1
r-assertthat 0.2.1
r-backports 1.2.1
r-base 3.6.1
r-base64enc 0.1_3
r-bbmisc 1.11
r-beanplot 1.2
r-blob 1.2.1
r-brio 1.1.2
r-broom 0.7.6
r-callr 3.7.0
r-cellranger 1.1.0
r-checkmate 2.0.0
r-cli 2.5.0
r-clipr 0.7.1
r-cluster 2.1.0
r-codetools 0.2_18
r-colorspace 2.0_1
r-corrplot 0.88
r-cpp11 0.2.7
r-crayon 1.4.1
r-curl 4.3.1
r-data.table 1.14.0
r-dbi 1.1.1
r-dbplyr 2.1.1
r-desc 1.3.0
r-diffobj 0.3.4
r-digest 0.6.27
r-dplyr 1.0.6
r-ellipsis 0.3.2
r-evaluate 0.14
r-fansi 0.4.2
r-farver 2.1.0
r-fastmatch 1.1_0
r-forcats 0.5.1
r-foreach 1.5.1
r-fs 1.5.0
r-generics 0.1.0
r-ggplot2 3.3.3
r-glmnet 4.0_2
r-glue 1.4.2
r-gridbase 0.4_7
r-gridextra 2.3
r-gtable 0.3.0
r-haven 2.4.1
r-highr 0.9
r-hms 1.1.0
r-htmltools 0.5.1.1
r-httr 1.4.2
r-igraph 1.2.6
r-infotheo 1.2.0
r-isoband 0.2.4
r-iterators 1.0.13
r-jsonlite 1.7.2
r-knitr 1.33
r-labeling 0.4.2
r-lattice 0.20_44
r-liblinear 2.10_12
r-lifecycle 1.0.0
r-lubridate 1.7.10
r-magrittr 2.0.1
r-markdown 1.1
r-mass 7.3_54
r-matrix 1.3_3
r-matrixstats 0.58.0
r-mgcv 1.8_35
r-mime 0.10
r-mlr 2.19.0
r-modelr 0.1.8
r-munsell 0.5.0
r-nlme 3.1_150
r-openssl 1.4.4
r-parallelmap 1.5.0
r-paramhelpers 1.14
r-permute 0.9_5
r-pillar 1.6.1
r-pixmap 0.4_12
r-pkgconfig 2.0.3
r-pkgload 1.2.1
r-plyr 1.8.6
r-praise 1.0.0
r-prettyunits 1.1.1
r-proc 1.17.0.1
r-processx 3.5.2
r-progress 1.2.2
r-prroc 1.3.1
r-ps 1.6.0
r-purrr 0.3.4
r-r6 2.5.0
r-rcolorbrewer 1.1_2
r-rcpp 1.0.6
r-readr 1.4.0
r-readxl 1.3.1
r-rematch 1.0.1
r-rematch2 2.1.2
r-reprex 2.0.0
r-reshape2 1.4.4
r-rlang 0.4.11
r-rmarkdown 2.8
r-rprojroot 2.0.2
r-rstudioapi 0.13
r-rvest 1.0.0
r-scales 1.1.1
r-selectr 0.4_2
r-shape 1.4.6
r-sp 1.4_5
r-stringi 1.4.6
r-stringr 1.4.0
r-survival 3.2_11
r-sys 3.4
r-testthat 3.0.2
r-tibble 3.1.2
r-tidyr 1.1.3
r-tidyselect 1.1.1
r-tidyverse 1.2.1
r-tinytex 0.31
r-utf8 1.2.1
r-vctrs 0.3.8
r-vegan 2.5_6
r-viridislite 0.4.0
r-waldo 0.2.5
r-withr 2.4.2
r-xfun 0.23
r-xml 3.99_0.3
r-xml2 1.3.2
r-yaml 2.2.1
readline 8.1.2
requests 2.28.1
ruamel_yaml 0.15.80
scipy 1.5.2
sed 4.8
setuptools 59.8.0
six 1.16.0
sqlite 3.39.4
sysroot_linux-64 2.12
tk 8.6.12
tktable 2.10
torchaudio 0.12.0
torchvision 0.13.0
tornado 6.2
tqdm 4.64.1
typing-extensions 4.4.0
typing_extensions 4.4.0
urllib3 1.26.11
wheel 0.37.1
xorg-kbproto 1.0.7
xorg-libice 1.0.10
xorg-libsm 1.2.3
xorg-libx11 1.7.2
xorg-libxau 1.0.9
xorg-libxdmcp 1.1.3
xorg-libxext 1.3.4
xorg-libxrender 0.9.10
xorg-renderproto 0.11.1
xorg-xextproto 7.3.0
xorg-xproto 7.0.31
xz 5.2.6
yaml 0.2.5
zlib 1.2.12
zstd 1.5.2