Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: conda: r-isoband
isoband: An R package to generate contour lines and polygons.
7 versions
Latest release: over 1 year ago
3 dependent packages
View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/r-isoband
View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/r-lib%2Fisoband
Dependent Repos 47
brucemoran/tumour_only
Tumour-only DNA sequencing analysis- 0.2.4 environment.yaml
Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
btmartin721/ClineHelpR
Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables- 0.2.5 environment.yml
Size: 93.4 MB - Last synced: 7 months ago - Pushed: almost 2 years ago
villegar/DoGE
Differential Gene Expression Analysis Pipeline- 0.2.0.* environment.yml
Size: 16 MB - Last synced: 10 months ago - Pushed: almost 3 years ago
lfnothias/qiime2
- 0.2.3.* environment.yml
Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
krinsman/dissertation
Source code and Jupyter notebooks related to PhD dissertation.- 0.2.4 environment.yml
Last synced: over 1 year ago
vaqm2/custom_gwas
Python Code using CyVCF2 to run custom GWAS models on imputed VCF files- 0.2.5.* environment.yml
Size: 958 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
moj-analytical-services/DefCalc
The deflator calculator.- 0.2.1 environment.yml
Size: 4.83 MB - Last synced: 10 months ago - Pushed: 10 months ago
evoosa/16S_bacteria_detector
Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms- 0.2.1 src/environment.yml
Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
kutaslab/fitgrid
Multichannel event-related time-series regression modeling for EEG, MEG, and sensor array data- 0.2.4 binder/environment.yml
Size: 124 MB - Last synced: 26 days ago - Pushed: over 1 year ago
web-mev/mev-normalize
- 0.2.3 docker/environment.yml
Size: 16.6 KB - Last synced: 20 days ago - Pushed: 3 months ago
liaoherui/StrainScan
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers- 0.2.5 environment.yaml
Size: 56.7 MB - Last synced: 7 days ago - Pushed: about 1 month ago
nlm-irp-jianglab/Evolink
:palm_tree: A Phylogenetic Approach for Rapid Identification of Genotype-Phenotype Associations in Large-scale Microbial Multi-species Data- 0.2.5 environment.yml
Size: 251 MB - Last synced: 9 months ago - Pushed: 9 months ago
GWeindel/lecture_R
A really short introduction (4 hours lecture) for psychology doctoral students at Aix Marseille University.- 0.2.4 environment.yml
Size: 4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
happykhan/journal
Citation lists- 0.2.5 environment.yml
Size: 28 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
quadram-institute-bioscience/dadaist2
Dadaist2 đš Highway to R- 0.2.4 lab/class/environment.yml
Size: 39.4 MB - Last synced: 3 months ago - Pushed: 3 months ago
jamesfitton/cxr
Intertidal water occurrence generator from Sentinel 2 satellite data and Google Earth Engine- 0.2.5 environment.yml
Size: 1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
yangmqglobe/dapipe
èȘćšćç ATAC-Seq ćææ”çš- 0.2.4.* environment.yml
Size: 193 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
bokulich-lab/advanced-comp-bio-tutorial
Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022- 0.2.5 environment.yml
Size: 77.9 MB - Last synced: 12 months ago - Pushed: 12 months ago
SERVIR/mekong-swat-django
- 0.2.5 environment.yml
Size: 1.58 MB - Last synced: about 2 months ago - Pushed: over 1 year ago
sadamov/phenology_curve_fitting
Fitting of phenological season description curves to historical pollen measurements.- 0.2.5 environment.yml
Size: 53.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
omicsclass/biodocker
docker images for bioinformatics- 0.2.1.* ampliseq-q2/environment.yml
Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago
russHyde/mast-shiny
Notes / code from working through "Mastering Shiny". Written while running a R4DS bookclub- 0.2.3.* conda/environment.yml
Size: 154 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago
greenelab/2022-cf-sputum
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways- 0.2.4 environment.yml
Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago
wrightdw/COG-UK-ME
COG-UK Mutation Explorer- 0.2.4 environment.yml
Size: 105 MB - Last synced: 3 months ago - Pushed: 3 months ago
kevinpryan/caf-subtype-analysis
- 0.2.5 environment.yml
Size: 56.9 MB - Last synced: 8 months ago - Pushed: 8 months ago
mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow- 0.2.5 environment.yml
Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
gonzalosm98/scRNA-SeqAnalysis
- 0.2.5 environment.yml
Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
NatPombubpa/Qiime2_2022.8_binder
Qiime2_2022.8_binder test- 0.2.5.* environment.yml
Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago
cjc77/Fogg-Lab-RNA-Seq-analysis
Preliminary analysis and informatics for TCGA gynecological cancer data- 0.2.3.* environment.yml
Size: 61.3 MB - Last synced: 4 months ago - Pushed: over 1 year ago
EpiDiverse/dmr
The EpiDiverse Differentially Methylated Regions Pipeline, implemented with Nextflow- 0.2.2.* env/environment.yml
Size: 1.41 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
dieterich-lab/ImmunOMICS
- 0.2.6 environment.yml
Size: 27.6 MB - Last synced: 2 months ago - Pushed: about 1 year ago
liaoherui/GDmicro
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.- 0.2.4 environment.yaml
Size: 3.57 MB - Last synced: 23 days ago - Pushed: about 2 months ago
gagneurlab/transmicron
- 0.2.5.* environment.yml
Size: 16.7 MB - Last synced: 5 days ago - Pushed: over 1 year ago
clemente-lab/mmeds-meta
A database for storing and analyzing omics data- 0.2.5 docs/environment.yml
Size: 890 MB - Last synced: about 2 months ago - Pushed: 3 months ago
samwitham/PromoterArchitecture
Arabidopsis thaliana promoter architecture analysis pipeline- 0.2.2 environment.yml
Size: 187 MB - Last synced: 7 months ago - Pushed: 9 months ago
SteMIDIfactory/P-DOR
Quick and easy outbreak reconstruction pipeline- 0.2.5 environment.yml
Size: 37.7 MB - Last synced: 3 months ago - Pushed: 8 months ago
mjaquiery/genetics-snakemake
Snakemake workflow for handling PRS scores and relatedness calculations for human genetic data from ALSPAC.- 0.2.6 workflow/envs/environment.yaml
Size: 1.44 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
paezha/PyERT-BLACK
Capstone project for course 4G06- 0.2.5 environment.yml
Size: 23.2 MB - Last synced: 11 days ago - Pushed: about 1 year ago
phbradley/tcr-gwas
Collaboration to find genetic variation associated with TCR repertoire differences- 0.2.4 environment.yml
Size: 176 MB - Last synced: 27 days ago - Pushed: over 2 years ago
duncanberger/nxf-BATQual
Bacterial genome assembly, annotation and typing pipeline.- 0.2.7 environment.yaml
Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago
magdalenarussell/mechanistic-trimming
Collaboration to identify sequence-level determinants of nucleotide trimming during V(D)J recombination- 0.2.5 environment.yml
Size: 185 MB - Last synced: 20 days ago - Pushed: 20 days ago
EpiDiverse/ewas
The EpiDiverse Epigenome-Wide Association Study Pipeline, implemented with Nextflow- 0.2.4.* env/environment.yml
Size: 20.9 MB - Last synced: 7 months ago - Pushed: about 1 year ago
IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020- 0.2.1 environment.yml
Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago
dpryan79/kiwanisbewegt
Automatic participant map generation for kiwanisbewegt- 0.2.4 environment.yaml
Size: 19.4 MB - Last synced: 9 months ago - Pushed: about 2 years ago
storm-platform/storm-gallery
A gallery of interesting codes based on Storm Platform technologies.- 0.2.5.* applications/bdc-article/compendium/environment.yml
- 0.2.5.* applications/deforestation-detection/compendium/fraction-classification/environment.yml
- 0.2.5.* applications/sits-article/compendium/environment.yml
Size: 42.7 MB - Last synced: 24 days ago - Pushed: over 1 year ago
maizeumn/grn
Maize Gene regulatory network (MaizeGRN)- 0.2.2.* environment.yml
Size: 24.1 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
joaopalmeiro/r-playground
Some experiments with R.- 0.2.3.* clifford-attractor/environment.yml
Size: 4.08 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
giorgioangel/evc
Official repository of the paper "An Offline Risk-aware Policy Selection Method for Bayesian Markov Decision Processes"- 0.2.5 environment.yml
Size: 58.6 KB - Last synced: 9 months ago - Pushed: almost 2 years ago
yangmqglobe/depipe
èȘćšćç ChIP-Seq ćææ”çš- 0.2.4.* environment.yml
Size: 16.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
nerettilab/scRNA_seq
Utilities scripts for the analysis of single cell transcriptomics- 0.2.3 environment.yml
Size: 23.4 KB - Last synced: 5 months ago - Pushed: almost 3 years ago
AbeelLab/long-read-assembly-benchmark
- 0.2.6 environment.yml
Size: 7.68 MB - Last synced: 29 days ago - Pushed: over 1 year ago
mwang87/GNPS_Volatility_Notebooks
- 0.2.1.* environment.yml
Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
jhgille2/rna_seq_pipeline_template
WIP reproducible pipeline for rna seq differential expression analysis- 0.2.7 environment.yml
Size: 77.1 KB - Last synced: about 1 year ago - Pushed: about 1 year ago
zia-foisal/reproducible_drought_index
A repository to practice reproducible research practices while studing the state of the drought around the world- 0.2.5 environment.yaml
Size: 10.7 KB - Last synced: 12 months ago - Pushed: over 1 year ago
crlero/snakemake-tutorial
- 0.2.5.* handson/workflow/environment.yaml
Size: 3.39 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
web-mev/mev-lrt
DESeq2 implementation of likelihood ratio test- 0.2.5 docker/environment.yml
Size: 12.7 KB - Last synced: 20 days ago - Pushed: 3 months ago
kelly-sovacool/advent-of-code
My solutions to the Advent of Code puzzles.- 0.2.5 environment.yml
Size: 132 KB - Last synced: 13 days ago - Pushed: over 1 year ago
Sabryr/Pmetrics_test
- 0.2.1.* environment.yml
Size: 4.04 MB - Last synced: 9 months ago - Pushed: almost 4 years ago
TeamPerie/Report_Daphne Fork of dvginneken/Reproduce_Thesis_InstitutCurie
- 0.2.7 environment.yml
Size: 32.6 MB - Last synced: 10 months ago - Pushed: 10 months ago
davidecarlson/Snakemake_diff_gene_expr
Differential Gene Expression with Snakemake- 0.2.3 environment.yml
Size: 37.1 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago
yarikoptic/example-notebooks-1 Fork of dandi/example-notebooks
- 0.2.7 000039/AllenInstitute/environment.yml
Size: 16.1 MB - Last synced: 10 months ago - Pushed: 10 months ago
kylestanley1313/ffa-p1
A repository for code related to the first iteration of functional factor analysis (FFA).- 0.2.7.* environment.yml
Size: 1.17 MB - Last synced: 28 days ago - Pushed: 6 months ago
robert-altwasser/umi-processing
- 0.2.5 env/environment.yml
Size: 340 KB - Last synced: 5 months ago - Pushed: 6 months ago
Mye-InfoBank/SIMBA
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.- 0.2.7 docker/rpy/environment.yml
Size: 981 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
nathan-adeyemi/Inpatient-Bed-Allocation-Optimization
- 0.2.7.* environment.yaml
Size: 8.22 MB - Last synced: 4 months ago - Pushed: 4 months ago
Kenneth-Mitchell/HMC-Thesis
- 0.2.7 environment.yml
Size: 8.85 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
quevedor2/mini_projects
Repository for mini projects that don't warrant a repo of their own- 0.2.4 PDAC_AhR/envs/environment.yaml
Size: 657 KB - Last synced: 11 days ago - Pushed: 12 days ago
mitjanikolaus/childes-grammaticality
- 0.2.7 environments/environment.yml
Size: 4.75 MB - Last synced: 22 days ago - Pushed: 22 days ago
WenfeiY/P.patens_geno_design
Python and R script for Physcomitrium patens genome design- 0.2.7 environment.yml
Size: 865 KB - Last synced: about 2 months ago - Pushed: about 2 months ago
is-the-biologist/QC_long_reads
- 0.2.7 workflow/envs/environment.yml
Size: 157 MB - Last synced: 18 days ago - Pushed: 18 days ago
Jianhua-Wang/easyfinemap
user-friendly pipeline for GWAS fine-mapping- 0.2.7 environment.yml
Size: 50.6 MB - Last synced: 27 days ago - Pushed: 28 days ago
alipirani88/snpkit
Modular workflow for Microbial Variant Calling and SNP diagnostics.- 0.2.5 envs/environment.yml
Size: 61.8 MB - Last synced: 8 days ago - Pushed: 8 days ago
a-hr/pol2speed_pipeline
- 0.2.7 environment.yaml
Size: 15.9 MB - Last synced: about 13 hours ago - Pushed: about 14 hours ago
SteinPanyu/IndependentReproducibility
- 0.2.7 environment.yaml
Size: 20.2 MB - Last synced: 7 days ago - Pushed: 7 days ago
dandi/example-notebooks
- 0.2.7 000039/AllenInstitute/environment.yml
Size: 57.5 MB - Last synced: 1 day ago - Pushed: 1 day ago