Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: r-isoband

isoband: An R package to generate contour lines and polygons.
7 versions
Latest release: over 1 year ago
3 dependent packages

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/r-isoband

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/r-lib%2Fisoband

Dependent Repos 47

brucemoran/tumour_only
Tumour-only DNA sequencing analysis
  • 0.2.4 environment.yaml

Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

btmartin721/ClineHelpR
Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
  • 0.2.5 environment.yml

Size: 93.4 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

villegar/DoGE
Differential Gene Expression Analysis Pipeline
  • 0.2.0.* environment.yml

Size: 16 MB - Last synced: 10 months ago - Pushed: almost 3 years ago

lfnothias/qiime2
  • 0.2.3.* environment.yml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

krinsman/dissertation
Source code and Jupyter notebooks related to PhD dissertation.
  • 0.2.4 environment.yml

Last synced: over 1 year ago

vaqm2/custom_gwas
Python Code using CyVCF2 to run custom GWAS models on imputed VCF files
  • 0.2.5.* environment.yml

Size: 958 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

moj-analytical-services/DefCalc
The deflator calculator.
  • 0.2.1 environment.yml

Size: 4.83 MB - Last synced: 10 months ago - Pushed: 10 months ago

evoosa/16S_bacteria_detector
Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms
  • 0.2.1 src/environment.yml

Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

kutaslab/fitgrid
Multichannel event-related time-series regression modeling for EEG, MEG, and sensor array data
  • 0.2.4 binder/environment.yml

Size: 124 MB - Last synced: 26 days ago - Pushed: over 1 year ago

web-mev/mev-normalize
  • 0.2.3 docker/environment.yml

Size: 16.6 KB - Last synced: 20 days ago - Pushed: 3 months ago

liaoherui/StrainScan
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
  • 0.2.5 environment.yaml

Size: 56.7 MB - Last synced: 7 days ago - Pushed: about 1 month ago

nlm-irp-jianglab/Evolink
:palm_tree: A Phylogenetic Approach for Rapid Identification of Genotype-Phenotype Associations in Large-scale Microbial Multi-species Data
  • 0.2.5 environment.yml

Size: 251 MB - Last synced: 9 months ago - Pushed: 9 months ago

GWeindel/lecture_R
A really short introduction (4 hours lecture) for psychology doctoral students at Aix Marseille University.
  • 0.2.4 environment.yml

Size: 4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

happykhan/journal
Citation lists
  • 0.2.5 environment.yml

Size: 28 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

quadram-institute-bioscience/dadaist2
Dadaist2 🟹 Highway to R
  • 0.2.4 lab/class/environment.yml

Size: 39.4 MB - Last synced: 3 months ago - Pushed: 3 months ago

jamesfitton/cxr
Intertidal water occurrence generator from Sentinel 2 satellite data and Google Earth Engine
  • 0.2.5 environment.yml

Size: 1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

yangmqglobe/dapipe
è‡Ș抹挖的 ATAC-Seq ćˆ†æžæ”çš‹
  • 0.2.4.* environment.yml

Size: 193 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

bokulich-lab/advanced-comp-bio-tutorial
Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022
  • 0.2.5 environment.yml

Size: 77.9 MB - Last synced: 12 months ago - Pushed: 12 months ago

Bernt/MITOS
MITOS
  • 0.2.5.* environment.yaml

Last synced: 15 days ago

SERVIR/mekong-swat-django
  • 0.2.5 environment.yml

Size: 1.58 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

sadamov/phenology_curve_fitting
Fitting of phenological season description curves to historical pollen measurements.
  • 0.2.5 environment.yml

Size: 53.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

omicsclass/biodocker
docker images for bioinformatics
  • 0.2.1.* ampliseq-q2/environment.yml

Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago

russHyde/mast-shiny
Notes / code from working through "Mastering Shiny". Written while running a R4DS bookclub
  • 0.2.3.* conda/environment.yml

Size: 154 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

greenelab/2022-cf-sputum
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways
  • 0.2.4 environment.yml

Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago

krinsman/droplets
  • 0.2.4 environment.yml

Last synced: over 1 year ago

wrightdw/COG-UK-ME
COG-UK Mutation Explorer
  • 0.2.4 environment.yml

Size: 105 MB - Last synced: 3 months ago - Pushed: 3 months ago

kevinpryan/caf-subtype-analysis
  • 0.2.5 environment.yml

Size: 56.9 MB - Last synced: 8 months ago - Pushed: 8 months ago

mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow
  • 0.2.5 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

gonzalosm98/scRNA-SeqAnalysis
  • 0.2.5 environment.yml

Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

NatPombubpa/Qiime2_2022.8_binder
Qiime2_2022.8_binder test
  • 0.2.5.* environment.yml

Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago

cjc77/Fogg-Lab-RNA-Seq-analysis
Preliminary analysis and informatics for TCGA gynecological cancer data
  • 0.2.3.* environment.yml

Size: 61.3 MB - Last synced: 4 months ago - Pushed: over 1 year ago

EpiDiverse/dmr
The EpiDiverse Differentially Methylated Regions Pipeline, implemented with Nextflow
  • 0.2.2.* env/environment.yml

Size: 1.41 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

dieterich-lab/ImmunOMICS
  • 0.2.6 environment.yml

Size: 27.6 MB - Last synced: 2 months ago - Pushed: about 1 year ago

liaoherui/GDmicro
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.
  • 0.2.4 environment.yaml

Size: 3.57 MB - Last synced: 23 days ago - Pushed: about 2 months ago

gagneurlab/transmicron
  • 0.2.5.* environment.yml

Size: 16.7 MB - Last synced: 5 days ago - Pushed: over 1 year ago

clemente-lab/mmeds-meta
A database for storing and analyzing omics data
  • 0.2.5 docs/environment.yml

Size: 890 MB - Last synced: about 2 months ago - Pushed: 3 months ago

samwitham/PromoterArchitecture
Arabidopsis thaliana promoter architecture analysis pipeline
  • 0.2.2 environment.yml

Size: 187 MB - Last synced: 7 months ago - Pushed: 9 months ago

SteMIDIfactory/P-DOR
Quick and easy outbreak reconstruction pipeline
  • 0.2.5 environment.yml

Size: 37.7 MB - Last synced: 3 months ago - Pushed: 8 months ago

mjaquiery/genetics-snakemake
Snakemake workflow for handling PRS scores and relatedness calculations for human genetic data from ALSPAC.
  • 0.2.6 workflow/envs/environment.yaml

Size: 1.44 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

paezha/PyERT-BLACK
Capstone project for course 4G06
  • 0.2.5 environment.yml

Size: 23.2 MB - Last synced: 11 days ago - Pushed: about 1 year ago

phbradley/tcr-gwas
Collaboration to find genetic variation associated with TCR repertoire differences
  • 0.2.4 environment.yml

Size: 176 MB - Last synced: 27 days ago - Pushed: over 2 years ago

duncanberger/nxf-BATQual
Bacterial genome assembly, annotation and typing pipeline.
  • 0.2.7 environment.yaml

Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago

magdalenarussell/mechanistic-trimming
Collaboration to identify sequence-level determinants of nucleotide trimming during V(D)J recombination
  • 0.2.5 environment.yml

Size: 185 MB - Last synced: 20 days ago - Pushed: 20 days ago

EpiDiverse/ewas
The EpiDiverse Epigenome-Wide Association Study Pipeline, implemented with Nextflow
  • 0.2.4.* env/environment.yml

Size: 20.9 MB - Last synced: 7 months ago - Pushed: about 1 year ago

IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020
  • 0.2.1 environment.yml

Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago

dpryan79/kiwanisbewegt
Automatic participant map generation for kiwanisbewegt
  • 0.2.4 environment.yaml

Size: 19.4 MB - Last synced: 9 months ago - Pushed: about 2 years ago

storm-platform/storm-gallery
A gallery of interesting codes based on Storm Platform technologies.
  • 0.2.5.* applications/bdc-article/compendium/environment.yml
  • 0.2.5.* applications/deforestation-detection/compendium/fraction-classification/environment.yml
  • 0.2.5.* applications/sits-article/compendium/environment.yml

Size: 42.7 MB - Last synced: 24 days ago - Pushed: over 1 year ago

maizeumn/grn
Maize Gene regulatory network (MaizeGRN)
  • 0.2.2.* environment.yml

Size: 24.1 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

joaopalmeiro/r-playground
Some experiments with R.
  • 0.2.3.* clifford-attractor/environment.yml

Size: 4.08 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

giorgioangel/evc
Official repository of the paper "An Offline Risk-aware Policy Selection Method for Bayesian Markov Decision Processes"
  • 0.2.5 environment.yml

Size: 58.6 KB - Last synced: 9 months ago - Pushed: almost 2 years ago

yangmqglobe/depipe
è‡Ș抹挖的 ChIP-Seq ćˆ†æžæ”çš‹
  • 0.2.4.* environment.yml

Size: 16.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

nerettilab/scRNA_seq
Utilities scripts for the analysis of single cell transcriptomics
  • 0.2.3 environment.yml

Size: 23.4 KB - Last synced: 5 months ago - Pushed: almost 3 years ago

AbeelLab/long-read-assembly-benchmark
  • 0.2.6 environment.yml

Size: 7.68 MB - Last synced: 29 days ago - Pushed: over 1 year ago

mwang87/GNPS_Volatility_Notebooks
  • 0.2.1.* environment.yml

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

jhgille2/rna_seq_pipeline_template
WIP reproducible pipeline for rna seq differential expression analysis
  • 0.2.7 environment.yml

Size: 77.1 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

zia-foisal/reproducible_drought_index
A repository to practice reproducible research practices while studing the state of the drought around the world
  • 0.2.5 environment.yaml

Size: 10.7 KB - Last synced: 12 months ago - Pushed: over 1 year ago

crlero/snakemake-tutorial
  • 0.2.5.* handson/workflow/environment.yaml

Size: 3.39 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

web-mev/mev-lrt
DESeq2 implementation of likelihood ratio test
  • 0.2.5 docker/environment.yml

Size: 12.7 KB - Last synced: 20 days ago - Pushed: 3 months ago

kelly-sovacool/advent-of-code
My solutions to the Advent of Code puzzles.
  • 0.2.5 environment.yml

Size: 132 KB - Last synced: 13 days ago - Pushed: over 1 year ago

Sabryr/Pmetrics_test
  • 0.2.1.* environment.yml

Size: 4.04 MB - Last synced: 9 months ago - Pushed: almost 4 years ago

TeamPerie/Report_Daphne Fork of dvginneken/Reproduce_Thesis_InstitutCurie
  • 0.2.7 environment.yml

Size: 32.6 MB - Last synced: 10 months ago - Pushed: 10 months ago

davidecarlson/Snakemake_diff_gene_expr
Differential Gene Expression with Snakemake
  • 0.2.3 environment.yml

Size: 37.1 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

yarikoptic/example-notebooks-1 Fork of dandi/example-notebooks
  • 0.2.7 000039/AllenInstitute/environment.yml

Size: 16.1 MB - Last synced: 10 months ago - Pushed: 10 months ago

kylestanley1313/ffa-p1
A repository for code related to the first iteration of functional factor analysis (FFA).
  • 0.2.7.* environment.yml

Size: 1.17 MB - Last synced: 28 days ago - Pushed: 6 months ago

robert-altwasser/umi-processing
  • 0.2.5 env/environment.yml

Size: 340 KB - Last synced: 5 months ago - Pushed: 6 months ago

Mye-InfoBank/SIMBA
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.
  • 0.2.7 docker/rpy/environment.yml

Size: 981 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

nathan-adeyemi/Inpatient-Bed-Allocation-Optimization
  • 0.2.7.* environment.yaml

Size: 8.22 MB - Last synced: 4 months ago - Pushed: 4 months ago

Kenneth-Mitchell/HMC-Thesis
  • 0.2.7 environment.yml

Size: 8.85 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

quevedor2/mini_projects
Repository for mini projects that don't warrant a repo of their own
  • 0.2.4 PDAC_AhR/envs/environment.yaml

Size: 657 KB - Last synced: 11 days ago - Pushed: 12 days ago

mitjanikolaus/childes-grammaticality
  • 0.2.7 environments/environment.yml

Size: 4.75 MB - Last synced: 22 days ago - Pushed: 22 days ago

WenfeiY/P.patens_geno_design
Python and R script for Physcomitrium patens genome design
  • 0.2.7 environment.yml

Size: 865 KB - Last synced: about 2 months ago - Pushed: about 2 months ago

is-the-biologist/QC_long_reads
  • 0.2.7 workflow/envs/environment.yml

Size: 157 MB - Last synced: 18 days ago - Pushed: 18 days ago

Jianhua-Wang/easyfinemap
user-friendly pipeline for GWAS fine-mapping
  • 0.2.7 environment.yml

Size: 50.6 MB - Last synced: 27 days ago - Pushed: 28 days ago

alipirani88/snpkit
Modular workflow for Microbial Variant Calling and SNP diagnostics.
  • 0.2.5 envs/environment.yml

Size: 61.8 MB - Last synced: 8 days ago - Pushed: 8 days ago

a-hr/pol2speed_pipeline
  • 0.2.7 environment.yaml

Size: 15.9 MB - Last synced: about 13 hours ago - Pushed: about 14 hours ago

SteinPanyu/IndependentReproducibility
  • 0.2.7 environment.yaml

Size: 20.2 MB - Last synced: 7 days ago - Pushed: 7 days ago

dandi/example-notebooks
  • 0.2.7 000039/AllenInstitute/environment.yml

Size: 57.5 MB - Last synced: 1 day ago - Pushed: 1 day ago