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GitHub / is-the-biologist / QC_long_reads

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/is-the-biologist%2FQC_long_reads

Stars: 0
Forks: 0
Open Issues: 0

License: None
Language: Python
Repo Size: 157 MB
Dependencies: 328

Created: 2 months ago
Updated: 28 days ago
Last pushed: 28 days ago
Last synced: 28 days ago

Files

Readme

Dependencies

workflow/envs/environment.yml conda

_libgcc_mutex 0.1
_openmp_mutex 4.5
_r-mutex 1.0.1
aiohttp 3.9.3
aiosignal 1.3.1
amply 0.1.6
appdirs 1.4.4
argparse-dataclass 2.0.0
attmap 0.13.2
attrs 23.2.0
binutils_impl_linux-64 2.40
bioconductor-biobase 2.62.0
bioconductor-biocgenerics 0.48.1
bioconductor-biocparallel 1.36.0
bioconductor-limma 3.58.1
bioconductor-variancepartition 1.32.2
boto 2.49.0
boto3 1.34.66
botocore 1.34.66
brotli-python 1.1.0
bwidget 1.9.14
bz2file 0.98
bzip2 1.0.8
c-ares 1.27.0
ca-certificates 2024.2.2
cachetools 5.3.3
cairo 1.18.0
certifi 2024.2.2
cffi 1.16.0
charset-normalizer 3.3.2
coin-or-cbc 2.10.10
coin-or-cgl 0.60.7
coin-or-clp 1.17.8
coin-or-osi 0.108.8
coin-or-utils 2.11.9
coincbc 2.10.10
colorama 0.4.6
conda-inject 1.3.1
configargparse 1.7
connection_pool 0.0.3
cryptography 42.0.5
curl 8.6.0
datrie 0.8.2
docutils 0.20.1
dpath 2.1.6
eido 0.2.2
exceptiongroup 1.2.0
expat 2.6.2
font-ttf-dejavu-sans-mono 2.37
font-ttf-inconsolata 3.000
font-ttf-source-code-pro 2.038
font-ttf-ubuntu 0.83
fontconfig 2.14.2
fonts-conda-ecosystem 1
fonts-conda-forge 1
freetype 2.12.1
fribidi 1.0.10
frozenlist 1.4.1
gcc_impl_linux-64 13.2.0
gettext 0.21.1
gfortran_impl_linux-64 13.2.0
gitdb 4.0.11
gitpython 3.1.42
google-api-core 2.17.1
google-auth 2.28.2
google-cloud-core 2.4.1
google-cloud-storage 2.16.0
google-crc32c 1.1.2
google-resumable-media 2.7.0
googleapis-common-protos 1.63.0
graphite2 1.3.13
grpcio 1.62.1
gxx_impl_linux-64 13.2.0
harfbuzz 8.3.0
htslib 1.19.1
humanfriendly 10.0
icu 73.2
idna 3.6
immutables 0.20
importlib_resources 6.3.2
iniconfig 2.0.0
jinja2 3.1.3
jmespath 1.0.1
joblib 1.3.2
jsonschema 4.21.1
jsonschema-specifications 2023.12.1
jupyter_core 5.7.2
kernel-headers_linux-64 2.6.32
keyutils 1.6.1
krb5 1.21.2
ld_impl_linux-64 2.40
lerc 4.0.0
libabseil 20240116.1
libblas 3.9.0
libcblas 3.9.0
libcrc32c 1.1.2
libcurl 8.6.0
libdeflate 1.18
libedit 3.1.20191231
libev 4.33
libexpat 2.6.2
libffi 3.4.2
libgcc-devel_linux-64 13.2.0
libgcc-ng 13.2.0
libgfortran-ng 13.2.0
libgfortran5 13.2.0
libglib 2.78.1
libgomp 13.2.0
libgrpc 1.62.1
libiconv 1.17
libjpeg-turbo 2.1.5.1
liblapack 3.9.0
liblapacke 3.9.0
libnghttp2 1.58.0
libnsl 2.0.1
libopenblas 0.3.26
libpng 1.6.43
libprotobuf 4.25.3
libre2-11 2023.09.01
libsanitizer 13.2.0
libsqlite 3.45.2
libssh2 1.11.0
libstdcxx-devel_linux-64 13.2.0
libstdcxx-ng 13.2.0
libtiff 4.6.0
libuuid 2.38.1
libwebp-base 1.3.2
libxcb 1.15
libxcrypt 4.4.36
libxml2 2.12.6
libzlib 1.2.13
logmuse 0.2.6
make 4.3
markdown-it-py 3.0.0
markupsafe 2.1.5
mdurl 0.1.2
multidict 6.0.5
nbformat 5.10.3
ncurses 6.4.20240210
nlopt 2.7.1
numpy 1.26.4
openssl 3.2.1
packaging 24.0
pandas 2.2.1
pango 1.50.14
pcre2 10.40
peppy 0.40.1
pip 24.0
pixman 0.43.2
pkgutil-resolve-name 1.3.10
plac 1.4.3
platformdirs 4.2.0
pluggy 1.4.0
protobuf 4.25.3
psutil 5.9.8
pthread-stubs 0.4
pulp 2.8.0
pyasn1 0.5.1
pyasn1-modules 0.3.0
pycparser 2.21
pygments 2.17.2
pyopenssl 24.0.0
pyparsing 3.1.2
pysocks 1.7.1
pytest 8.1.1
python 3.12.2
python-dateutil 2.9.0
python-fastjsonschema 2.19.1
python-tzdata 2024.1
python_abi 3.12
pytz 2024.1
pyu2f 0.1.5
pyyaml 6.0.1
r 4.3
r-aod 1.3.3
r-backports 1.4.1
r-base 4.3.1
r-bh 1.84.0_0
r-bitops 1.0_7
r-boot 1.3_30
r-broom 1.0.5
r-catools 1.18.2
r-class 7.3_22
r-cli 3.6.2
r-cluster 2.1.6
r-codetools 0.2_20
r-colorspace 2.1_0
r-corpcor 1.6.10
r-cpp11 0.4.7
r-crayon 1.5.2
r-dplyr 1.1.4
r-ellipsis 0.3.2
r-envstats 2.8.1
r-evaluate 0.23
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r-fansi 1.0.6
r-farver 2.1.1
r-foreign 0.8_86
r-formatr 1.14
r-futile.logger 1.4.3
r-futile.options 1.0.1
r-gbrd 0.4_11
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r-gtable 0.3.4
r-gtools 3.9.5
r-highr 0.10
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r-iterators 1.0.14
r-kernsmooth 2.23_22
r-knitr 1.45
r-labeling 0.4.3
r-lambda.r 1.2.4
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r-lifecycle 1.0.4
r-lme4 1.1_35.2
r-lmertest 3.1_3
r-magrittr 2.0.3
r-mass 7.3_60
r-matrix 1.6_5
r-matrixstats 1.2.0
r-mgcv 1.9_1
r-minqa 1.2.6
r-munsell 0.5.0
r-mvtnorm 1.2_4
r-nlme 3.1_164
r-nloptr 2.0.3
r-nnet 7.3_19
r-nortest 1.0_4
r-numderiv 2016.8_1.1
r-pbkrtest 0.5.2
r-pillar 1.9.0
r-pkgconfig 2.0.3
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r-purrr 1.0.2
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r-rbibutils 2.2.16
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r-rcpp 1.0.12
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r-rcppeigen 0.3.4.0.0
r-rdpack 2.6
r-recommended 4.3
r-remacor 0.0.18
r-reshape2 1.4.4
r-rhpcblasctl 0.23_42
r-rlang 1.1.3
r-rpart 4.1.23
r-scales 1.3.0
r-snow 0.4_4
r-spatial 7.3_17
r-statmod 1.5.0
r-stringi 1.8.3
r-stringr 1.5.1
r-survival 3.5_8
r-tibble 3.2.1
r-tidyr 1.3.1
r-tidyselect 1.2.0
r-utf8 1.2.4
r-vctrs 0.6.5
r-viridislite 0.4.2
r-withr 3.0.0
r-xfun 0.43
r-xml2 1.3.6
r-yaml 2.3.8
re2 2023.09.01
readline 8.2
referencing 0.34.0
requests 2.31.0
reretry 0.11.8
rich 13.7.1
rpds-py 0.18.0
rsa 4.9
s3transfer 0.10.1
samtools 1.19.2
scikit-learn 1.4.1.post1
scipy 1.12.0
sed 4.8
setuptools 69.2.0
six 1.16.0
slack-sdk 3.27.1
slack_sdk 3.27.1
smart_open 3.0.0
smmap 5.0.0
snakemake 8.9.0
snakemake-interface-common 1.17.1
snakemake-interface-executor-plugins 9.0.0
snakemake-interface-report-plugins 1.0.0
snakemake-interface-storage-plugins 3.1.1
snakemake-minimal 8.9.0
stopit 1.1.2
sysroot_linux-64 2.12
tabulate 0.9.0
threadpoolctl 3.4.0
throttler 1.2.2
tk 8.6.13
tktable 2.10
tomli 2.0.1
toposort 1.10
traitlets 5.14.2
typing_extensions 4.10.0
tzdata 2024a
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urllib3 2.2.1
veracitools 0.1.3
wheel 0.42.0
wrapt 1.16.0
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xorg-libice 1.1.1
xorg-libsm 1.2.4
xorg-libx11 1.8.7
xorg-libxau 1.0.11
xorg-libxdmcp 1.1.3
xorg-libxext 1.3.4
xorg-libxrender 0.9.11
xorg-libxt 1.3.0
xorg-renderproto 0.11.1
xorg-xextproto 7.3.0
xorg-xproto 7.0.31
xz 5.2.6
yaml 0.2.5
yarl 1.9.4
yte 1.5.4
zipp 3.17.0
zlib 1.2.13
zstd 1.5.5