Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: coincbc

Cbc (Coin-or branch and cut) is an open-source mixed integer linear programming solver written in C++. It can be used as a callable library or using a stand-alone executable. It can be called through AIMMS (through the AIMMSlinks project), AMPL (natively), CMPL, GAMS (through the GAMSlinks project), JuMP, Mathematica, MiniZinc, MPL (through the CoinMP project), PuLP, Python (e.g., cbcpy), and OpenSolver for Excel, among others.
2 versions
Latest release: 10 months ago

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/coincbc

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/coin-or%2FCbc

Dependent Repos 45

ZhenyanLuo/FindPlantNLRs
  • 2.10.5 environment.yml

Size: 361 KB - Last synced: 4 months ago - Pushed: 4 months ago

kristen-schneider/genotype-encoding
  • 2.10.5 environment.yml

Size: 16.5 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

Greening-Seattle/Shared
Shared work and datasets
  • 2.10.5.* environment.yml

Size: 57.5 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

iuni-cadre/WoS-disambiguation
Project to compare and develop disambiguation solutions for Web fo Science and beyond
  • 2.10.5 environment.yml

Size: 2.74 MB - Last synced: 29 days ago - Pushed: about 3 years ago

OSU-BMBL/PGRP-Grape-Grafting
Adapting Perennial Crops for Climate Change: Graft Transmissible Effects of Rootstocks on Grapevine Shoots
  • 2.10.5 environment.yml

Size: 2.22 MB - Last synced: 9 days ago - Pushed: about 3 years ago

nygctech/hudson
Pyseq 4i spatial pipeline
  • 2.10.8 environment.yaml

Size: 235 MB - Last synced: 15 days ago - Pushed: 15 days ago

mbardwell/masters-simapprox
  • pypsa/environment.yaml

Size: 133 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

EthanHolleman/GLOE-reps
Attempting to answer the question, how similar are biological replicates in GLOE-seq publication.
  • 2.10.5 environment.yml

Size: 3.71 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

manutamminen/epicpcr_6
  • 2.10.5 env/environment.yml

Size: 8.84 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

yangmqglobe/dapipe
自动化的 ATAC-Seq 分析流程
  • 2.10.5.* environment.yml

Size: 193 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

TTTPOB/fastq-downloader
download fastq from gsm or srx accession, rename, combine, in one click
  • 2.10.5 environment.yaml

Size: 93.8 KB - Last synced: 26 days ago - Pushed: almost 2 years ago

Dylkln/LAGOON
  • 2.10.5 environment.yml

Size: 181 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

kaistcbfg/scAVENGERS
  • 2.10.7 envs/environment.yml

Size: 67.5 MB - Last synced: 5 months ago - Pushed: 10 months ago

TemoaProject/temoacloud
Django framework for model.temoacloud.com
  • environment.yml

Size: 24.8 MB - Last synced: 4 months ago - Pushed: over 2 years ago

aaronatp/scRNA_cell_cluster_gene_expression_analysis
Tools for analyzing scRNA-seq counts data generated from Seurat
  • 2.10.5 environment.yml

Size: 4.31 MB - Last synced: 8 months ago - Pushed: over 1 year ago

greenelab/2022-cf-sputum
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways
  • 2.10.3 environment.yml

Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago

benafischer94/osmnx Fork of gboeing/osmnx
OSMnx: Python for street networks. Retrieve, model, analyze, and visualize street networks and other spatial data from OpenStreetMap.
  • 2.10.8 environments/docker/environment.yml

Size: 6 MB - Last synced: 29 days ago - Pushed: over 1 year ago

mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow
  • 2.10.8 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

gonzalosm98/scRNA-SeqAnalysis
  • 2.10.5 environment.yml

Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

Pinjontall94/abed
  • 2.10.5 environment.yaml

Last synced: over 1 year ago

jbloomlab/SARSr-CoV_homolog_survey
Survey of ACE2 binding specificities among SARS-related CoV homologs
  • 2.10.5 environment.yml

Size: 139 MB - Last synced: 10 months ago - Pushed: about 1 year ago

babelomics/impuSARS
Software tool for the imputation of whole-genome SARS-CoV-2 sequences.
  • 2.10.5.* conda/environment.yml

Size: 85.2 MB - Last synced: 9 months ago - Pushed: over 1 year ago

eudesbarbosa/snappy-pipeline Fork of bihealth/snappy-pipeline
SNAPPY Nucleic Acid Processing in Python
  • snappy_wrappers/wrappers/gatk_hc/environment.yaml
  • snappy_wrappers/wrappers/gatk_hc_par/environment.yaml
  • snappy_wrappers/wrappers/gatk_ug/environment.yaml
  • snappy_wrappers/wrappers/gatk_ug_par/environment.yaml

Size: 2.16 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

kathjordan/oeo Fork of TemoaProject/oeo
Open Energy Outlook for the United States
  • environment.yml

Size: 481 MB - Last synced: 9 months ago - Pushed: 9 months ago

dieterich-lab/ImmunOMICS
  • 2.10.8 environment.yml

Size: 27.6 MB - Last synced: 2 months ago - Pushed: about 1 year ago

fieldima/adequacy_of_PCMs Fork of phylo-lab-usc/fiels_workbench
This repository contains all the scripts for analyzing the adequacy of the most commonly used phylogenetic comparative models for gene expression datasets.
  • 2.10.8 Normalization_Reanalysis/environment.yml

Size: 350 MB - Last synced: 11 months ago - Pushed: over 1 year ago

jbloomlab/barcoded_flu_pdmH1N1
Barcoded pdmH1N1 virus hashing experiment
  • 2.10.5 environment.yml

Size: 642 MB - Last synced: 4 months ago - Pushed: 10 months ago

gagneurlab/transmicron
  • 2.10.5.* environment.yml

Size: 16.7 MB - Last synced: 6 days ago - Pushed: over 1 year ago

davidmurray/osmnx Fork of gboeing/osmnx
OSMnx: Python for street networks. Retrieve, model, analyze, and visualize street networks and other spatial data from OpenStreetMap.
  • 2.10.8 environments/docker/environment.yml
  • 2.10.8 environments/linux/environment.yml

Size: 6.12 MB - Last synced: 22 days ago - Pushed: over 1 year ago

nickodell/osmnx Fork of gboeing/osmnx
OSMnx: Python for street networks. Retrieve, model, analyze, and visualize street networks and other spatial data from OpenStreetMap.
  • 2.10.8 environments/docker/environment.yml
  • 2.10.8 environments/linux/environment.yml

Size: 6.09 MB - Last synced: 10 months ago - Pushed: 10 months ago

mjaquiery/genetics-snakemake
Snakemake workflow for handling PRS scores and relatedness calculations for human genetic data from ALSPAC.
  • 2.10.8 workflow/envs/environment.yaml

Size: 1.44 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

mestill7/RepCounter
RepCounter provides a lightweight, modular program for estimating the relative abundance of repeat families and classes in a next-generation sequencing project.
  • 2.10.8 environment.yaml

Size: 15.1 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

mestill7/HiC-fast
HiC processing pipeline for fast alignment
  • 2.10.5 environment.yaml

Size: 32.2 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago

mestill7/HIV_Chimfinder
  • 2.10.5 environment.yaml

Size: 76.2 KB - Last synced: about 2 months ago - Pushed: over 3 years ago

mestill7/Snake-RNA
Pipeline for summarizing expression data for batches of public RNA-seq datasets
  • 2.10.5 environment.yaml

Size: 128 KB - Last synced: about 2 months ago - Pushed: over 3 years ago

manutamminen/epicpcr_7
  • 2.10.5 env/environment.yml

Size: 2.98 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

EthanHolleman/298lab10
201B Lab
  • 2.10.5 environment.yml

Size: 4.88 KB - Last synced: about 1 year ago - Pushed: about 3 years ago

EthanHolleman/GLOE-loops
Exploration of human GLOE-seq data and looking for possible connections to Rloop formation
  • 2.10.5 environment.yml

Size: 2.9 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

phylo-lab-usc/fiels_workbench
  • 2.10.5 Mammal_organs/gene_family_phylogenies/environment.yml

Size: 312 MB - Last synced: 11 months ago - Pushed: almost 2 years ago

James-S-Santangelo/glue_dnaSeqQC
  • 2.10.5 environment.yaml

Size: 9.51 MB - Last synced: 9 months ago - Pushed: about 1 year ago

clameron/MESM
  • environment.yml

Size: 33.7 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

yangmqglobe/depipe
自动化的 ChIP-Seq 分析流程
  • 2.10.5.* environment.yml

Size: 16.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

Ameame1/Computing-Modeling-Based-on-Slime-Mould
  • 2.10.8 osmnx-main/environments/docker/environment.yml
  • 2.10.8 osmnx-main/environments/linux/environment.yml

Size: 96.1 MB - Last synced: 12 months ago - Pushed: 12 months ago

2021-Energy-Climate-Hackathon/group7_euro-calliope-uk_irl_simplified-final
  • environment.yaml

Size: 720 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

2021-Energy-Climate-Hackathon/group7_euro-calliope-uk_irl_original-from-bryn
  • environment.yaml

Size: 1.42 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago

keng404/nextflow_test
cwl-wrapped nextflow pipeline for ICA (Illumina Connected Analytics)
  • 2.9.9.* environment.yml
  • 2.9.9.* hlatyping/environment.yml

Size: 13.1 MB - Last synced: 8 months ago - Pushed: 8 months ago

MasterOnDust/Master_thesis_UiO_workflow
Snakemake workflow for processing FLEXPART and FLEXDUST model output and doing analysis related to my thesis
  • 2.10.5.* environment.yml

Size: 24.1 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

crlero/snakemake-tutorial
  • 2.10.5.* handson/workflow/environment.yaml

Size: 3.39 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

stephenshank/argos-galaxy
  • 2.10.10 environment.yml

Size: 21.5 KB - Last synced: about 1 month ago - Pushed: 8 months ago

GenomicsNX/DeepVelo Fork of bowang-lab/DeepVelo
  • 2.10.5 data/data_preprocessing/hindbrain_dev/environment.yaml

Size: 42.1 MB - Last synced: about 1 month ago - Pushed: almost 2 years ago

davidecarlson/Snakemake_diff_gene_expr
Differential Gene Expression with Snakemake
  • 2.10.5 environment.yml

Size: 37.1 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

phofl/osmnx Fork of gboeing/osmnx
Python for street networks. Download, model, analyze, and visualize street networks and other geospatial features from OpenStreetMap.
  • 2.10.10 environments/docker/environment.yml
  • 2.10.10 environments/linux/environment.yml

Size: 6.41 MB - Last synced: 10 months ago - Pushed: 10 months ago

lqsae/hlatyping Fork of nf-core/hlatyping
Precision HLA typing from next-generation sequencing data
  • 2.9.9.* environment.yml

Size: 38.9 MB - Last synced: 29 days ago - Pushed: almost 3 years ago

TimFuermann/PyPSA Fork of PyPSA/PyPSA
PyPSA: Python for Power System Analysis
  • binder/environment.yml

Size: 10.4 MB - Last synced: 9 months ago - Pushed: over 1 year ago

jeevannavar/epicpcr_6 Fork of manutamminen/epicpcr_6
  • 2.10.5 env/environment.yml

Size: 8.84 MB - Last synced: 8 months ago - Pushed: over 2 years ago

haoran1012/osmnx Fork of gboeing/osmnx
OSMnx: Python for street networks. Retrieve, model, analyze, and visualize street networks and other spatial data from OpenStreetMap.
  • 2.10.8 environments/docker/environment.yml
  • 2.10.8 environments/linux/environment.yml

Size: 6.1 MB - Last synced: 29 days ago - Pushed: about 1 year ago

nreinicke/osmnx Fork of gboeing/osmnx
OSMnx: Python for street networks. Retrieve, model, analyze, and visualize street networks and other spatial data from OpenStreetMap.
  • 2.10.5 environments/docker/environment.yml
  • 2.10.5 environments/linux/environment.yml

Size: 5.95 MB - Last synced: 29 days ago - Pushed: about 2 years ago

openCEMorg/openCEM
Capacity Expansion Model and Optimiser for the Australian National Energy Market
  • environment.yml

Size: 17.5 MB - Last synced: about 1 month ago - Pushed: 10 months ago

rl-institut/digipipe
Data and ES pipeline for Digiplan
  • environment.yml

Size: 2.61 MB - Last synced: 28 days ago - Pushed: 28 days ago

rl-institut/digiplan
StEmp ABW 2.0 - new version of StEmp ABW tool
  • environment.yml

Size: 65.5 MB - Last synced: about 8 hours ago - Pushed: about 13 hours ago

bihealth/snappy-pipeline
SNAPPY Nucleic Acid Processing in Python
  • snappy_wrappers/wrappers/gatk_hc/environment.yaml
  • snappy_wrappers/wrappers/gatk_hc_par/environment.yaml
  • snappy_wrappers/wrappers/gatk_ug/environment.yaml
  • snappy_wrappers/wrappers/gatk_ug_par/environment.yaml

Size: 7.57 MB - Last synced: 29 days ago - Pushed: 30 days ago

raphael-group/CalicoST
Inferring allele-specific copy number aberrations and tumor phylogeography from spatially resolved transcriptomics
  • 2.10.10 environment.yml

Size: 212 MB - Last synced: 29 days ago - Pushed: 30 days ago

robert-altwasser/umi-processing
  • 2.10.8 env/environment.yml

Size: 340 KB - Last synced: 5 months ago - Pushed: 6 months ago

barz-christian/blog
  • 2.10.10 environment.yml

Size: 1.34 MB - Last synced: 5 months ago - Pushed: 5 months ago

deepomicslab/Ambigram
Detecting complex breakage-fusion-bridge genome rearrangement with Ambigram
  • 2.10.8 environment.yml

Size: 9.68 MB - Last synced: 21 days ago - Pushed: 4 months ago

acpuchades/hub-roche
  • 2.10.10 environment.yml

Size: 19.5 KB - Last synced: about 2 months ago - Pushed: about 2 months ago

shangshanzhizhe/Work_flow_of_population_genetics
整理常用的群体遗传学分析流程和脚本
  • 2.10.5 snakemake/call_snp/environment.yaml

Size: 452 KB - Last synced: 2 months ago - Pushed: 2 months ago

nf-core/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
  • 2.10.10.* modules/nf-core/optitype/environment.yml

Size: 146 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

is-the-biologist/QC_long_reads
  • 2.10.10 workflow/envs/environment.yml

Size: 157 MB - Last synced: 18 days ago - Pushed: 18 days ago

vhaghani26/epigenerator
  • 2.10.8 00_software/environment.yml

Size: 143 KB - Last synced: 29 days ago - Pushed: 29 days ago

f1lem0n/RNAnalyze
  • 2.10.10.* environment.yaml

Size: 8.24 MB - Last synced: 13 days ago - Pushed: 15 days ago

gboeing/osmnx
OSMnx is a Python package to easily download, model, analyze, and visualize street networks and other geospatial features from OpenStreetMap.
  • 2.10.10 environments/docker/environment.yml
  • 2.10.10 environments/linux/environment.yml

Size: 7.24 MB - Last synced: 6 days ago - Pushed: 8 days ago

pablorr24/metagenomics_snakemake
Snakemake-based pipeline for metagenomics classification. Currently support short-reads Illumina Sequences and long-reads ONT Sequences.
  • 2.10.10 environment.yml

Size: 75.2 KB - Last synced: 7 days ago - Pushed: 8 days ago