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GitHub / eudesbarbosa / snappy-pipeline
SNAPPY Nucleic Acid Processing in Python
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/eudesbarbosa%2Fsnappy-pipeline
Fork of bihealth/snappy-pipeline
Stars: 0
Forks: 0
Open Issues: 0
License: mit
Language: Python
Repo Size: 2.16 MB
Dependencies:
1,032
Created: over 3 years ago
Updated: over 2 years ago
Last pushed: over 1 year ago
Last synced: over 1 year ago
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Dependencies
.github/workflows/ci.yml
actions
- AndreMiras/coveralls-python-action develop composite
- actions/checkout v2 composite
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- trimadap r11
- bioconductor-annotationdbi
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- bioconductor-bsgenome.hsapiens.1000genomes.hs37d5
- bioconductor-bsgenome.hsapiens.ucsc.hg38
- bioconductor-genomicranges
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- bioconductor-txdb.hsapiens.ucsc.hg38.knowngene
- r-base
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environment.yml
pypi
- PyYAML >=6.0
- altamisa >=0.2.6
- attrs *
- biomedsheets >=0.11.4
- fasteners ==0.17.3
- jinja2 >=3.1.2
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- termcolor ==1.1.0
- varfish-cli >=0.2.0
- vcfpy >=0.13.2
requirements/dev.txt
pypi
- ipython * development
- pytest-sugar * development
- sphinx * development
- sphinx_rtd_theme * development
- black ==22.8.0 test
- coverage ==6.4.4 test
- coveralls * test
- flake8 ==4.0.1 test
- flake8-import-order ==0.18.1 test
- isort ==5.10.1 test
- pyfakefs ==4.6.3 test
- pytest ==7.1.3 test
- pytest-cov ==3.0.0 test
- pytest-flake8 ==1.1.1 test
- pytest-mock ==3.8.2 test
- snakefmt ==0.6.1 test