Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: bioconductor-edger

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/bioconductor-edger

Dependent Repos 36

villegar/DoGE
Differential Gene Expression Analysis Pipeline
  • 3.28.0.* environment.yml

Size: 16 MB - Last synced: 10 months ago - Pushed: almost 3 years ago

brucemoran/RNAseq_kallisto
RNAseq with Kallisto
  • environment.yaml

Size: 52.7 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

TheJacksonLaboratory/sbas
CloudOS Digital Research Environment
  • environment.yml

Size: 159 MB - Last synced: 2 months ago - Pushed: over 2 years ago

eQTLGen/DataQC
eQTL data QC pipeline for eQTLGen phase II project.
  • 3.32.1.* environment.yml

Size: 13.2 MB - Last synced: 3 months ago - Pushed: 3 months ago

AnimalGenomicsETH/bovine-graphs
Integrate multiple genome assemblies into a pangenome graph
  • envs/environment.yml

Size: 23.4 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

eQTL-Catalogue/rnaseq
RNA-seq quantification pipeline used by the eQTL Catalogue
  • 3.24.1.* containers/default/environment.yml

Size: 51.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

qbicsoftware/rmageddon-cli
A small linting command line tool for R container evaluation
  • environment.yml
  • tests/environment.yml

Size: 126 KB - Last synced: 11 days ago - Pushed: almost 2 years ago

Bishop-Laboratory/LiverDB
  • preprocess/environment.yml

Size: 94.6 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

web-mev/mev-normalize
  • 3.32.0 docker/environment.yml

Size: 16.6 KB - Last synced: 23 days ago - Pushed: 4 months ago

web-mev/mev-edgeR
Implementation of Bioconductor's edgeR for basic differential gene expression analysis
  • 3.32.0 docker/environment.yml

Size: 18.6 KB - Last synced: 23 days ago - Pushed: 3 months ago

dbeisser/taxmapper
  • environment.yaml

Size: 1.33 MB - Last synced: over 1 year ago

rargelaguet/mouse_organogenesis_10x_multiome_publication
Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  • rna/snakemake/environment.yaml

Size: 2.17 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

Ninomoriaty/m6APipe
  • 3.24.1 environment.yml

Last synced: about 1 year ago

Ninomoriaty/circPipe
FTW
  • 3.22.5.* environment.yml

Last synced: about 1 year ago

canceromics/MeRIPseqPipe
MeRIPseqPipe：An integrated analysis pipeline for MeRIP-seq data based on Nextflow.
  • 3.26.0.* environment.yml

Size: 38 MB - Last synced: 3 days ago - Pushed: about 2 years ago

tialiv/Cell_line_bulk_seq_202011
Bulk RNA sequencing project on ovarian cell lines (COV434, KGN, primary cells) after exposure to DMSO, DES 10-6M & 10-10M and KTZ 10-5M & 10-9M.
  • 3.32.1.* environment.yml

Size: 12.9 MB - Last synced: 20 days ago - Pushed: over 1 year ago

andrealauria104/ngsRtools
A Suite of R Packages for NGS-based Epigenomic Data Analysis.
  • 3.28.0.* data/environment.yml

Size: 714 KB - Last synced: about 1 month ago - Pushed: about 1 year ago

lifebit-ai/nf-rnaseq-salmon
  • 3.26.5.* environment.yml

Size: 69.9 MB - Last synced: 28 days ago - Pushed: about 1 year ago

lazyky/meripseqpipe
MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.
  • 3.26.0.* environment.yml

Size: 520 KB - Last synced: 7 months ago - Pushed: almost 3 years ago

greenelab/2022-cf-sputum
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways
  • 3.28.0 environment.yml

Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago

kevinpryan/caf-subtype-analysis
  • 3.36.0 environment.yml

Size: 56.9 MB - Last synced: 8 months ago - Pushed: 8 months ago

leipzig/m6a
Reproduction/refactor of Dominissini et al Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq
  • 3.26.0.* meripseqpipe/environment.yml

Size: 182 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow
  • 3.36.0 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

gonzalosm98/scRNA-SeqAnalysis
  • 3.32.1 environment.yml

Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

dib-lab/elvers
(formerly eelpond) an automated RNA-Seq workflow system
  • 3.20.7.* elvers/rules/edgeR/environment.yml

Size: 106 MB - Last synced: 4 months ago - Pushed: over 3 years ago

nextflowteam/nf-core-example
  • 3.24.1.* environment.yml

Size: 4.14 MB - Last synced: over 1 year ago

eudesbarbosa/snappy-pipeline Fork of bihealth/snappy-pipeline
SNAPPY Nucleic Acid Processing in Python
  • snappy_wrappers/wrappers/cbioportal/rank_expression/environment.yaml
  • snappy_wrappers/wrappers/cbioportal/rpkm_expression/environment.yaml

Size: 2.16 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

naveenluke/rnaseq Fork of nf-core/rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
  • 3.24.1.* environment.yml

Size: 55.4 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

yamaton/test-binder
Test creating an environment for Jupyter
  • binder/environment.yml

Size: 1.24 MB - Last synced: 4 months ago - Pushed: 4 months ago

lkmklsmn/DrivAER
DrivAER: Identification of Driving transcriptional programs using AutoEncoder based Relevance scores
  • 3.28.0 environment.yml

Size: 116 MB - Last synced: 7 months ago - Pushed: over 3 years ago

mbosio85/nf-core-rnaseq
  • 3.26.5.* environment.yml

Size: 48.9 MB - Last synced: about 1 year ago - Pushed: about 4 years ago

russHyde/bfx_201909
Statistical Bioinformatics presentation
  • 3.24.3.* envs/environment.yml

Size: 327 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

stephenslab/dsc-log-fold-change
dsc to compare approaches to estimating/testing log-fold-change from counts
  • environment.yaml

Size: 19.3 MB - Last synced: 9 months ago - Pushed: about 5 years ago

IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020
  • 3.26.0 environment.yml

Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago

fuxialexander/sox9
  • environment.yml

Size: 12.7 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago

mtinti/Gustavo_DIA_RBP
  • environment.yml

Size: 11.1 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

mtinti/calvin_tfr2
  • environment.yml

Size: 25.1 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

mtinti/calvin_tfr
  • environment.yml

Size: 41.6 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

JohannesKersting/DysRegNetR
  • >=3.36 environment.yaml

Size: 41 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

lifebit-ai/rnaseq
  • 3.20.7.* environment.yml

Size: 5.36 MB - Last synced: 28 days ago - Pushed: over 5 years ago

transXpress/transXpress-nextflow
transXpress: a Nextflow pipeline for rapid de novo transcriptome assembly and annotation
  • 3.26.5 environment.yml

Size: 47 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

SystemsBiologist/PSCAN
  • 3.24.3 environment.yml

Size: 14.2 MB - Last synced: about 1 month ago - Pushed: over 4 years ago

jhgille2/rna_seq_pipeline_template
WIP reproducible pipeline for rna seq differential expression analysis
  • 3.36.0 environment.yml

Size: 77.1 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

olavurmortensen/MF9155_env
Conda environment for course MF9155 at UiO.
  • 3.28.0.* environment.yml

Size: 8.79 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

Dayueban/rnaseq Fork of nf-core/rnaseq
RNA sequencing analysis pipeline using STAR or HISAT2, with gene counts and quality control
  • 3.24.1.* environment.yml

Size: 48.9 MB - Last synced: 10 months ago - Pushed: about 5 years ago

TeamPerie/Report_Daphne Fork of dvginneken/Reproduce_Thesis_InstitutCurie
  • 3.40.0 environment.yml

Size: 32.6 MB - Last synced: 10 months ago - Pushed: 10 months ago

cguyomar/smrnaseq Fork of nf-core/smrnaseq
A small-RNA sequencing analysis pipeline
  • 3.26.5.* environment.yml

Size: 6.59 MB - Last synced: 10 months ago - Pushed: almost 3 years ago

davidecarlson/Snakemake_diff_gene_expr
Differential Gene Expression with Snakemake
  • 3.32.0 environment.yml

Size: 37.1 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

zxky-sys/meripseqpipe Fork of lazyky/meripseqpipe
MeRIP-seq analysis pipeline arranged multiple alignment tools, peakCalling tools, Merge Peaks' methods and methylation analysis methods.
  • 3.26.0.* environment.yml

Size: 56.3 MB - Last synced: 10 months ago - Pushed: over 3 years ago

brickmanlab/custom-containers
Custom Docker images
  • 3.26.0.* image/environment.yml

Size: 44.9 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

lqsae/haplotyped-methylome Fork of scottgigante/haplotyped-methylome
Reproducibility workflow for Gigante et al., 2018: Using long-read sequencing to detect imprinted DNA methylation
  • environment.yml

Size: 4.96 MB - Last synced: about 1 month ago - Pushed: about 5 years ago

shashwatsahay/smrnaseq Fork of nf-core/smrnaseq
A small-RNA sequencing analysis pipeline
  • 3.26.5.* environment.yml

Size: 4.24 MB - Last synced: 10 months ago - Pushed: over 4 years ago

Mye-InfoBank/SIMBA
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.
  • 4.0.2 docker/rpy/environment.yml

Size: 981 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

adamd3/BactSeq
A nextflow pipeline for performing bacterial RNA-Seq data analysis.
  • >=3.36 environment.yml

Size: 2.36 MB - Last synced: 4 months ago - Pushed: 4 months ago

aemann01/ads_plaque
Metatranscriptomics and the arginine deiminase pathway
  • 3.36.0.* 03-diff_abundance/environment.yml

Size: 16.1 MB - Last synced: 2 months ago - Pushed: 2 months ago

quevedor2/mini_projects
Repository for mini projects that don't warrant a repo of their own
  • 3.32.1 PDAC_AhR/envs/environment.yaml

Size: 657 KB - Last synced: 14 days ago - Pushed: 15 days ago

nf-core/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
  • 3.32.0.* modules/nf-core/homer/maketagdirectory/environment.yml

Size: 146 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

hds-sandbox/NGS_summer_course_Aarhus
Repository for the NGS summer course at Aarhus university
  • 3.36 Environments/environment.yml

Size: 134 MB - Last synced: about 12 hours ago - Pushed: 1 day ago