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GitHub / aemann01 / ads_plaque
Metatranscriptomics and the arginine deiminase pathway
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aemann01%2Fads_plaque
Stars: 2
Forks: 0
Open Issues: 0
License: None
Language: Jupyter Notebook
Repo Size: 16.1 MB
Dependencies:
32
Created: about 3 years ago
Updated: 4 months ago
Last pushed: 3 months ago
Last synced: 3 months ago
Files
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Readme
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Dependencies
- bioconductor-deseq2 1.34.0.*
- bioconductor-edger 3.36.0.*
- bioconductor-glimma 2.4.0.*
- bioconductor-limma 3.50.1.*
- cutadapt 4.0.*
- entrez-direct 16.2.*
- jupyter 1.0.0.*
- r-base 4.1.2.*
- r-irkernel 1.3.*
- r-stringi 1.7.6.*
environment.yml
conda
- bowtie2 2.4.5.*
- cblaster 1.3.12.*
- cutadapt 3.3.*
- diamond 2.0.15.*
- fastqc 0.11.9.*
- goatools 1.2.3.*
- hmmer 3.3.2.*
- interproscan 5.55_88.0.*
- ipython 8.3.0.*
- kofamscan 1.3.0.*
- kraken2 2.1.2.*
- mcl 14.137.*
- pandas 1.4.3.*
- parallel 20220222.*
- pear 0.9.6.*
- python 3.8.*
- ruby 2.6.5p114.*
- samtools 1.12.*
- seqtk 1.3.*
- star 2.7.5c.*
- subread 2.0.1.*
- vsearch 2.21.1.*