Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: conda: vsearch
View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/vsearch
Dependent Repos 19
ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)- 2.7.0 containers/qiime2-2019.10/environment.yml
Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago
hivlab/virome-wrappers
snakemake wrappers- vsearch/chimera/environment.yaml
Size: 30.5 MB - Last synced: about 1 year ago - Pushed: about 2 years ago
lfnothias/qiime2
- 2.7.0.* environment.yml
Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
aemann01/diet_calculus
Detection of diet from archaeological dental calculus project- 1.1.3.* 04-synthetic_real_dataset_processing/environment.yml
- 1.1.3.* environment.yml
Size: 40.8 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
evoosa/16S_bacteria_detector
Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms- 2.7.0 src/environment.yml
Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
manutamminen/epicpcr_6
- 2.18.0 env/environment.yml
Size: 8.84 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
bokulich-lab/advanced-comp-bio-tutorial
Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022- 2.7.0 environment.yml
Size: 77.9 MB - Last synced: 12 months ago - Pushed: 12 months ago
omicsclass/biodocker
docker images for bioinformatics- 2.7.0.* ampliseq-q2/environment.yml
Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago
NatPombubpa/Qiime2_2022.8_binder
Qiime2_2022.8_binder test- 2.21.1.* environment.yml
Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago
meglecz/vtam_benchmark_EM Fork of aitgon/vtam_benchmark
fork after integrating shark analyes to develeop- environment.yml
Size: 210 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
ggabernet/nf-core-airrflow Fork of nf-core/airrflow
Please use the original pipeline http://github.com/nf-core/airrflow- 2.11.1.* environment.yml
Size: 8.26 MB - Last synced: 21 days ago - Pushed: 21 days ago
percyfal/snakemake-rules
Library of snakemake rules.- environment.yaml
Size: 3.85 MB - Last synced: about 1 year ago - Pushed: over 5 years ago
manutamminen/epicpcr_7
- 2.18.0 env/environment.yml
Size: 2.98 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
bioinformatist/nf-core-metaamplicon
A pipeline for (meta-) analysis of amplicon data- 2.8.0.* environment.yml
Size: 52.7 KB - Last synced: about 1 year ago - Pushed: over 5 years ago
USDA-ARS-GBRU/keio
- 2.7.0 environment.yml
Size: 1.91 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
MikeTrizna/binder-qiime
Testing if qiime can be installed and used in Binder- 2.7.0.* environment.yml
Size: 6.84 KB - Last synced: about 2 months ago - Pushed: about 5 years ago
Hajibabaei-Lab/SCVUC_COI_metabarcode_pipeline
Snakemake bioinformatic pipeline to process COI mtDNA metabarcodes- 2.14.1 environment.yml
Size: 352 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago
aemann01/afribiota
- 2.15.1.* environment.yml
Size: 2.04 MB - Last synced: 4 months ago - Pushed: 4 months ago
aemann01/terry_tb_sim
Simulation analyses for Austin et al. /////- 1.1.3.* environment.yml
Size: 154 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
aemann01/burkina_faso_its
- 2.15.2.* environment.yml
Size: 1.63 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
aemann01/rpo_gene
- 2.15.0.* environment.yml
Size: 990 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
mwang87/GNPS_Volatility_Notebooks
- 2.7.0.* environment.yml
Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
Dayueban/ampliseq Fork of nf-core/ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2- 2.7.0.* environment.yml
Size: 229 KB - Last synced: 10 months ago - Pushed: about 5 years ago
alarawms/sunbeam Fork of sunbeam-labs/sunbeam
A robust, extensible metagenomics pipeline- environment.yml
Size: 1.3 MB - Last synced: 10 months ago - Pushed: about 4 years ago
jeevannavar/epicpcr_6 Fork of manutamminen/epicpcr_6
- 2.18.0 env/environment.yml
Size: 8.84 MB - Last synced: 8 months ago - Pushed: over 2 years ago
nf-core/crisprseq
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).- 2.21.1.* modules/nf-core/vsearch/cluster/environment.yml
- 2.21.1.* modules/nf-core/vsearch/sort/environment.yml
Size: 6.84 MB - Last synced: 5 days ago - Pushed: 5 days ago
aemann01/ads_plaque
Metatranscriptomics and the arginine deiminase pathway- 2.21.1.* environment.yml
Size: 16.1 MB - Last synced: 2 months ago - Pushed: 2 months ago
marchoeppner/eutaxpro
Taxonomic profiling of eukaroyte genomes using amplicon sequencing- 2.27.0.* modules/vsearch/cluster_size/environment.yml
- 2.27.0.* modules/vsearch/derep/environment.yml
- 2.27.0.* modules/vsearch/fastqfilter/environment.yml
- 2.27.0.* modules/vsearch/fastqmerge/environment.yml
- 2.27.0.* modules/vsearch/fastxuniques/environment.yml
- 2.27.0.* modules/vsearch/orient/environment.yml
- 2.27.0.* modules/vsearch/sintax/environment.yml
- 2.27.0.* modules/vsearch/sortbysize/environment.yml
- 2.27.0.* modules/vsearch/uchime/denovo/environment.yml
- 2.27.0.* modules/vsearch/uchime3/environment.yml
- 2.27.0.* modules/vsearch/unoise/environment.yml
- 2.27.0.* modules/vsearch/usearch_global/environment.yml
Size: 842 KB - Last synced: 22 days ago - Pushed: 22 days ago
nf-core/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!- 2.21.1.* modules/nf-core/vsearch/cluster/environment.yml
- 2.21.1.* modules/nf-core/vsearch/sintax/environment.yml
- 2.21.1.* modules/nf-core/vsearch/sort/environment.yml
- 2.21.1.* modules/nf-core/vsearch/usearchglobal/environment.yml
Size: 146 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
Eco-Flow/pollen-metabarcoding
A pipeline developled in collaboration with Exeter University- 2.21.1.* modules/nf-core/vsearch/sintax/environment.yml
Size: 2.31 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
biodiversitydata-se/coidb
A small python package for downloading and processing metabarcoding references- environment.yml
Size: 3.41 MB - Last synced: 3 days ago - Pushed: 3 days ago
bio-raum/FooDMe2
A nextflow pipeline for the identification of species from mixed samples based on mitochondrial amplicons- 2.27.0.* modules/vsearch/cluster_size/environment.yml
- 2.27.0.* modules/vsearch/derep/environment.yml
- 2.27.0.* modules/vsearch/fastqfilter/environment.yml
- 2.27.0.* modules/vsearch/fastqmerge/environment.yml
- 2.27.0.* modules/vsearch/fastxuniques/environment.yml
- 2.27.0.* modules/vsearch/orient/environment.yml
- 2.27.0.* modules/vsearch/sintax/environment.yml
- 2.27.0.* modules/vsearch/sortbysize/environment.yml
- 2.27.0.* modules/vsearch/uchime/denovo/environment.yml
- 2.27.0.* modules/vsearch/uchime3/environment.yml
- 2.27.0.* modules/vsearch/unoise/environment.yml
- 2.27.0.* modules/vsearch/usearch_global/environment.yml
Size: 771 KB - Last synced: 25 minutes ago - Pushed: 1 day ago