Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: vsearch

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/vsearch

Dependent Repos 19

ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
  • 2.7.0 containers/qiime2-2019.10/environment.yml

Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago

hivlab/virome-wrappers
snakemake wrappers
  • vsearch/chimera/environment.yaml

Size: 30.5 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

lfnothias/qiime2
  • 2.7.0.* environment.yml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

aemann01/diet_calculus
Detection of diet from archaeological dental calculus project
  • 1.1.3.* 04-synthetic_real_dataset_processing/environment.yml
  • 1.1.3.* environment.yml

Size: 40.8 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

evoosa/16S_bacteria_detector
Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms
  • 2.7.0 src/environment.yml

Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

aitgon/vtam
  • environment.yml

Size: 3.42 MB - Last synced: 16 days ago - Pushed: 8 months ago

gkhlab/igdiscover22
  • 2.15.2.* environment.yml

Last synced: about 1 year ago

manutamminen/epicpcr_6
  • 2.18.0 env/environment.yml

Size: 8.84 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

bokulich-lab/advanced-comp-bio-tutorial
Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022
  • 2.7.0 environment.yml

Size: 77.9 MB - Last synced: 12 months ago - Pushed: 12 months ago

omicsclass/biodocker
docker images for bioinformatics
  • 2.7.0.* ampliseq-q2/environment.yml

Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago

Pinjontall94/abed
  • 2.3.4 environment.yaml

Last synced: over 1 year ago

NatPombubpa/Qiime2_2022.8_binder
Qiime2_2022.8_binder test
  • 2.21.1.* environment.yml

Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago

meglecz/vtam_benchmark_EM Fork of aitgon/vtam_benchmark
fork after integrating shark analyes to develeop
  • environment.yml

Size: 210 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

ggabernet/nf-core-airrflow Fork of nf-core/airrflow
Please use the original pipeline http://github.com/nf-core/airrflow
  • 2.11.1.* environment.yml

Size: 8.26 MB - Last synced: 21 days ago - Pushed: 21 days ago

percyfal/snakemake-rules
Library of snakemake rules.
  • environment.yaml

Size: 3.85 MB - Last synced: about 1 year ago - Pushed: over 5 years ago

manutamminen/epicpcr_7
  • 2.18.0 env/environment.yml

Size: 2.98 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

bioinformatist/nf-core-metaamplicon
A pipeline for (meta-) analysis of amplicon data
  • 2.8.0.* environment.yml

Size: 52.7 KB - Last synced: about 1 year ago - Pushed: over 5 years ago

USDA-ARS-GBRU/keio
  • 2.7.0 environment.yml

Size: 1.91 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

MikeTrizna/binder-qiime
Testing if qiime can be installed and used in Binder
  • 2.7.0.* environment.yml

Size: 6.84 KB - Last synced: about 2 months ago - Pushed: about 5 years ago

Hajibabaei-Lab/SCVUC_COI_metabarcode_pipeline
Snakemake bioinformatic pipeline to process COI mtDNA metabarcodes
  • 2.14.1 environment.yml

Size: 352 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago

aemann01/afribiota
  • 2.15.1.* environment.yml

Size: 2.04 MB - Last synced: 4 months ago - Pushed: 4 months ago

aemann01/terry_tb_sim
Simulation analyses for Austin et al. /////
  • 1.1.3.* environment.yml

Size: 154 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

aemann01/burkina_faso_its
  • 2.15.2.* environment.yml

Size: 1.63 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

aemann01/rpo_gene
  • 2.15.0.* environment.yml

Size: 990 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

mwang87/GNPS_Volatility_Notebooks
  • 2.7.0.* environment.yml

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

Dayueban/ampliseq Fork of nf-core/ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
  • 2.7.0.* environment.yml

Size: 229 KB - Last synced: 10 months ago - Pushed: about 5 years ago

alarawms/sunbeam Fork of sunbeam-labs/sunbeam
A robust, extensible metagenomics pipeline
  • environment.yml

Size: 1.3 MB - Last synced: 10 months ago - Pushed: about 4 years ago

jeevannavar/epicpcr_6 Fork of manutamminen/epicpcr_6
  • 2.18.0 env/environment.yml

Size: 8.84 MB - Last synced: 8 months ago - Pushed: over 2 years ago

nf-core/crisprseq
A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).
  • 2.21.1.* modules/nf-core/vsearch/cluster/environment.yml
  • 2.21.1.* modules/nf-core/vsearch/sort/environment.yml

Size: 6.84 MB - Last synced: 5 days ago - Pushed: 5 days ago

aemann01/ads_plaque
Metatranscriptomics and the arginine deiminase pathway
  • 2.21.1.* environment.yml

Size: 16.1 MB - Last synced: 2 months ago - Pushed: 2 months ago

marchoeppner/eutaxpro
Taxonomic profiling of eukaroyte genomes using amplicon sequencing
  • 2.27.0.* modules/vsearch/cluster_size/environment.yml
  • 2.27.0.* modules/vsearch/derep/environment.yml
  • 2.27.0.* modules/vsearch/fastqfilter/environment.yml
  • 2.27.0.* modules/vsearch/fastqmerge/environment.yml
  • 2.27.0.* modules/vsearch/fastxuniques/environment.yml
  • 2.27.0.* modules/vsearch/orient/environment.yml
  • 2.27.0.* modules/vsearch/sintax/environment.yml
  • 2.27.0.* modules/vsearch/sortbysize/environment.yml
  • 2.27.0.* modules/vsearch/uchime/denovo/environment.yml
  • 2.27.0.* modules/vsearch/uchime3/environment.yml
  • 2.27.0.* modules/vsearch/unoise/environment.yml
  • 2.27.0.* modules/vsearch/usearch_global/environment.yml

Size: 842 KB - Last synced: 22 days ago - Pushed: 22 days ago

nf-core/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
  • 2.21.1.* modules/nf-core/vsearch/cluster/environment.yml
  • 2.21.1.* modules/nf-core/vsearch/sintax/environment.yml
  • 2.21.1.* modules/nf-core/vsearch/sort/environment.yml
  • 2.21.1.* modules/nf-core/vsearch/usearchglobal/environment.yml

Size: 146 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

Eco-Flow/pollen-metabarcoding
A pipeline developled in collaboration with Exeter University
  • 2.21.1.* modules/nf-core/vsearch/sintax/environment.yml

Size: 2.31 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

biodiversitydata-se/coidb
A small python package for downloading and processing metabarcoding references
  • environment.yml

Size: 3.41 MB - Last synced: 3 days ago - Pushed: 3 days ago

bio-raum/FooDMe2
A nextflow pipeline for the identification of species from mixed samples based on mitochondrial amplicons
  • 2.27.0.* modules/vsearch/cluster_size/environment.yml
  • 2.27.0.* modules/vsearch/derep/environment.yml
  • 2.27.0.* modules/vsearch/fastqfilter/environment.yml
  • 2.27.0.* modules/vsearch/fastqmerge/environment.yml
  • 2.27.0.* modules/vsearch/fastxuniques/environment.yml
  • 2.27.0.* modules/vsearch/orient/environment.yml
  • 2.27.0.* modules/vsearch/sintax/environment.yml
  • 2.27.0.* modules/vsearch/sortbysize/environment.yml
  • 2.27.0.* modules/vsearch/uchime/denovo/environment.yml
  • 2.27.0.* modules/vsearch/uchime3/environment.yml
  • 2.27.0.* modules/vsearch/unoise/environment.yml
  • 2.27.0.* modules/vsearch/usearch_global/environment.yml

Size: 771 KB - Last synced: 25 minutes ago - Pushed: 1 day ago