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GitHub / evoosa / 16S_bacteria_detector

Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/evoosa%2F16S_bacteria_detector

Stars: 0
Forks: 0
Open Issues: 0

License: None
Language: Shell
Repo Size: 97.4 MB
Dependencies: 413

Created: over 3 years ago
Updated: almost 2 years ago
Last pushed: about 3 years ago
Last synced: about 1 year ago

Files

Readme

Dependencies

src/environment.yml conda

_libgcc_mutex 0.1
_openmp_mutex 4.5
_r-mutex 1.0.1
alsa-lib 1.2.3
arb-bio-tools 6.0.6
argon2-cffi 20.1.0
attrs 20.1.0
backcall 0.2.0
backports 1.0
backports.functools_lru_cache 1.6.1
bibtexparser 1.1.0
binutils_impl_linux-64 2.34
binutils_linux-64 2.34
bioconductor-biobase 2.42.0
bioconductor-biocgenerics 0.28.0
bioconductor-biocparallel 1.16.6
bioconductor-biostrings 2.50.2
bioconductor-dada2 1.10.0
bioconductor-delayedarray 0.8.0
bioconductor-genomeinfodb 1.18.1
bioconductor-genomeinfodbdata 1.2.1
bioconductor-genomicalignments 1.18.1
bioconductor-genomicranges 1.34.0
bioconductor-iranges 2.16.0
bioconductor-rsamtools 1.34.0
bioconductor-s4vectors 0.20.1
bioconductor-shortread 1.40.0
bioconductor-summarizedexperiment 1.12.0
bioconductor-xvector 0.22.0
bioconductor-zlibbioc 1.28.0
biom-format 2.1.8
blas 2.17
blast 2.9.0
bleach 3.1.5
bokeh 2.1.1
boost-cpp 1.70.0
bowtie2 2.4.1
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bzip2 1.0.8
ca-certificates 2020.10.14
cachecontrol 0.12.6
cairo 1.16.0
certifi 2020.6.20
cffi 1.14.1
chardet 3.0.4
click 7.1.2
cryptography 3.0
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cython 0.29.21
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expat 2.2.9
fastcluster 1.1.26
fasttree 2.1.10
fontconfig 2.13.1
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fribidi 1.0.10
future 0.18.2
gcc_impl_linux-64 7.5.0
gcc_linux-64 7.5.0
gettext 0.19.8.1
gfortran_impl_linux-64 7.5.0
gfortran_linux-64 7.5.0
giflib 5.2.1
glib 2.65.0
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gsl 2.5
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gxx_linux-64 7.5.0
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jpeg 9d
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libffi 3.2.1
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llvm-openmp 10.0.1
lockfile 0.12.2
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mafft 7.471
make 4.3
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matplotlib 3.2.2
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nbconvert 5.6.1
nbformat 5.0.7
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nose 1.3.7
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numpy 1.19.1
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pcre 8.44
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perl-business-isbn-data 20140910.003
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py 1.9.0
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q2-alignment 2020.8.0
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q2-emperor 2020.8.0
q2-feature-classifier 2020.8.0
q2-feature-table 2020.8.0
q2-fragment-insertion 2020.8.0
q2-gneiss 2020.8.0
q2-longitudinal 2020.8.0
q2-metadata 2020.8.0
q2-phylogeny 2020.8.0
q2-quality-control 2020.8.0
q2-quality-filter 2020.8.0
q2-sample-classifier 2020.8.0
q2-taxa 2020.8.0
q2-types 2020.8.0
q2-vsearch 2020.8.0
q2cli 2020.8.0
q2templates 2020.8.0
qiime2 2020.8.0
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r-callr 3.4.3
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r-desc 1.2.0
r-digest 0.6.25
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