Ecosyste.ms: Repos
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Package Usage: conda: perl-io-zlib
View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/perl-io-zlib
Dependent Repos 26
ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)- 1.10 containers/qiime2-2019.10/environment.yml
Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago
adenger/subpred3
Code for the manuscript "Optimized data set and feature construction for substrate prediction of membrane transporters"- 1.10 environment.yml
Size: 50.6 MB - Last synced: 20 days ago - Pushed: 10 months ago
lfnothias/qiime2
- 1.10.* environment.yml
Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
rchapman2000/de-novo-assembly-pipeline
- 1.11 environment.yml
Size: 60.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
MPI-SHH-SummerSchool/dag-material
- 1.10.* Hands on Introduction to Ancient Microbiome Analysis/environment.yml
Size: 489 MB - Last synced: 9 months ago - Pushed: over 2 years ago
evoosa/16S_bacteria_detector
Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms- 1.10 src/environment.yml
Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
bokulich-lab/advanced-comp-bio-tutorial
Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022- 1.10 environment.yml
Size: 77.9 MB - Last synced: 12 months ago - Pushed: 12 months ago
kaspermunch/sap
Statistical Assignment Package- 1.11 environment.yml
Size: 51.1 MB - Last synced: 7 months ago - Pushed: about 1 year ago
omicsclass/biodocker
docker images for bioinformatics- 1.10.* ampliseq-q2/environment.yml
Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago
ctlab/GScour
Genome-wide detection of positive selection- 1.10 environment.yml
Size: 1.89 MB - Last synced: 28 days ago - Pushed: 11 months ago
mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow- 1.11 environment.yml
Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
scilifelab-lts/b_henriques-normark_1606
- 1.10 bianca-env/environment.yml
- 1.10 envs/environment.yaml
Size: 30.6 MB - Last synced: over 1 year ago
NatPombubpa/Qiime2_2022.8_binder
Qiime2_2022.8_binder test- 1.11.* environment.yml
Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago
deconvolute/subgenome
Identification of druggable genes in pathogenic bacteria – subtractive genomics approach- 1.11 environment.yml
Size: 10.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
fieldima/adequacy_of_PCMs Fork of phylo-lab-usc/fiels_workbench
This repository contains all the scripts for analyzing the adequacy of the most commonly used phylogenetic comparative models for gene expression datasets.- 1.10 Normalization_Reanalysis/environment.yml
Size: 350 MB - Last synced: 11 months ago - Pushed: over 1 year ago
SteMIDIfactory/P-DOR
Quick and easy outbreak reconstruction pipeline- 1.11 environment.yml
Size: 37.7 MB - Last synced: 3 months ago - Pushed: 8 months ago
duncanberger/nxf-BATQual
Bacterial genome assembly, annotation and typing pipeline.- 1.14 environment.yaml
Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago
liaoherui/StrainAnalyze
StrainAnalyze: a user-friendly bioinformatics pipeline used to analyze given identified bacterial strains in short reads.- 1.14 environment.yaml
Size: 14.6 KB - Last synced: about 1 year ago - Pushed: about 1 year ago
neavemj/mappd
Metagenomic Analysis Pipeline for Pathogen Discovery- 1.10 environment.yaml
Size: 924 KB - Last synced: 8 months ago - Pushed: 8 months ago
IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020- 1.10 environment.yml
Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago
greenkidneybean/bchb524_final
- 1.10 environment.yml
Size: 174 KB - Last synced: about 1 year ago - Pushed: over 4 years ago
MikeTrizna/binder-qiime
Testing if qiime can be installed and used in Binder- 1.10.* environment.yml
Size: 6.84 KB - Last synced: about 2 months ago - Pushed: about 5 years ago
jaswindersingh2/RNAcmap2
Improved RNA homology detection and alignment by automatic iterative search in an expanded database- 1.10 environment.yaml
Size: 345 MB - Last synced: about 1 year ago - Pushed: about 2 years ago
bfairkun/design-mpeseq-primers
For designing RT primers with blast search, tm constraints, etc- 1.10 environment.yaml
Size: 28.3 KB - Last synced: 7 months ago - Pushed: almost 5 years ago
transXpress/transXpress-nextflow
transXpress: a Nextflow pipeline for rapid de novo transcriptome assembly and annotation- 1.10 environment.yml
Size: 47 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
ErasmusMC-Bioinformatics/WeFaceNano
Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).- 1.10 environment.yml
Size: 6.78 MB - Last synced: about 1 month ago - Pushed: about 3 years ago
mwang87/GNPS_Volatility_Notebooks
- 1.10.* environment.yml
Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
jhgille2/cs590_2023
Random files for CS590 Spring 2023- 1.14 e9/environment.yml
Size: 39.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
gaojunxuan/bcb330_project
- 1.10 environment.yml
Size: 17.2 MB - Last synced: about 1 year ago - Pushed: about 2 years ago
oscarlr/IGenotyper_depr
- 1.10 environment.yml
Size: 4.9 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago
TRON-Bioinformatics/easyfuse-src
EasyFuse source code to build python package- 1.11 environment.yml
Size: 105 MB - Last synced: 9 months ago - Pushed: 9 months ago
robert-altwasser/umi-processing
- 1.11 env/environment.yml
Size: 340 KB - Last synced: 5 months ago - Pushed: 6 months ago
appliedbinf/pima-docker2
Volume based Pima Docker- 1.11 Internal/environment.yml
Size: 10.7 MB - Last synced: 6 months ago - Pushed: 6 months ago
unicorn-23/GwasWA
- 1.14 environment.yml
Size: 75.5 MB - Last synced: 5 months ago - Pushed: 5 months ago
deepomicslab/LocalHGT
Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.- 1.14 environment.yml
Size: 65.8 MB - Last synced: 19 days ago - Pushed: 19 days ago