Ecosyste.ms: Repos

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Package Usage: conda: perl-io-zlib

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/perl-io-zlib

Dependent Repos 26

ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
  • 1.10 containers/qiime2-2019.10/environment.yml

Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago

adenger/subpred3
Code for the manuscript "Optimized data set and feature construction for substrate prediction of membrane transporters"
  • 1.10 environment.yml

Size: 50.6 MB - Last synced: 20 days ago - Pushed: 10 months ago

lfnothias/qiime2
  • 1.10.* environment.yml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

rchapman2000/de-novo-assembly-pipeline
  • 1.11 environment.yml

Size: 60.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

MPI-SHH-SummerSchool/dag-material
  • 1.10.* Hands on Introduction to Ancient Microbiome Analysis/environment.yml

Size: 489 MB - Last synced: 9 months ago - Pushed: over 2 years ago

evoosa/16S_bacteria_detector
Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms
  • 1.10 src/environment.yml

Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

bokulich-lab/advanced-comp-bio-tutorial
Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022
  • 1.10 environment.yml

Size: 77.9 MB - Last synced: 12 months ago - Pushed: 12 months ago

kaspermunch/sap
Statistical Assignment Package
  • 1.11 environment.yml

Size: 51.1 MB - Last synced: 7 months ago - Pushed: about 1 year ago

Bernt/MITOS
MITOS
  • 1.10.* environment.yaml

Last synced: 14 days ago

omicsclass/biodocker
docker images for bioinformatics
  • 1.10.* ampliseq-q2/environment.yml

Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago

ctlab/GScour
Genome-wide detection of positive selection
  • 1.10 environment.yml

Size: 1.89 MB - Last synced: 28 days ago - Pushed: 11 months ago

mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow
  • 1.11 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

scilifelab-lts/b_henriques-normark_1606
  • 1.10 bianca-env/environment.yml
  • 1.10 envs/environment.yaml

Size: 30.6 MB - Last synced: over 1 year ago

NatPombubpa/Qiime2_2022.8_binder
Qiime2_2022.8_binder test
  • 1.11.* environment.yml

Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago

deconvolute/subgenome
Identification of druggable genes in pathogenic bacteria – subtractive genomics approach
  • 1.11 environment.yml

Size: 10.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

fieldima/adequacy_of_PCMs Fork of phylo-lab-usc/fiels_workbench
This repository contains all the scripts for analyzing the adequacy of the most commonly used phylogenetic comparative models for gene expression datasets.
  • 1.10 Normalization_Reanalysis/environment.yml

Size: 350 MB - Last synced: 11 months ago - Pushed: over 1 year ago

SteMIDIfactory/P-DOR
Quick and easy outbreak reconstruction pipeline
  • 1.11 environment.yml

Size: 37.7 MB - Last synced: 3 months ago - Pushed: 8 months ago

duncanberger/nxf-BATQual
Bacterial genome assembly, annotation and typing pipeline.
  • 1.14 environment.yaml

Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago

liaoherui/StrainAnalyze
StrainAnalyze: a user-friendly bioinformatics pipeline used to analyze given identified bacterial strains in short reads.
  • 1.14 environment.yaml

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

neavemj/mappd
Metagenomic Analysis Pipeline for Pathogen Discovery
  • 1.10 environment.yaml

Size: 924 KB - Last synced: 8 months ago - Pushed: 8 months ago

IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020
  • 1.10 environment.yml

Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago

greenkidneybean/bchb524_final
  • 1.10 environment.yml

Size: 174 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

MikeTrizna/binder-qiime
Testing if qiime can be installed and used in Binder
  • 1.10.* environment.yml

Size: 6.84 KB - Last synced: about 2 months ago - Pushed: about 5 years ago

jaswindersingh2/RNAcmap2
Improved RNA homology detection and alignment by automatic iterative search in an expanded database
  • 1.10 environment.yaml

Size: 345 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

bfairkun/design-mpeseq-primers
For designing RT primers with blast search, tm constraints, etc
  • 1.10 environment.yaml

Size: 28.3 KB - Last synced: 7 months ago - Pushed: almost 5 years ago

transXpress/transXpress-nextflow
transXpress: a Nextflow pipeline for rapid de novo transcriptome assembly and annotation
  • 1.10 environment.yml

Size: 47 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

ErasmusMC-Bioinformatics/WeFaceNano
Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).
  • 1.10 environment.yml

Size: 6.78 MB - Last synced: about 1 month ago - Pushed: about 3 years ago

mwang87/GNPS_Volatility_Notebooks
  • 1.10.* environment.yml

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

jhgille2/cs590_2023
Random files for CS590 Spring 2023
  • 1.14 e9/environment.yml

Size: 39.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

gaojunxuan/bcb330_project
  • 1.10 environment.yml

Size: 17.2 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

oscarlr/IGenotyper_depr
  • 1.10 environment.yml

Size: 4.9 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago

TRON-Bioinformatics/easyfuse-src
EasyFuse source code to build python package
  • 1.11 environment.yml

Size: 105 MB - Last synced: 9 months ago - Pushed: 9 months ago

robert-altwasser/umi-processing
  • 1.11 env/environment.yml

Size: 340 KB - Last synced: 5 months ago - Pushed: 6 months ago

appliedbinf/pima-docker2
Volume based Pima Docker
  • 1.11 Internal/environment.yml

Size: 10.7 MB - Last synced: 6 months ago - Pushed: 6 months ago

unicorn-23/GwasWA
  • 1.14 environment.yml

Size: 75.5 MB - Last synced: 5 months ago - Pushed: 5 months ago

deepomicslab/LocalHGT
Detect complete horizontal gene transfer (HGT) event rapidly and accurately from complex metagenomics data.
  • 1.14 environment.yml

Size: 65.8 MB - Last synced: 19 days ago - Pushed: 19 days ago