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GitHub / adenger / subpred3

Code for the manuscript "Optimized data set and feature construction for substrate prediction of membrane transporters"

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adenger%2Fsubpred3

Stars: 1
Forks: 0
Open Issues: 0

License: mit
Language: Jupyter Notebook
Repo Size: 50.6 MB
Dependencies: 191

Created: almost 2 years ago
Updated: 2 days ago
Last pushed: 10 months ago
Last synced: 2 days ago

Topics: bioinformatics-analysis, bioinformatics-pipeline, computational-biology, machine-learning

Files

Readme

Dependencies

environment.yml conda

_libgcc_mutex 0.1
_openmp_mutex 4.5
appdirs 1.4.4
argon2-cffi 21.3.0
argon2-cffi-bindings 21.2.0
asttokens 2.0.5
attrs 21.4.0
backcall 0.2.0
beautifulsoup4 4.11.1
black 19.10b0
blas 1.0
blast 2.12.0
bleach 4.1.0
bottleneck 1.3.4
brotli 1.0.9
bzip2 1.0.8
c-ares 1.18.1
ca-certificates 2022.6.15
cd-hit 4.8.1
certifi 2022.6.15
cffi 1.15.0
click 8.0.4
curl 7.82.0
cycler 0.11.0
dbus 1.13.18
debugpy 1.5.1
decorator 5.1.1
defusedxml 0.7.1
entrez-direct 16.2
entrypoints 0.4
et_xmlfile 1.1.0
executing 0.8.3
expat 2.4.4
fastcluster 1.2.4
flake8 4.0.1
fontconfig 2.13.1
fonttools 4.25.0
freetype 2.11.0
giflib 5.2.1
glib 2.69.1
gst-plugins-base 1.14.0
gstreamer 1.14.0
icu 58.2
imbalanced-learn 0.7.0
importlib-metadata 4.11.3
ipykernel 6.9.1
ipython 8.3.0
ipython_genutils 0.2.0
ipywidgets 7.6.5
jedi 0.18.1
jinja2 3.0.3
joblib 1.1.0
jpeg 9e
jsonschema 4.4.0
jupyter 1.0.0
jupyter_client 7.2.2
jupyter_console 6.4.3
jupyter_core 4.10.0
jupyterlab_pygments 0.1.2
jupyterlab_widgets 1.0.0
kiwisolver 1.4.2
krb5 1.19.2
lcms2 2.12
ld_impl_linux-64 2.38
libcurl 7.82.0
libedit 3.1.20210910
libev 4.33
libffi 3.3
libgcc-ng 12.1.0
libgfortran-ng 7.5.0
libgfortran4 7.5.0
libgomp 12.1.0
libidn2 2.3.2
libnghttp2 1.46.0
libopenblas 0.3.18
libpng 1.6.37
libsodium 1.0.18
libssh2 1.10.0
libstdcxx-ng 11.2.0
libtiff 4.2.0
libunistring 0.9.10
libuuid 1.0.3
libwebp 1.2.2
libwebp-base 1.2.2
libxcb 1.15
libxml2 2.9.14
libzlib 1.2.12
lz4-c 1.9.3
markupsafe 2.1.1
matplotlib 3.5.1
matplotlib-base 3.5.1
matplotlib-inline 0.1.2
mccabe 0.7.0
mistune 0.8.4
munkres 1.1.4
mypy_extensions 0.4.3
nbclient 0.5.13
nbconvert 6.4.4
nbformat 5.3.0
ncurses 6.3
nest-asyncio 1.5.5
notebook 6.4.11
numexpr 2.8.1
numpy 1.22.3
numpy-base 1.22.3
openpyxl 3.0.9
openssl 1.1.1p
packaging 21.3
pandas 1.4.2
pandocfilters 1.5.0
parso 0.8.3
pathspec 0.7.0
pcre 8.45
perl 5.26.2
perl-archive-tar 2.32
perl-carp 1.38
perl-common-sense 3.74
perl-compress-raw-bzip2 2.087
perl-compress-raw-zlib 2.087
perl-exporter 5.72
perl-exporter-tiny 1.002001
perl-extutils-makemaker 7.36
perl-io-compress 2.087
perl-io-zlib 1.10
perl-json 4.02
perl-json-xs 2.34
perl-list-moreutils 0.428
perl-list-moreutils-xs 0.428
perl-pathtools 3.75
perl-scalar-list-utils 1.52
perl-types-serialiser 1.0
perl-xsloader 0.24
pexpect 4.8.0
pickleshare 0.7.5
pillow 9.0.1
pip 21.2.4
prometheus_client 0.13.1
prompt-toolkit 3.0.20
prompt_toolkit 3.0.20
ptyprocess 0.7.0
pure_eval 0.2.2
pycodestyle 2.8.0
pycparser 2.21
pyflakes 2.4.0
pygments 2.11.2
pyparsing 3.0.4
pyqt 5.9.2
pyrsistent 0.18.0
python 3.9.12
python-dateutil 2.8.2
python-fastjsonschema 2.15.1
python_abi 3.9
pytz 2022.1
pyzmq 22.3.0
qt 5.9.7
qtconsole 5.3.0
qtpy 2.0.1
readline 8.1.2
regex 2022.3.15
scikit-learn 1.0.2
scipy 1.7.3
seaborn 0.11.2
send2trash 1.8.0
setuptools 61.2.0
sip 4.19.13
six 1.16.0
soupsieve 2.3.1
sqlite 3.38.3
stack_data 0.2.0
terminado 0.13.1
testpath 0.5.0
threadpoolctl 2.2.0
tk 8.6.12
toml 0.10.2
tornado 6.1
traitlets 5.1.1
typed-ast 1.4.3
typing-extensions 4.1.1
typing_extensions 4.1.1
tzdata 2022a
wcwidth 0.2.5
webencodings 0.5.1
wget 1.21.3
wheel 0.37.1
widgetsnbextension 3.5.2
xz 5.2.5
yellowbrick 1.4
zeromq 4.3.4
zipp 3.8.0
zlib 1.2.12
zstd 1.5.2