Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: cd-hit

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/cd-hit

Dependent Repos 20

adenger/subpred3
Code for the manuscript "Optimized data set and feature construction for substrate prediction of membrane transporters"
  • 4.8.1 environment.yml

Size: 50.6 MB - Last synced: 21 days ago - Pushed: 10 months ago

hivlab/virome-wrappers
snakemake wrappers
  • 4.8.1.* cdhit/environment.yaml

Size: 30.5 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

tubiomics/vulcan
  • 4.8.1.* environment.yaml

Size: 331 KB - Last synced: 11 months ago - Pushed: 11 months ago

vihoikka/spacerAQ_vh
Custom code for analyzing data in Hoikkala et al. 2021 (DOI: https://doi.org/10.1128/mBio.03338-20)
  • 4.8.1.* environment.yml

Size: 8.46 MB - Last synced: 12 months ago - Pushed: over 2 years ago

nibscbioinformatics/nanoprofiler
Profiling Nanobodies sequencing libraries
  • 4.8.1 software/nibscbioinformatics/cd-hit/environment.yml

Size: 2.43 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

wallynovak/my-first-binder
my first binder
  • >=4.8.1 environment.yml

Size: 3.93 MB - Last synced: 5 months ago - Pushed: about 1 year ago

LPCDRP/hybran
Hybrid reference-based and ab initio annotation of prokaryotic genomes https://lpcdrp.gitlab.io/hybran/
  • environment.yml

Last synced: 11 months ago

mcveanlab/Corticall
Germline DNM caller based on LdBG assembly of pathogens
  • cromwell/docker/corticall/environment.yml

Size: 128 MB - Last synced: 8 months ago - Pushed: about 4 years ago

clatworthylab/bulkBCRseq
Bulk BCR seq processing pipeline. Reimplementation of original package provided by Dr. Rachael Bashford-Rogers (Oxford)
  • environment.yml

Size: 264 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

metagentools/metagenomic-database-utilities
Scripts used to create metagenomic databases for metaproteomic analysis
  • environment.yml

Size: 19.5 KB - Last synced: 3 months ago - Pushed: 3 months ago

bacpop/BacQuerya-processing
Scripts to process publicly available information for indexing.
  • environment.yml

Size: 36.4 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago

deconvolute/subgenome
Identification of druggable genes in pathogenic bacteria – subtractive genomics approach
  • 4.8.1 environment.yml

Size: 10.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

fieldima/adequacy_of_PCMs Fork of phylo-lab-usc/fiels_workbench
This repository contains all the scripts for analyzing the adequacy of the most commonly used phylogenetic comparative models for gene expression datasets.
  • 4.8.1 Normalization_Reanalysis/environment.yml

Size: 350 MB - Last synced: 11 months ago - Pushed: over 1 year ago

cokelaer/sequana Fork of sequana/sequana
Sequana: a set of Snakemake NGS pipelines
  • environment.yml

Size: 35.5 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

ggabernet/nf-core-airrflow Fork of nf-core/airrflow
Please use the original pipeline http://github.com/nf-core/airrflow
  • 4.8.1.* environment.yml

Size: 8.26 MB - Last synced: 22 days ago - Pushed: 22 days ago

duncanberger/nxf-BATQual
Bacterial genome assembly, annotation and typing pipeline.
  • 4.8.1 environment.yaml

Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago

liaoherui/StrainAnalyze
StrainAnalyze: a user-friendly bioinformatics pipeline used to analyze given identified bacterial strains in short reads.
  • 4.8.1 environment.yaml

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

nichollskc/peptide-binding
  • 4.8.1.* environment.yml

Size: 781 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

maxlcummins/Romanian-mcr-1-Escherichia-coli
A repository detailing the whole genome sequence analysis of a collection of Escherichia coli from Romania
  • 4.6.8 ariba/environment.yaml

Size: 60.9 MB - Last synced: about 1 year ago - Pushed: about 4 years ago

kalininalab/DataSAIL
DataSAIL is a tool to split datasets while reducing information leakage.
  • environment.yml

Size: 41.3 MB - Last synced: 7 days ago - Pushed: 7 days ago

jacksonh1/slim_conservation_orthogroup_generation
  • 4.8.1 environment.yml

Size: 3.58 MB - Last synced: 28 days ago - Pushed: about 1 month ago

nf-core/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
  • 4.8.1.* modules/nf-core/cdhit/cdhit/environment.yml
  • 4.8.1.* modules/nf-core/cdhit/cdhitest/environment.yml

Size: 146 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

LPCDRP/hybran
comparative prokaryotic genome annotation
  • environment.yml

Size: 6.67 MB - Last synced: 8 days ago - Pushed: 8 days ago