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GitHub / vihoikka / spacerAQ_vh
Custom code for analyzing data in Hoikkala et al. 2021 (DOI: https://doi.org/10.1128/mBio.03338-20)
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/vihoikka%2FspacerAQ_vh
Stars: 0
Forks: 0
Open Issues: 0
License: gpl-3.0
Language: R
Repo Size: 8.46 MB
Dependencies:
10
Created: over 4 years ago
Updated: over 2 years ago
Last pushed: over 2 years ago
Last synced: about 1 year ago
Files
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Dependencies
environment.yml
conda
- biopython 1.76.*
- bowtie2 2.3.0.*
- cd-hit 4.8.1.*
- fuzzywuzzy 0.15.1.*
- ghostscript 9.53.3.*
- python 3.6.*
- samtools 1.9.*
- seqtk 1.3.*
- trimmomatic 0.36.*
- weblogo 3.7.4.*