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GitHub / tubiomics / vulcan
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/tubiomics%2Fvulcan
Stars: 0
Forks: 0
Open Issues: 0
License: None
Language: Nextflow
Repo Size: 331 KB
Dependencies:
38
Created: over 1 year ago
Updated: over 1 year ago
Last pushed: 12 months ago
Last synced: 12 months ago
Files
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Readme
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Dependencies
- actions/checkout v3 composite
- docker/build-push-action v3 composite
- docker/login-action v2 composite
- docker/setup-buildx-action v2 composite
- docker/setup-qemu-action v2 composite
environment.yaml
conda
- bbtools 37.62.*
- bwa-mem2 2.2.1.*
- cd-hit 4.8.1.*
- cd-hit-auxtools 4.8.1.*
- drep 3.4.0.*
- eggnog-mapper 2.1.9.*
- fastp 0.23.2.*
- interproscan 5.55_88.0.*
- kaiju 1.9.0.*
- krona 2.8.1.*
- libzlib 1.2.13.*
- maxbin2 2.2.7.*
- megahit 1.2.9.*
- perl 5.26.2.*
- prokka 1.14.6.*
- python 3.11.0.*
- samtools 1.16.1.*
- seqkit 2.3.1.*
- seqtk 1.3.*
Dockerfile
docker
- mambaorg/micromamba 0.27.0 build
docker/amos/Dockerfile
docker
- public.ecr.aws/ubuntu/ubuntu 20.04 build
docker/binning/Dockerfile
docker
- mambaorg/micromamba 0.27.0 build
docker/checkm/Dockerfile
docker
- python 3.11.1-slim build
- adoptopenjdk/openjdk11 jre-11.0.16.1_1-ubuntu build
- rocker/tidyverse $R_VERSION build
- ubuntu latest build
docker/metabat2/Dockerfile
docker
- mambaorg/micromamba 0.27.0 build
- mambaorg/micromamba 0.27.0 build
- mambaorg/micromamba 0.27.0 build
- mambaorg/micromamba 0.27.0 build
- mambaorg/micromamba 0.27.0 build
docker/samtools/Dockerfile
docker
- public.ecr.aws/ubuntu/ubuntu 20.04 build
- mambaorg/micromamba 0.27.0 build