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GitHub / ggabernet / nf-core-airrflow
Please use the original pipeline http://github.com/nf-core/airrflow
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ggabernet%2Fnf-core-airrflow
Fork of nf-core/airrflow
Stars: 1
Forks: 1
Open Issues: 0
License: mit
Language: Nextflow
Repo Size: 8.18 MB
Dependencies:
43
Created: over 5 years ago
Updated: 8 days ago
Last pushed: 8 days ago
Last synced: 8 days ago
Files
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Readme
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Dependencies
.github/workflows/branch.yml
actions
- actions/checkout v1 composite
.github/workflows/ci.yml
actions
- actions/checkout v1 composite
.github/workflows/linting.yml
actions
- actions/checkout v1 composite
- actions/setup-node v1 composite
- actions/setup-python v1 composite
environment.yml
conda
- airr 1.2.1.*
- biopython 1.70.*
- blast 2.7.1.*
- cairo 1.16.0.*
- cd-hit 4.8.1.*
- changeo 0.4.5.*
- fastqc 0.11.8.*
- ghostscript 9.22.*
- igblast 1.10.0.*
- matplotlib 3.0.3.*
- mscorefonts 0.0.1.*
- multiqc 1.7.*
- muscle 3.8.1551.*
- pandas 0.24.2.*
- phylip 3.697.*
- presto 0.5.10.*
- r-airr 1.2.0.*
- r-alakazam 0.2.11.*
- r-circlize 0.4.6.*
- r-data.table 1.12.2.*
- r-dplyr 0.8.3.*
- r-extrafont 0.17.*
- r-ggplot2 3.2.0.*
- r-gplots 3.0.1.1.*
- r-gtools 3.8.1.*
- r-igraph 1.2.4.1.*
- r-markdown 0.9.*
- r-optparse 1.6.2.*
- r-shazam 0.1.10.*
- r-svglite 1.2.2.*
- r-tigger 0.3.1.*
- r-upsetr 1.4.0.*
- seaborn 0.9.0.*
- tbl2asn 25.6.*
- unzip 6.0.*
- vsearch 2.11.1.*
- zip 3.0.*
Dockerfile
docker
- nfcore/base 1.7 build