Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: muscle

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/muscle

Dependent Repos 30

metashot/docker
Metashot docker images
  • dockerfiles/anvio/7-1/environment.yml

Size: 1.35 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

bassiousmaximus/bvcn-binder-lesson1
  • environment.yml

Size: 3.2 MB - Last synced: 10 months ago - Pushed: about 3 years ago

tdayris/snakemake-wrappers Fork of snakemake/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see
  • 3.8.1551 bio/muscle/environment.yaml

Size: 735 MB - Last synced: 18 days ago - Pushed: 20 days ago

CarolinaPB/polish-assembly-shortreads
Polish assembly with short reads
  • environment.yml

Size: 35.2 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

artic-network/fieldbioinformatics Fork of zibraproject/zika-pipeline
The ARTIC field bioinformatics pipeline
  • 3.8.* environment.yml

Size: 3.97 MB - Last synced: 9 months ago - Pushed: 9 months ago

WGLab/NanoCaller
Variant calling tool for long-read sequencing data
  • 3.8.* environment.yml

Size: 493 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

dmitrymyl/PROphiLE29
A tool for prediction of phi29 polymerase-like activity.
  • 3.8.1551.* environment.yml

Size: 447 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

nibscbioinformatics/viralevo
  • 3.8.1551.* containers/viralevo-genomefinish/environment.yml

Size: 308 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

NBISweden/IgDiscover-legacy 📦
Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads
  • 3.8.1551.* environment.yml

Size: 1.56 MB - Last synced: 5 months ago - Pushed: 6 months ago

MPI-SHH-SummerSchool/dag-material
  • 3.8.1551.* Hands on Introduction to Ancient Microbiome Analysis/environment.yml

Size: 489 MB - Last synced: 9 months ago - Pushed: almost 3 years ago

broadinstitute/malaria-amplicon-pipeline
  • 3.8.1551.* environment.yml

Size: 171 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

med-team/igdiscover
Debian packaging of IgDiscover (http://docs.igdiscover.se/en/stable/) - analyzes antibody repertoires to find new V genes
  • 3.8.1551.* environment.yml

Last synced: about 1 year ago

mitoNGS/MToolBox_snakemake
MToolBox pipeline written in snakemake to allow a better scalability
  • 3.8.1551.* envs/environment.yaml

Size: 2.17 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

gkhlab/igdiscover22
  • 3.8.1551.* environment.yml

Last synced: about 1 year ago

omicsclass/biodocker
docker images for bioinformatics
  • pop-evol-gwas/environment.yml

Size: 59.2 MB - Last synced: 12 months ago - Pushed: over 1 year ago

ctlab/GScour
Genome-wide detection of positive selection
  • 3.8.1551 environment.yml

Size: 1.89 MB - Last synced: 8 days ago - Pushed: 12 months ago

conda-envs/default
  • environment.yml

Last synced: about 1 year ago

elaspic/elaspic2
Faster Ensemble Learning Approach for Stability Prediction of Interface and Core mutations.
  • >=3.8.1551 .gitlab/conda-env/environment.yml

Last synced: 12 days ago

mendelics/fieldbioinformatics Fork of artic-network/fieldbioinformatics
The ARTIC field bioinformatics pipeline
  • 3.8.* environment.yml

Size: 3.98 MB - Last synced: 2 months ago - Pushed: over 1 year ago

ressy-group/paper-helpers/paper-helper-ramesh-2017
Sequences and metadata gathered from [10.3389/fimmu.2017.01407](https://doi.org/10.3389/fimmu.2017.01407) (Rhesus IG loci)
  • environment.yml

Last synced: about 1 year ago

babelomics/impuSARS
Software tool for the imputation of whole-genome SARS-CoV-2 sequences.
  • 3.8.1551.* conda/environment.yml

Size: 85.2 MB - Last synced: 10 months ago - Pushed: over 1 year ago

folkehelseinstituttet/FHI_SC2_Pipeline_Illumina
Bioinformatic pipeline for SARS-CoV-2 sequence analysis
  • 3.8.1551 CommonFiles/artic-ncov2019/environment.yml

Size: 13.3 MB - Last synced: about 1 month ago - Pushed: 2 months ago

ShawHahnLab/igseq
IgSeq utilities
  • >=5.1,<6 igseq/data/environment.yml

Size: 980 KB - Last synced: 7 days ago - Pushed: 8 days ago

fieldima/adequacy_of_PCMs Fork of phylo-lab-usc/fiels_workbench
This repository contains all the scripts for analyzing the adequacy of the most commonly used phylogenetic comparative models for gene expression datasets.
  • 5.1 Normalization_Reanalysis/environment.yml

Size: 350 MB - Last synced: 12 months ago - Pushed: over 1 year ago

lucanest/Phyloformer
Fast and accurate Phylogeny estimation with self-attention Networks
  • 3.8.31 environment.yml

Size: 7.45 MB - Last synced: 9 months ago - Pushed: 10 months ago

ggabernet/nf-core-airrflow Fork of nf-core/airrflow
Please use the original pipeline http://github.com/nf-core/airrflow
  • 3.8.1551.* environment.yml

Size: 8.18 MB - Last synced: 6 days ago - Pushed: 6 days ago

duncanberger/nxf-BATQual
Bacterial genome assembly, annotation and typing pipeline.
  • 5.1 environment.yaml

Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago

liaoherui/StrainAnalyze
StrainAnalyze: a user-friendly bioinformatics pipeline used to analyze given identified bacterial strains in short reads.
  • 5.1 environment.yaml

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

kramundson/phylogeny_basic
  • 3.8.31.* environment.yaml

Size: 10.7 KB - Last synced: 10 months ago - Pushed: almost 6 years ago

wuaipinglab/SARS-CoV-2_paraFix
SARS-CoV-2 paraFix mutations
  • environment.yml

Size: 555 KB - Last synced: 6 months ago - Pushed: over 1 year ago

rambaut/my-example
  • 3.8.1551 environment.yml

Size: 85.9 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

wuaipinglab/sitePath_assessment
Test sitePath
  • environment.yml

Size: 104 MB - Last synced: 6 months ago - Pushed: over 1 year ago

Arkadiy-Garber/bvcn-binder-hmmgenie
Learn about how to contribute your own Genie to the MagicCave toolkit
  • environment.yml

Size: 79.6 MB - Last synced: about 1 year ago - Pushed: about 4 years ago

Arkadiy-Garber/bvcn-binder-pseudofinder
  • 3.8.1551.* environment.yml

Size: 33.5 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

kathiehuang/haplotype_calling_pipeline
  • 5.1.* config/environment.yaml

Size: 2.65 GB - Last synced: about 1 year ago - Pushed: about 1 year ago

aednv/conservatory-utils
Utilities for conservatory tree generation and environment set up
  • conservatory_conda/environment.yml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

ehill-iolani/ethill-artic-ncov2019
  • 3.8.1551.* environment.yml

Size: 5.36 MB - Last synced: 10 months ago - Pushed: over 1 year ago

AAriam/biotite Fork of biotite-dev/biotite
A comprehensive library for computational molecular biology
  • 3.* environment.yml

Size: 151 MB - Last synced: 6 days ago - Pushed: about 1 year ago

Mojusko/biotite Fork of biotite-dev/biotite
A comprehensive library for computational molecular biology
  • environment.yml

Size: 174 MB - Last synced: 11 months ago - Pushed: about 2 years ago

KatSteinke/fieldbioinformatics-update-longshot Fork of artic-network/fieldbioinformatics
The ARTIC field bioinformatics pipeline
  • 3.8.* environment.yml

Size: 3.94 MB - Last synced: 11 months ago - Pushed: almost 2 years ago

trongnhanuit/Phyloformer Fork of lucanest/Phyloformer
Fast and accurate Phylogeny estimation with self-attention Networks
  • 3.8.31 environment.yml

Size: 13.7 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

MarkusHaak/fieldbioinformatics Fork of artic-network/fieldbioinformatics
The ARTIC field bioinformatics pipeline
  • 3.8.* environment.yml

Size: 339 MB - Last synced: 10 months ago - Pushed: almost 3 years ago

javaweb2019/datahub Fork of vinitra-zz/datahub
JupyterHubs for use by Berkeley enrolled students
  • 3.8.* deployments/biology/image/environment.yml

Size: 66.6 MB - Last synced: 10 months ago - Pushed: over 3 years ago

sudarshangc/biotite Fork of biotite-dev/biotite
A comprehensive library for computational molecular biology
  • environment.yaml

Size: 104 MB - Last synced: 10 months ago - Pushed: over 4 years ago

shaneknapp/datahub Fork of berkeley-dsep-infra/datahub
JupyterHubs for use by Berkeley enrolled students
  • 3.8.* deployments/biology/image/environment.yml

Size: 71.4 MB - Last synced: 4 days ago - Pushed: 4 days ago

merenlab/anvio
An analysis and visualization platform for 'omics data
  • 3.8.1551.* .conda/environment.yaml

Size: 715 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

ryanlovett/datahub Fork of berkeley-dsep-infra/datahub
JupyterHubs for use by Berkeley enrolled students
  • 3.8.* deployments/biology/image/environment.yml

Size: 71.5 MB - Last synced: 5 days ago - Pushed: 5 days ago

berkeley-dsep-infra/datahub
JupyterHubs for use by Berkeley enrolled students
  • 3.8.* deployments/biology/image/environment.yml

Size: 71.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

unicorn-23/GwasWA
  • 5.1 environment.yml

Size: 75.5 MB - Last synced: 5 months ago - Pushed: 5 months ago

haddocking/HADDOCK-antibody-antigen
Material to run the HADDOCK antibody-antigen modelling protocol
  • 3.8.1551.* environment.yaml

Size: 3.65 MB - Last synced: 5 months ago - Pushed: 5 months ago

m-crown/SPEAR
Systematic ProtEin AnnotatoR
  • 3.8.* environment.yml

Size: 9.99 MB - Last synced: 4 months ago - Pushed: 4 months ago

danielpodlesny/samestr
SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.
  • 3.8.1551.* environment.yml

Size: 239 KB - Last synced: about 1 month ago - Pushed: about 1 month ago

celinehohzm/intron_pos_conserve
tracking recent intron gains/loss
  • environment.yml

Size: 7.2 MB - Last synced: 2 months ago - Pushed: 2 months ago

nf-core/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
  • 3.8.1551.* modules/nf-core/muscle/environment.yml
  • 5.1.* modules/nf-core/muscle5/super5/environment.yml

Size: 146 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

jbloomlab/SARS2-cocktail-vax
Cocktail of SARS-CoV-2 spikes with predicted future mutation
  • 5.1.* environment.yml

Size: 31.3 KB - Last synced: 27 days ago - Pushed: 27 days ago

biotite-dev/biotite
A comprehensive library for computational molecular biology
  • 3.* environment.yml

Size: 172 MB - Last synced: 6 days ago - Pushed: 6 days ago