Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: conda: muscle
View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/muscle
Dependent Repos 30
metashot/docker
Metashot docker images- dockerfiles/anvio/7-1/environment.yml
Size: 1.35 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
bassiousmaximus/bvcn-binder-lesson1
- environment.yml
Size: 3.2 MB - Last synced: 10 months ago - Pushed: about 3 years ago
tdayris/snakemake-wrappers Fork of snakemake/snakemake-wrappers
This is the development home of the Snakemake wrapper repository, see- 3.8.1551 bio/muscle/environment.yaml
Size: 735 MB - Last synced: 18 days ago - Pushed: 20 days ago
CarolinaPB/polish-assembly-shortreads
Polish assembly with short reads- environment.yml
Size: 35.2 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
artic-network/fieldbioinformatics Fork of zibraproject/zika-pipeline
The ARTIC field bioinformatics pipeline- 3.8.* environment.yml
Size: 3.97 MB - Last synced: 9 months ago - Pushed: 9 months ago
WGLab/NanoCaller
Variant calling tool for long-read sequencing data- 3.8.* environment.yml
Size: 493 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
dmitrymyl/PROphiLE29
A tool for prediction of phi29 polymerase-like activity.- 3.8.1551.* environment.yml
Size: 447 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
nibscbioinformatics/viralevo
- 3.8.1551.* containers/viralevo-genomefinish/environment.yml
Size: 308 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
NBISweden/IgDiscover-legacy 📦
Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads- 3.8.1551.* environment.yml
Size: 1.56 MB - Last synced: 5 months ago - Pushed: 6 months ago
MPI-SHH-SummerSchool/dag-material
- 3.8.1551.* Hands on Introduction to Ancient Microbiome Analysis/environment.yml
Size: 489 MB - Last synced: 9 months ago - Pushed: almost 3 years ago
broadinstitute/malaria-amplicon-pipeline
- 3.8.1551.* environment.yml
Size: 171 KB - Last synced: about 1 year ago - Pushed: about 1 year ago
med-team/igdiscover
Debian packaging of IgDiscover (http://docs.igdiscover.se/en/stable/) - analyzes antibody repertoires to find new V genes- 3.8.1551.* environment.yml
Last synced: about 1 year ago
mitoNGS/MToolBox_snakemake
MToolBox pipeline written in snakemake to allow a better scalability- 3.8.1551.* envs/environment.yaml
Size: 2.17 MB - Last synced: about 1 year ago - Pushed: about 2 years ago
omicsclass/biodocker
docker images for bioinformatics- pop-evol-gwas/environment.yml
Size: 59.2 MB - Last synced: 12 months ago - Pushed: over 1 year ago
ctlab/GScour
Genome-wide detection of positive selection- 3.8.1551 environment.yml
Size: 1.89 MB - Last synced: 8 days ago - Pushed: 12 months ago
elaspic/elaspic2
Faster Ensemble Learning Approach for Stability Prediction of Interface and Core mutations.- >=3.8.1551 .gitlab/conda-env/environment.yml
Last synced: 12 days ago
mendelics/fieldbioinformatics Fork of artic-network/fieldbioinformatics
The ARTIC field bioinformatics pipeline- 3.8.* environment.yml
Size: 3.98 MB - Last synced: 2 months ago - Pushed: over 1 year ago
ressy-group/paper-helpers/paper-helper-ramesh-2017
Sequences and metadata gathered from [10.3389/fimmu.2017.01407](https://doi.org/10.3389/fimmu.2017.01407) (Rhesus IG loci)- environment.yml
Last synced: about 1 year ago
babelomics/impuSARS
Software tool for the imputation of whole-genome SARS-CoV-2 sequences.- 3.8.1551.* conda/environment.yml
Size: 85.2 MB - Last synced: 10 months ago - Pushed: over 1 year ago
folkehelseinstituttet/FHI_SC2_Pipeline_Illumina
Bioinformatic pipeline for SARS-CoV-2 sequence analysis- 3.8.1551 CommonFiles/artic-ncov2019/environment.yml
Size: 13.3 MB - Last synced: about 1 month ago - Pushed: 2 months ago
ShawHahnLab/igseq
IgSeq utilities- >=5.1,<6 igseq/data/environment.yml
Size: 980 KB - Last synced: 7 days ago - Pushed: 8 days ago
fieldima/adequacy_of_PCMs Fork of phylo-lab-usc/fiels_workbench
This repository contains all the scripts for analyzing the adequacy of the most commonly used phylogenetic comparative models for gene expression datasets.- 5.1 Normalization_Reanalysis/environment.yml
Size: 350 MB - Last synced: 12 months ago - Pushed: over 1 year ago
lucanest/Phyloformer
Fast and accurate Phylogeny estimation with self-attention Networks- 3.8.31 environment.yml
Size: 7.45 MB - Last synced: 9 months ago - Pushed: 10 months ago
ggabernet/nf-core-airrflow Fork of nf-core/airrflow
Please use the original pipeline http://github.com/nf-core/airrflow- 3.8.1551.* environment.yml
Size: 8.18 MB - Last synced: 6 days ago - Pushed: 6 days ago
duncanberger/nxf-BATQual
Bacterial genome assembly, annotation and typing pipeline.- 5.1 environment.yaml
Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago
liaoherui/StrainAnalyze
StrainAnalyze: a user-friendly bioinformatics pipeline used to analyze given identified bacterial strains in short reads.- 5.1 environment.yaml
Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
kramundson/phylogeny_basic
- 3.8.31.* environment.yaml
Size: 10.7 KB - Last synced: 10 months ago - Pushed: almost 6 years ago
wuaipinglab/SARS-CoV-2_paraFix
SARS-CoV-2 paraFix mutations- environment.yml
Size: 555 KB - Last synced: 6 months ago - Pushed: over 1 year ago
rambaut/my-example
- 3.8.1551 environment.yml
Size: 85.9 KB - Last synced: about 1 year ago - Pushed: over 4 years ago
wuaipinglab/sitePath_assessment
Test sitePath- environment.yml
Size: 104 MB - Last synced: 6 months ago - Pushed: over 1 year ago
Arkadiy-Garber/bvcn-binder-hmmgenie
Learn about how to contribute your own Genie to the MagicCave toolkit- environment.yml
Size: 79.6 MB - Last synced: about 1 year ago - Pushed: about 4 years ago
Arkadiy-Garber/bvcn-binder-pseudofinder
- 3.8.1551.* environment.yml
Size: 33.5 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
kathiehuang/haplotype_calling_pipeline
- 5.1.* config/environment.yaml
Size: 2.65 GB - Last synced: about 1 year ago - Pushed: about 1 year ago
aednv/conservatory-utils
Utilities for conservatory tree generation and environment set up- conservatory_conda/environment.yml
Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
ehill-iolani/ethill-artic-ncov2019
- 3.8.1551.* environment.yml
Size: 5.36 MB - Last synced: 10 months ago - Pushed: over 1 year ago
AAriam/biotite Fork of biotite-dev/biotite
A comprehensive library for computational molecular biology- 3.* environment.yml
Size: 151 MB - Last synced: 6 days ago - Pushed: about 1 year ago
Mojusko/biotite Fork of biotite-dev/biotite
A comprehensive library for computational molecular biology- environment.yml
Size: 174 MB - Last synced: 11 months ago - Pushed: about 2 years ago
KatSteinke/fieldbioinformatics-update-longshot Fork of artic-network/fieldbioinformatics
The ARTIC field bioinformatics pipeline- 3.8.* environment.yml
Size: 3.94 MB - Last synced: 11 months ago - Pushed: almost 2 years ago
trongnhanuit/Phyloformer Fork of lucanest/Phyloformer
Fast and accurate Phylogeny estimation with self-attention Networks- 3.8.31 environment.yml
Size: 13.7 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
MarkusHaak/fieldbioinformatics Fork of artic-network/fieldbioinformatics
The ARTIC field bioinformatics pipeline- 3.8.* environment.yml
Size: 339 MB - Last synced: 10 months ago - Pushed: almost 3 years ago
javaweb2019/datahub Fork of vinitra-zz/datahub
JupyterHubs for use by Berkeley enrolled students- 3.8.* deployments/biology/image/environment.yml
Size: 66.6 MB - Last synced: 10 months ago - Pushed: over 3 years ago
sudarshangc/biotite Fork of biotite-dev/biotite
A comprehensive library for computational molecular biology- environment.yaml
Size: 104 MB - Last synced: 10 months ago - Pushed: over 4 years ago
shaneknapp/datahub Fork of berkeley-dsep-infra/datahub
JupyterHubs for use by Berkeley enrolled students- 3.8.* deployments/biology/image/environment.yml
Size: 71.4 MB - Last synced: 4 days ago - Pushed: 4 days ago
merenlab/anvio
An analysis and visualization platform for 'omics data- 3.8.1551.* .conda/environment.yaml
Size: 715 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
ryanlovett/datahub Fork of berkeley-dsep-infra/datahub
JupyterHubs for use by Berkeley enrolled students- 3.8.* deployments/biology/image/environment.yml
Size: 71.5 MB - Last synced: 5 days ago - Pushed: 5 days ago
berkeley-dsep-infra/datahub
JupyterHubs for use by Berkeley enrolled students- 3.8.* deployments/biology/image/environment.yml
Size: 71.7 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
unicorn-23/GwasWA
- 5.1 environment.yml
Size: 75.5 MB - Last synced: 5 months ago - Pushed: 5 months ago
haddocking/HADDOCK-antibody-antigen
Material to run the HADDOCK antibody-antigen modelling protocol- 3.8.1551.* environment.yaml
Size: 3.65 MB - Last synced: 5 months ago - Pushed: 5 months ago
m-crown/SPEAR
Systematic ProtEin AnnotatoR- 3.8.* environment.yml
Size: 9.99 MB - Last synced: 4 months ago - Pushed: 4 months ago
danielpodlesny/samestr
SameStr identifies shared strains between pairs of metagenomic samples based on the similarity of SNV profiles.- 3.8.1551.* environment.yml
Size: 239 KB - Last synced: about 1 month ago - Pushed: about 1 month ago
celinehohzm/intron_pos_conserve
tracking recent intron gains/loss- environment.yml
Size: 7.2 MB - Last synced: 2 months ago - Pushed: 2 months ago
nf-core/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!- 3.8.1551.* modules/nf-core/muscle/environment.yml
- 5.1.* modules/nf-core/muscle5/super5/environment.yml
Size: 146 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
jbloomlab/SARS2-cocktail-vax
Cocktail of SARS-CoV-2 spikes with predicted future mutation- 5.1.* environment.yml
Size: 31.3 KB - Last synced: 27 days ago - Pushed: 27 days ago
biotite-dev/biotite
A comprehensive library for computational molecular biology- 3.* environment.yml
Size: 172 MB - Last synced: 6 days ago - Pushed: 6 days ago