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GitHub / nibscbioinformatics / viralevo
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/nibscbioinformatics%2Fviralevo
Stars: 1
Forks: 2
Open Issues: 4
License: mit
Language: Nextflow
Repo Size: 308 KB
Dependencies:
39
Created: about 4 years ago
Updated: over 3 years ago
Last pushed: over 1 year ago
Last synced: about 1 year ago
Files
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Readme
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Dependencies
- gmcloser 1.6.2.*
- mummer 3.23.*
- muscle 3.8.1551.*
- quast 5.0.2.*
- soapdenovo2-gapcloser 1.12.*
- bioconductor-biostrings 2.52.0.*
- bioconductor-genomicfeatures 1.36.0.*
- bioconductor-gviz 1.28.0.*
- bioconductor-rtracklayer 1.44.2.*
- bioconductor-variantannotation 1.30.0.*
- pandoc 2.9.2.1.*
- r 3.6.0.*
- r-ape 5.4.*
- r-knitr 1.22.*
- r-rmarkdown 1.12.*
- r-tidyverse 1.2.1.*
environment.yml
conda
- bandage 0.8.1.*
- bowtie 1.2.3.*
- bwa 0.7.17.*
- cutadapt 2.9.*
- fastqc 0.11.8.*
- ivar 1.2.2.*
- libgenome 1.3.1
- lofreq 2.1.3.1.*
- markdown 3.1.1.*
- mauve 2.4.0.snapshot_2015_02_13.*
- multiqc 1.7.*
- pandoc 2.9.2.1.*
- pygments 2.5.2.*
- pymdown-extensions 6.0.*
- python 3.6.10.*
- r 3.6.0.*
- r-knitr 1.22.*
- r-pander 0.6.3.*
- r-rmarkdown 1.12.*
- r-tidyverse 1.2.1.*
- snpeff 4.5covid19.*
- spades 3.14.0.*
- t_coffee 11.0.8.*