Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: conda: mummer
View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/mummer
Dependent Repos 16
rchapman2000/de-novo-assembly-pipeline
- 3.23 environment.yml
Size: 60.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
nibscbioinformatics/viralevo
- 3.23.* containers/viralevo-genomefinish/environment.yml
Size: 308 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
med-team/scnapbar
single-cell sequencing with the Nanopore- 4.0.0beta2.* environment.yaml
Last synced: over 1 year ago
fmalmeida/MpGAP
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads- environment.yml
Size: 83.4 MB - Last synced: 3 months ago - Pushed: 3 months ago
liaoherui/StrainScan
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers- 3.23 environment.yaml
Size: 56.7 MB - Last synced: 18 days ago - Pushed: about 2 months ago
LPCDRP/hybran
Hybrid reference-based and ab initio annotation of prokaryotic genomes https://lpcdrp.gitlab.io/hybran/- environment.yml
Last synced: 11 months ago
vappiah/bacterial-genomics-tutorial
- environment.yaml
Size: 6.93 MB - Last synced: 10 months ago - Pushed: 10 months ago
scilifelab-lts/m_dopson_1701
- 3.23.* envs/environment.yaml
Size: 46.2 MB - Last synced: over 1 year ago
gwcbi/haphpipe
NGS viral assembly and population genetics- 3.23 environment.yml
Size: 2.35 MB - Last synced: 7 months ago - Pushed: about 3 years ago
nf-core/vipr 📦
Assembly and intrahost / low-frequency variant calling for viral samples- 3.23.* environment.yml
Size: 217 KB - Last synced: 4 months ago - Pushed: over 4 years ago
duncanberger/nxf-BATQual
Bacterial genome assembly, annotation and typing pipeline.- 3.23 environment.yaml
Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago
USDA-ARS-GBRU/keio
- 3.23 environment.yml
Size: 1.91 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
simonorozcoarias/G-SAIP
Graphical sequence alignment though High Performance Computing in the post-genomic era- 3.23 TestRepo/QualityTest/ArabidopsisRun/environment.yml
Size: 11.8 MB - Last synced: about 1 month ago - Pushed: over 1 year ago
AbeelLab/long-read-assembly-benchmark
- 3.23 environment.yml
Size: 7.68 MB - Last synced: about 1 month ago - Pushed: over 1 year ago
maxlcummins/Romanian-mcr-1-Escherichia-coli
A repository detailing the whole genome sequence analysis of a collection of Escherichia coli from Romania- 3.23 ariba/environment.yaml
Size: 60.9 MB - Last synced: about 1 year ago - Pushed: about 4 years ago
appliedbinf/pima-docker2
Volume based Pima Docker- 3.23 Internal/environment.yml
Size: 10.7 MB - Last synced: 6 months ago - Pushed: 6 months ago
ZarnackGroup/Calcifer
- 3.23 environment.yml
Size: 896 KB - Last synced: about 1 month ago - Pushed: 6 months ago
nf-core/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!- 3.23.* modules/nf-core/mummer/environment.yml
- 3.23.* modules/nf-core/nucmer/environment.yml
Size: 146 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
LPCDRP/hybran
comparative prokaryotic genome annotation- environment.yml
Size: 6.67 MB - Last synced: 20 days ago - Pushed: 20 days ago
bahlolab/TBtypeR
Mycobacterium tuberculosis mixture detection and strain typing from WGS data- TBtypeNF/workflows/benchmarking/QuantTB/environment.yml
Size: 342 KB - Last synced: 7 days ago - Pushed: 7 days ago