Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: mummer

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/mummer

Dependent Repos 16

rchapman2000/de-novo-assembly-pipeline
  • 3.23 environment.yml

Size: 60.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

nibscbioinformatics/viralevo
  • 3.23.* containers/viralevo-genomefinish/environment.yml

Size: 308 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

ModernisingMedicalMicrobiology/assembly_comparison
  • environment.yml

Last synced: over 1 year ago

med-team/scnapbar
single-cell sequencing with the Nanopore
  • 4.0.0beta2.* environment.yaml

Last synced: over 1 year ago

fmalmeida/MpGAP
Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
  • environment.yml

Size: 83.4 MB - Last synced: 3 months ago - Pushed: 3 months ago

liaoherui/StrainScan
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
  • 3.23 environment.yaml

Size: 56.7 MB - Last synced: 18 days ago - Pushed: about 2 months ago

LPCDRP/hybran
Hybrid reference-based and ab initio annotation of prokaryotic genomes https://lpcdrp.gitlab.io/hybran/
  • environment.yml

Last synced: 11 months ago

vappiah/bacterial-genomics-tutorial
  • environment.yaml

Size: 6.93 MB - Last synced: 10 months ago - Pushed: 10 months ago

scilifelab-lts/m_dopson_1701
  • 3.23.* envs/environment.yaml

Size: 46.2 MB - Last synced: over 1 year ago

gwcbi/haphpipe
NGS viral assembly and population genetics
  • 3.23 environment.yml

Size: 2.35 MB - Last synced: 7 months ago - Pushed: about 3 years ago

scilifelab-lts/nbis-mags
  • envs/environment.yaml

Size: 795 KB - Last synced: over 1 year ago

nf-core/vipr 📦
Assembly and intrahost / low-frequency variant calling for viral samples
  • 3.23.* environment.yml

Size: 217 KB - Last synced: 4 months ago - Pushed: over 4 years ago

duncanberger/nxf-BATQual
Bacterial genome assembly, annotation and typing pipeline.
  • 3.23 environment.yaml

Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago

USDA-ARS-GBRU/keio
  • 3.23 environment.yml

Size: 1.91 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

simonorozcoarias/G-SAIP
Graphical sequence alignment though High Performance Computing in the post-genomic era
  • 3.23 TestRepo/QualityTest/ArabidopsisRun/environment.yml

Size: 11.8 MB - Last synced: about 1 month ago - Pushed: over 1 year ago

AbeelLab/long-read-assembly-benchmark
  • 3.23 environment.yml

Size: 7.68 MB - Last synced: about 1 month ago - Pushed: over 1 year ago

maxlcummins/Romanian-mcr-1-Escherichia-coli
A repository detailing the whole genome sequence analysis of a collection of Escherichia coli from Romania
  • 3.23 ariba/environment.yaml

Size: 60.9 MB - Last synced: about 1 year ago - Pushed: about 4 years ago

appliedbinf/pima-docker2
Volume based Pima Docker
  • 3.23 Internal/environment.yml

Size: 10.7 MB - Last synced: 6 months ago - Pushed: 6 months ago

ZarnackGroup/Calcifer
  • 3.23 environment.yml

Size: 896 KB - Last synced: about 1 month ago - Pushed: 6 months ago

nf-core/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
  • 3.23.* modules/nf-core/mummer/environment.yml
  • 3.23.* modules/nf-core/nucmer/environment.yml

Size: 146 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

LPCDRP/hybran
comparative prokaryotic genome annotation
  • environment.yml

Size: 6.67 MB - Last synced: 20 days ago - Pushed: 20 days ago

bahlolab/TBtypeR
Mycobacterium tuberculosis mixture detection and strain typing from WGS data
  • TBtypeNF/workflows/benchmarking/QuantTB/environment.yml

Size: 342 KB - Last synced: 7 days ago - Pushed: 7 days ago