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GitHub / appliedbinf / pima-docker2
Volume based Pima Docker
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/appliedbinf%2Fpima-docker2
Stars: 0
Forks: 0
Open Issues: 0
License: None
Language: Python
Repo Size: 10.7 MB
Dependencies:
329
Created: almost 2 years ago
Updated: almost 2 years ago
Last pushed: 6 months ago
Last synced: 6 months ago
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Dependencies
Internal/environment.yml
conda
- _libgcc_mutex 0.1
- _openmp_mutex 4.5
- _r-mutex 1.0.1
- _tflow_select 2.3.0
- absl-py 1.0.0
- aiohttp 3.8.1
- aiosignal 1.2.0
- alsa-lib 1.1.5
- astor 0.8.1
- astunparse 1.6.3
- async-timeout 4.0.1
- attrs 21.2.0
- bcftools 1.12
- bedtools 2.30.0
- binutils_impl_linux-64 2.36.1
- binutils_linux-64 2.36
- biopython 1.79
- blast 2.12.0
- blinker 1.4
- brotli-bin 1.0.9
- brotlipy 0.7.0
- bwa 0.7.17
- bwidget 1.9.14
- bzip2 1.0.8
- c-ares 1.18.1
- ca-certificates 2022.6.15
- cachetools 4.2.4
- cairo 1.16.0
- certifi 2022.6.15
- cffi 1.15.0
- charset-normalizer 2.0.8
- circos 0.69.8
- click 8.0.3
- colorama 0.4.4
- conda 4.11.0
- conda-package-handling 1.7.3
- cryptography 36.0.0
- curl 7.83.1
- cycler 0.11.0
- dataclasses 0.8
- dill 0.3.4
- entrez-direct 16.2
- expat 2.4.1
- flye 2.9
- font-ttf-dejavu-sans-mono 2.37
- font-ttf-inconsolata 3.000
- font-ttf-source-code-pro 2.038
- font-ttf-ubuntu 0.83
- fontconfig 2.13.1
- fonts-conda-ecosystem 1
- fonts-conda-forge 1
- fonttools 4.28.3
- freetype 2.10.4
- fribidi 1.0.10
- frozenlist 1.2.0
- gast 0.3.3
- gcc_impl_linux-64 9.4.0
- gcc_linux-64 9.4.0
- gettext 0.19.8.1
- gfortran_impl_linux-64 9.4.0
- gfortran_linux-64 9.4.0
- giflib 5.2.1
- glimmerhmm 3.0.4
- google-auth 2.3.3
- google-auth-oauthlib 0.4.6
- google-pasta 0.2.0
- graphite2 1.3.13
- grpcio 1.42.0
- gsl 2.6
- gxx_impl_linux-64 9.4.0
- gxx_linux-64 9.4.0
- h5py 2.10.0
- harfbuzz 3.1.1
- hdf5 1.10.6
- htslib 1.12
- icu 68.2
- idna 3.1
- importlib-metadata 4.8.2
- intervaltree 3.0.2
- isa-l 2.30.0
- jbig 2.1
- joblib 1.1.0
- jpeg 9d
- k8 0.2.5
- keras-preprocessing 1.1.2
- kernel-headers_linux-64 2.6.32
- keyutils 1.6.1
- kiwisolver 1.3.2
- kraken2 2.1.2
- krb5 1.19.3
- lcms2 2.12
- ld_impl_linux-64 2.36.1
- lerc 2.2.1
- libarchive 3.5.2
- libblas 3.9.0
- libbrotlicommon 1.0.9
- libbrotlidec 1.0.9
- libbrotlienc 1.0.9
- libcblas 3.9.0
- libcurl 7.83.1
- libdeflate 1.7
- libedit 3.1.20191231
- libev 4.33
- libffi 3.4.2
- libgcc-devel_linux-64 9.4.0
- libgcc-ng 12.1.0
- libgd 2.3.3
- libgfortran-ng 11.2.0
- libgfortran5 11.2.0
- libglib 2.70.1
- libgomp 12.1.0
- libiconv 1.16
- libidn2 2.3.2
- liblapack 3.9.0
- libmamba 0.19.0
- libmambapy 0.19.0
- libnghttp2 1.47.0
- libnsl 2.0.0
- libopenblas 0.3.18
- libpng 1.6.37
- libprotobuf 3.19.1
- libsanitizer 9.4.0
- libsolv 0.7.19
- libssh2 1.10.0
- libstdcxx-devel_linux-64 9.4.0
- libstdcxx-ng 12.1.0
- libtiff 4.3.0
- libunistring 0.9.10
- libuuid 2.32.1
- libwebp 1.2.1
- libwebp-base 1.2.1
- libxcb 1.13
- libxml2 2.9.12
- libzlib 1.2.12
- lz4-c 1.9.3
- lzo 2.10
- make 4.3
- mamba 0.19.0
- mappy 2.23
- markdown 3.3.6
- matplotlib-base 3.5.0
- medaka 1.4.3
- minimap2 2.23
- multidict 5.2.0
- multiprocess 0.70.12.2
- mummer 3.23
- munkres 1.1.4
- ncurses 6.2
- networkx 2.6.3
- numpy 1.19.5
- oauthlib 3.1.1
- olefile 0.46
- ont-fast5-api 4.0.0
- openjdk 11.0.1
- openjpeg 2.4.0
- openssl 1.1.1p
- opt_einsum 3.3.0
- ordered-set 4.0.2
- packaging 21.3
- pandas 1.3.4
- pandoc 2.18
- pango 1.48.10
- parasail-python 1.2.4
- pathos 0.2.8
- pbzip2 1.1.13
- pcre 8.45
- pcre2 10.37
- perl 5.32.1
- perl-archive-tar 2.40
- perl-autoloader 5.74
- perl-carp 1.50
- perl-clone 0.42
- perl-common-sense 3.75
- perl-compress-raw-bzip2 2.103
- perl-compress-raw-zlib 2.105
- perl-config-general 2.65
- perl-digest-perl-md5 1.9
- perl-dynaloader 1.25
- perl-encode 3.18
- perl-exporter 5.74
- perl-exporter-tiny 1.002002
- perl-extutils-makemaker 7.64
- perl-font-ttf 1.06
- perl-gd 2.76
- perl-io-compress 2.106
- perl-io-string 1.08
- perl-io-zlib 1.11
- perl-json 4.07
- perl-json-xs 2.34
- perl-list-moreutils 0.430
- perl-list-moreutils-xs 0.430
- perl-math-bezier 0.01
- perl-math-round 0.07
- perl-math-vecstat 0.08
- perl-module-implementation 0.09
- perl-module-runtime 0.016
- perl-number-format 1.75
- perl-params-validate 1.30
- perl-parent 0.238
- perl-pathtools 3.75
- perl-readonly 2.05
- perl-regexp-common 2017060201
- perl-scalar-list-utils 1.62
- perl-set-intspan 1.19
- perl-statistics-basic 1.6611
- perl-svg 2.87
- perl-text-format 0.62
- perl-time-hires 1.9764
- perl-try-tiny 0.31
- perl-types-serialiser 1.01
- perl-xml-parser 2.44_01
- perl-xsloader 0.24
- pigz 2.6
- pillow 8.4.0
- pip 21.3.1
- pixman 0.40.0
- popt 1.16
- pox 0.3.0
- ppft 1.6.6.4
- progressbar33 2.4
- protobuf 3.19.1
- pthread-stubs 0.4
- pyasn1 0.4.8
- pyasn1-modules 0.2.7
- pybind11-abi 4
- pycosat 0.6.3
- pycparser 2.21
- pyfaidx 0.6.3.1
- pyjwt 2.0.1
- pylatex 1.4.1
- pyopenssl 21.0.0
- pyparsing 3.0.6
- pysam 0.17.0
- pysocks 1.7.1
- pyspoa 0.0.3
- python 3.8.12
- python-dateutil 2.8.2
- python-edlib 1.3.9
- python-isal 0.11.1
- python_abi 3.8
- pytz 2021.3
- pyu2f 0.1.5
- pyyaml 6.0
- qcat 1.1.0
- r 4.1
- r-base 4.1.1
- r-boot 1.3_28
- r-class 7.3_19
- r-cluster 2.1.2
- r-codetools 0.2_18
- r-foreign 0.8_81
- r-kernsmooth 2.23_20
- r-lattice 0.20_45
- r-mass 7.3_54
- r-matrix 1.3_4
- r-mgcv 1.8_38
- r-nlme 3.1_153
- r-nnet 7.3_16
- r-recommended 4.1
- r-rpart 4.1_15
- r-spatial 7.3_14
- r-survival 3.2_13
- racon 1.4.20
- readline 8.1
- reproc 14.2.3
- reproc-cpp 14.2.3
- requests 2.26.0
- requests-oauthlib 1.3.0
- rsa 4.8
- rsync 3.2.3
- ruamel_yaml 0.15.80
- samtools 1.12
- scipy 1.7.3
- sed 4.8
- setuptools 59.4.0
- simplejson 3.17.6
- six 1.16.0
- sortedcontainers 2.4.0
- sqlite 3.37.0
- sysroot_linux-64 2.12
- tar 1.34
- tensorboard 2.7.0
- tensorboard-data-server 0.6.0
- tensorboard-plugin-wit 1.8.0
- tensorflow 2.2.0
- tensorflow-base 2.2.0
- tensorflow-estimator 2.6.0
- termcolor 1.1.0
- tk 8.6.11
- tktable 2.10
- tqdm 4.62.3
- typing-extensions 4.0.1
- typing_extensions 4.0.1
- unicodedata2 13.0.0.post2
- urllib3 1.26.7
- varscan 2.4.4
- werkzeug 2.0.1
- wget 1.20.3
- whatshap 1.0
- wheel 0.37.0
- wkhtmltopdf 0.12.4
- wrapt 1.13.3
- xopen 1.2.1
- xorg-fixesproto 5.0
- xorg-inputproto 2.3.2
- xorg-kbproto 1.0.7
- xorg-libice 1.0.10
- xorg-libsm 1.2.3
- xorg-libx11 1.7.2
- xorg-libxau 1.0.9
- xorg-libxdmcp 1.1.3
- xorg-libxext 1.3.4
- xorg-libxfixes 5.0.3
- xorg-libxi 1.7.10
- xorg-libxrender 0.9.10
- xorg-libxt 1.2.1
- xorg-libxtst 1.2.3
- xorg-recordproto 1.14.2
- xorg-renderproto 0.11.1
- xorg-xextproto 7.3.0
- xorg-xproto 7.0.31
- xxhash 0.8.0
- xz 5.2.5
- yaml 0.2.5
- yaml-cpp 0.6.3
- yarl 1.7.2
- zipp 3.6.0
- zlib 1.2.12
- zstd 1.5.0