xorg-libxtst | conda | Package Usage

ifremer-bioinformatics/samba

Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

1.2.3 containers/qiime2-2019.10/environment.yml

Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago

btmartin721/ClineHelpR

Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables

1.2.3 environment.yml

Size: 93.4 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

EpiDiverse/wgbs

The EpiDiverse Whole Genome Bisulfite Sequencing Pipeline, implemented with Nextflow

1.2.3.* env/environment.yml

Size: 31.4 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

villegar/DoGE

Differential Gene Expression Analysis Pipeline

1.2.3.* environment.yml

Size: 16 MB - Last synced: 10 months ago - Pushed: almost 3 years ago

OSU-BMBL/PGRP-Grape-Grafting

Adapting Perennial Crops for Climate Change: Graft Transmissible Effects of Rootstocks on Grapevine Shoots

1.2.3 environment.yml

Size: 2.22 MB - Last synced: 9 days ago - Pushed: about 3 years ago

lfnothias/qiime2

1.2.3.* environment.yml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

CarolinaPB/polish-assembly-shortreads

Polish assembly with short reads

1.2.3 environment.yml

Size: 35.2 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

timplab/ncov

ncov work

1.2.3.* environment.yml

Size: 4.17 MB - Last synced: 2 months ago - Pushed: over 3 years ago

broadinstitute/malaria-amplicon-pipeline

1.2.3.* environment.yml

Size: 171 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

evoosa/16S_bacteria_detector

Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms

1.2.3 src/environment.yml

Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

phylo42/PEWO

Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees

1.2.3 envs/environment.yaml

Size: 7.82 MB - Last synced: 3 months ago - Pushed: 8 months ago

jgil-sevenbridges/validate_fastqc_multiqc_nf2

1.2.3.* environment.yml

Size: 139 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

sadamov/pollenmaps

Creating some nice maps in R

1.2.3 environment.yml

Size: 79.6 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

Bernt/MITOS

MITOS

1.2.3.* environment.yaml

Last synced: 15 days ago

bionetslab/digest

1.2.3 environment.yml

Size: 4.35 MB - Last synced: 8 days ago - Pushed: 10 months ago

omicsclass/biodocker

docker images for bioinformatics

1.2.3.* ampliseq-q2/environment.yml

Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago

russHyde/code_as_data

Analysis of code in R dev packages (for a planned talk)

1.2.3.* conda/environment.yml

Size: 295 KB - Last synced: 3 months ago - Pushed: 7 months ago

jiangweiyao/RefNAAP

Reference based Nanopore assembly analysis pipeline

1.2.3.* environment.yml

Size: 76.4 MB - Last synced: 29 days ago - Pushed: about 3 years ago

steamboat/titan-nf

A Nextflow wrapper around Titan-GC. Documentation available at https://steamboat.gitlab.io/titan-nf/

1.2.3.* environment.yml

Last synced: over 1 year ago

mr-eyes/denovo-rnaseq

De novo assembly, Differential gene expression, and annotation workflow

1.2.3 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

ATpoint/atac_chip_preprocess

Preprocessing workflow for ATAC-seq and ChIP-seq data

1.2.3.* environment.yml

Size: 613 KB - Last synced: 10 months ago - Pushed: 10 months ago

NatPombubpa/Qiime2_2022.8_binder

Qiime2_2022.8_binder test

1.2.3.* environment.yml

Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago

mapcover-ie/mapcover-ie

1.2.3 environment.yaml

Last synced: over 1 year ago

aryazand/CMV_Promoters_by_host_cell_type

Analyze differential activity of promoters in the cytomegalovirus (CMV) genome during infection of different cell types

1.2.3 env/environment.yml

Size: 55.7 KB - Last synced: 12 months ago - Pushed: about 1 year ago

geneflow/conda/nanopore-amplicon-dereplication

Conda environment for Nanopore Amplicon Dereplication workflow

1.2.3 environment.yml

Last synced: over 1 year ago

geneflow/conda/nanopore_amplicon_dereplicate

1.2.3 environment.yml

Last synced: over 1 year ago

ChrisJar/dask-sql Fork of dask-contrib/dask-sql

Distributed SQL Engine in Python using Dask

1.2.3 docs/environment.yaml

Size: 3.21 MB - Last synced: 11 months ago - Pushed: 11 months ago

gagneurlab/transmicron

1.2.3.* environment.yml

Size: 16.7 MB - Last synced: 5 days ago - Pushed: over 1 year ago

samwitham/PromoterArchitecture

Arabidopsis thaliana promoter architecture analysis pipeline

1.2.3 environment.yml

Size: 187 MB - Last synced: 7 months ago - Pushed: 9 months ago

christophfink/r5py Fork of r5py/r5py

A Python wrapper for the R5 routing analysis engine (https://github.com/conveyal/r5). Inspired by r5r, a wrapper for R (https://ipeagit.github.io/r5r/)

1.2.3.* .binder/environment.yml

Size: 39.5 MB - Last synced: 29 days ago - Pushed: 3 months ago

duncanberger/nxf-BATQual

Bacterial genome assembly, annotation and typing pipeline.

1.2.3 environment.yaml

Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago

magdalenarussell/mechanistic-trimming

Collaboration to identify sequence-level determinants of nucleotide trimming during V(D)J recombination

1.2.3 environment.yml

Size: 185 MB - Last synced: 20 days ago - Pushed: 20 days ago

liaoherui/StrainAnalyze

StrainAnalyze: a user-friendly bioinformatics pipeline used to analyze given identified bacterial strains in short reads.

1.2.3 environment.yaml

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

mestill7/HIV_Chimfinder

1.2.3 environment.yaml

Size: 76.2 KB - Last synced: about 2 months ago - Pushed: over 3 years ago

mestill7/Snake-RNA

Pipeline for summarizing expression data for batches of public RNA-seq datasets

1.2.3 environment.yaml

Size: 128 KB - Last synced: about 2 months ago - Pushed: over 3 years ago

rchapman2000/ont-ref-based-assembly

A reference-based assembly pipeline designed for analysis of Oxford Nanopore sequencing data

1.2.3.* environment.yml

Size: 47.9 KB - Last synced: 12 months ago - Pushed: 12 months ago

rchapman2000/ont-de-novo-assembly

A de novo assembly pipeline for sequencing data using Oxford Nanopore Technologies

1.2.3.* environment.yml

Size: 10.7 KB - Last synced: 12 months ago - Pushed: 12 months ago

AbeelLab/long-read-assembly-benchmark

1.2.3 environment.yml

Size: 7.68 MB - Last synced: 29 days ago - Pushed: over 1 year ago

mwang87/GNPS_Volatility_Notebooks

1.2.3.* environment.yml

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

jhgille2/rna_seq_pipeline_template

WIP reproducible pipeline for rna seq differential expression analysis

1.2.3 environment.yml

Size: 77.1 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

alexander-matsievsky/flink-training

1.2.3 environment.yml

Size: 27.3 KB - Last synced: about 1 year ago - Pushed: about 2 years ago

timplab/jhu-covid-pipeline

Viral Genomics Pipeline in use at JHU

1.2.3.* environment.yml

Size: 27.3 MB - Last synced: 2 months ago - Pushed: about 3 years ago

nlm-irp-jianglab/bioinfo-wwbe

💧 Bioinformatic pipeline for wastewater-based epidemiology project

1.2.3 environment.yml

Size: 620 KB - Last synced: 7 months ago - Pushed: 12 months ago

Jacobog02/Maslenlab_Thesis

Thesis code repository for analysis of Illumina Bisulfite Sequencing data.

1.2.3.* env/environment.yml

Size: 2.25 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

jiangweiyao/github_action_docker_integration

Repo for testing advanced github action integration with Docker

1.2.3.* Docker/environment.yml

Size: 11.7 KB - Last synced: 28 days ago - Pushed: 12 months ago

davidecarlson/SARS-CoV2-variant-calling-example

An educational variant calling example with short read Illumina data using the SARS-CoV2 genome

1.2.3 environment.yaml

Size: 527 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

battyone/dask-sql Fork of dask-contrib/dask-sql

SQL Engine for Dask

1.2.3 docs/environment.yaml

Size: 683 KB - Last synced: about 1 month ago - Pushed: over 3 years ago

sfragkoul/synth4bench

A framework for generating synthetic genomics data for the evaluation of tumor-only somatic variant calling algorithms for the needs of my Doctoral Thesis.