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GitHub / timplab / ncov
ncov work
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/timplab%2Fncov
Stars: 2
Forks: 0
Open Issues: 0
License: None
Language: Shell
Repo Size: 4.17 MB
Dependencies:
40
Created: about 4 years ago
Updated: 3 months ago
Last pushed: over 3 years ago
Last synced: 3 months ago
Files
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Dependencies
environment.yml
conda
- bioconductor-gviz
- bioconductor-rtracklayer
- bioconductor-trackviewer
- biopython 1.74.*
- hdf5
- imagemagick
- mafft
- nano
- numpy
- pandas
- pip
- pysam 0.15.3.*
- python 3.*
- pyvcf 0.6.8
- r-broom
- r-devtools
- r-essentials 3.6.0.*
- r-ggextra
- r-ggplot2
- r-gridextra
- r-jsonlite
- r-kableextra
- r-knitr
- r-magick
- r-pander
- r-pheatmap
- r-png
- r-rcolorbrewer
- r-rjson
- r-tidyverse
- r-vcfr
- r-viridis
- requests 2.23.0.*
- samtools 1.9.*
- seqtk 1.3.*
- snp-sites 2.5.1.*
- snpeff 4.3.1t.*
- xorg-libxi
- xorg-libxrender
- xorg-libxtst 1.2.3.*