Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: r-nlme


21 versions
Latest release: over 1 year ago
65 dependent packages

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/r-nlme

Dependent Repos 86

rjof/coronavirus_dashboard_mexico
Fork of https://github.com/RamiKrispin/coronavirus_dashboard with minimal tweaks for Mexico
  • 3.1_139 environment.yml

Size: 12.8 MB - Last synced: 5 months ago - Pushed: over 1 year ago

rjof/rjof.github.io
Personal projects
  • 3.1_139 docs/environment.yml
  • 3.1_139 environment.yml

Size: 38.5 MB - Last synced: 5 months ago - Pushed: over 1 year ago

ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
  • 3.1_141 containers/qiime2-2019.10/environment.yml
  • 3.1_143 containers/r-3.6.1/environment.yml

Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago

FORCOLAB-UofT/INFOX
This is a prototype for overview of GitHub forks.
  • 3.1_131 environment.yaml

Size: 14.3 MB - Last synced: about 2 months ago - Pushed: 3 months ago

nixiwang/PISAnalysisTool
An analysis tool of multi-level modeling for PISA dataset
  • 3.1_137 environment.yml

Size: 44.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

brucemoran/tumour_only
Tumour-only DNA sequencing analysis
  • 3.1_150 environment.yaml

Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

btmartin721/ClineHelpR
Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables
  • 3.1_152 environment.yml

Size: 93.4 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

afuentri/B-MyRepCLL
pipeline for a consensus-oriented analysis of B-cell clones
  • 3.1_139 environment.yml

Size: 291 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

casrssk/WGS-analysis-in-C_trachomatis
  • 3.1_144 linux/sample/envs/environment.yml

Size: 7.39 MB - Last synced: 4 months ago - Pushed: about 2 years ago

jseeman/publication-supplements
Code and data for research replication and reuse
  • 3.1_139 2022_arsia/environment.yaml

Size: 511 KB - Last synced: about 1 year ago - Pushed: about 2 years ago

villegar/DoGE
Differential Gene Expression Analysis Pipeline
  • 3.1_139.* environment.yml

Size: 16 MB - Last synced: 9 months ago - Pushed: almost 3 years ago

russHyde/russ-hyde
Public content for my blog
  • 3.1_140.* envs/environment.yaml

Size: 5.17 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

luisacusick/VC-Optimus
Bioinformatics pipeline to take short reads, align them to a reference, and call SNPs.
  • 3.1_139 environment.yml

Size: 138 KB - Last synced: about 1 year ago - Pushed: about 3 years ago

lfnothias/qiime2
  • 3.1_150.* environment.yml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

YeoLab/MINES
(m)6A (I)dentification Using (N)anopor(E) (S)equencing
  • 3.1_139 environment.yml

Size: 8.46 MB - Last synced: about 20 hours ago - Pushed: over 3 years ago

InfantLab/little-drummers
  • 3.1_139 analysis/environment.yml

Size: 1.04 GB - Last synced: about 1 year ago - Pushed: almost 2 years ago

mskcc/ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI
  • 3.1_137.* environment.yaml

Size: 276 MB - Last synced: 2 days ago - Pushed: over 1 year ago

krinsman/dissertation
Source code and Jupyter notebooks related to PhD dissertation.
  • 3.1_152 environment.yml

Last synced: over 1 year ago

vaqm2/custom_gwas
Python Code using CyVCF2 to run custom GWAS models on imputed VCF files
  • 3.1_158.* environment.yml

Size: 958 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

BioinfoNet/TeachingJupyterNotebooks
Training materials for the Open Science Workshop held in Nariobi
  • 3.1_131 environment.yml

Size: 16 MB - Last synced: about 1 year ago - Pushed: over 5 years ago

broadinstitute/malaria-amplicon-pipeline
  • 3.1_150.* environment.yml

Size: 171 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

moj-analytical-services/DefCalc
The deflator calculator.
  • 3.1_147 environment.yml

Size: 4.83 MB - Last synced: 10 months ago - Pushed: 10 months ago

evoosa/16S_bacteria_detector
Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms
  • 3.1_147 src/environment.yml

Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

Wiselab2/NGPINT
  • 3.1_122 environment.yml

Size: 300 MB - Last synced: 7 months ago - Pushed: over 2 years ago

edotau/fishingcluster
  • 3.1_150 workflows/atacseq/environment.yml

Size: 3.74 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

davidecolla/semantic_coherence_markers
  • 3.1_139 environment.yml

Size: 390 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

kutaslab/fitgrid
Multichannel event-related time-series regression modeling for EEG, MEG, and sensor array data
  • 3.1_152 binder/environment.yml

Size: 124 MB - Last synced: 25 days ago - Pushed: over 1 year ago

phylo42/PEWO
Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees
  • 3.1_144 envs/environment.yaml

Size: 7.82 MB - Last synced: 3 months ago - Pushed: 8 months ago

web-mev/mev-normalize
  • 3.1_150 docker/environment.yml

Size: 16.6 KB - Last synced: 19 days ago - Pushed: 3 months ago

liaoherui/StrainScan
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers
  • 3.1_150 environment.yaml

Size: 56.7 MB - Last synced: 6 days ago - Pushed: about 1 month ago

nlm-irp-jianglab/Evolink
:palm_tree: A Phylogenetic Approach for Rapid Identification of Genotype-Phenotype Associations in Large-scale Microbial Multi-species Data
  • 3.1_158 environment.yml

Size: 251 MB - Last synced: 9 months ago - Pushed: 9 months ago

GWeindel/lecture_R
A really short introduction (4 hours lecture) for psychology doctoral students at Aix Marseille University.
  • 3.1_152 environment.yml

Size: 4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

ColtonGarelli/notebooks2020
  • 3.1_148.* environment.yml

Size: 20.5 KB - Last synced: about 2 months ago - Pushed: almost 4 years ago

dahjan/DMS_opt
  • 3.1_139 environment.yml

Size: 7.82 MB - Last synced: 7 months ago - Pushed: over 3 years ago

happykhan/journal
Citation lists
  • 3.1_157 environment.yml

Size: 28 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

ajayago/NCMF_bioinformatics
  • 3.1_139 CMF/environment.yml

Size: 202 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

quadram-institute-bioscience/dadaist2
Dadaist2 🟹 Highway to R
  • 3.1_152 lab/class/environment.yml

Size: 39.4 MB - Last synced: 3 months ago - Pushed: 3 months ago

kelly-sovacool/meta-repo
A meta-repository to organize my public projects.
  • 3.1_141 config/environment.yml

Size: 33.2 MB - Last synced: 9 months ago - Pushed: 9 months ago

jamesfitton/cxr
Intertidal water occurrence generator from Sentinel 2 satellite data and Google Earth Engine
  • 3.1_159 environment.yml

Size: 1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

yangmqglobe/dapipe
è‡Ș抹挖的 ATAC-Seq ćˆ†æžæ”çš‹
  • 3.1_152.* environment.yml

Size: 193 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

aw236/boilerplate_code
best functions
  • 3.1_139.* environment.yml

Size: 380 KB - Last synced: 27 days ago - Pushed: 12 months ago

chejuic/medcalc_R
medcalc using Shiny
  • 3.1_139 environment.yaml

Size: 51.8 KB - Last synced: 7 months ago - Pushed: over 1 year ago

greenelab/scihub
Source code and data analyses for the Sci-Hub Coverage Study
  • 3.1.* environment.yml

Size: 18.3 MB - Last synced: 12 days ago - Pushed: about 3 years ago

andrealauria104/ngsRtools
A Suite of R Packages for NGS-based Epigenomic Data Analysis.
  • 3.1_139.* data/environment.yml

Size: 714 KB - Last synced: 27 days ago - Pushed: about 1 year ago

brucemoran/somatic_n-of-1
Somatic-Germline n-of-1 DNAseq Analysis
  • environment.yaml

Size: 317 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

bokulich-lab/advanced-comp-bio-tutorial
Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022
  • 3.1_153 environment.yml

Size: 77.9 MB - Last synced: 12 months ago - Pushed: 12 months ago

XinyanHe/INFOX Fork of FORCOLAB-UofT/INFOX
This is a prototype for overview of GitHub forks.
  • 3.1_131 environment.yaml

Size: 12.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

Bernt/MITOS
MITOS
  • 3.1_153.* environment.yaml

Last synced: 14 days ago

SERVIR/mekong-swat-django
  • 3.1_158 environment.yml

Size: 1.58 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

sadamov/phenology_curve_fitting
Fitting of phenological season description curves to historical pollen measurements.
  • 3.1_153 environment.yml

Size: 53.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

omicsclass/biodocker
docker images for bioinformatics
  • 3.1_147.* ampliseq-q2/environment.yml

Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago

russHyde/mast-shiny
Notes / code from working through "Mastering Shiny". Written while running a R4DS bookclub
  • 3.1_152.* conda/environment.yml

Size: 154 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

greenelab/2022-cf-sputum
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways
  • 3.1_141 environment.yml

Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago

krinsman/droplets
  • 3.1_150 environment.yml

Last synced: over 1 year ago

kirbyvisp/marmo
MARMO is a Modular and Robust pipeline for iMmune single-cell multi-Omics implemented in Snakemake.
  • 3.1_131 environment.yaml

Size: 2.86 MB - Last synced: over 1 year ago

wrightdw/COG-UK-ME
COG-UK Mutation Explorer
  • 3.1_152 environment.yml

Size: 105 MB - Last synced: 3 months ago - Pushed: 3 months ago

kevinpryan/caf-subtype-analysis
  • 3.1_158 environment.yml

Size: 56.9 MB - Last synced: 8 months ago - Pushed: 8 months ago

mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow
  • 3.1_158 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

gwcbi/haphpipe
NGS viral assembly and population genetics
  • 3.1_128 environment.yml

Size: 2.35 MB - Last synced: 7 months ago - Pushed: about 3 years ago

gonzalosm98/scRNA-SeqAnalysis
  • 3.1_155 environment.yml

Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

somadevrepo/goal-recommendation-engine
  • 3.1_131.* environment.yml

Size: 524 KB - Last synced: over 1 year ago

NatPombubpa/Qiime2_2022.8_binder
Qiime2_2022.8_binder test
  • 3.1_159.* environment.yml

Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago

adelemusa/met_pipeline
  • 3.1_141 environment.yml

Last synced: over 1 year ago

LankyCyril/merip-seq-2019
  • 3.1_141 environment.yaml

Size: 531 KB - Last synced: over 1 year ago

cjc77/Fogg-Lab-RNA-Seq-analysis
Preliminary analysis and informatics for TCGA gynecological cancer data
  • 3.1_152.* environment.yml

Size: 61.3 MB - Last synced: 4 months ago - Pushed: over 1 year ago

mfreitas/docker_dev_image
  • 3.1_137 environment.yml

Last synced: over 1 year ago

mfreitas/dsclub_jupyter
Jupyter docker image
  • 3.1_137 environment.yml

Last synced: over 1 year ago

EpiDiverse/dmr
The EpiDiverse Differentially Methylated Regions Pipeline, implemented with Nextflow
  • 3.1_149.* env/environment.yml

Size: 1.41 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

athompson1991/crypto-project
Final project for machine learning class
  • 3.1_137 environment.yml

Size: 1.68 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

dieterich-lab/ImmunOMICS
  • 3.1_160 environment.yml

Size: 27.6 MB - Last synced: about 2 months ago - Pushed: about 1 year ago

liaoherui/GDmicro
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.
  • 3.1_150 environment.yaml

Size: 3.57 MB - Last synced: 22 days ago - Pushed: about 2 months ago

gagneurlab/transmicron
  • 3.1_157.* environment.yml

Size: 16.7 MB - Last synced: 4 days ago - Pushed: over 1 year ago

clemente-lab/mmeds-meta
A database for storing and analyzing omics data
  • 3.1_152 docs/environment.yml

Size: 890 MB - Last synced: about 2 months ago - Pushed: 3 months ago

samwitham/PromoterArchitecture
Arabidopsis thaliana promoter architecture analysis pipeline
  • 3.1_149 environment.yml

Size: 187 MB - Last synced: 7 months ago - Pushed: 9 months ago

SteMIDIfactory/P-DOR
Quick and easy outbreak reconstruction pipeline
  • 3.1_157 environment.yml

Size: 37.7 MB - Last synced: 3 months ago - Pushed: 8 months ago

oscarlr/IGenotyper
  • 3.1_137 environment.yml

Size: 10.2 MB - Last synced: 3 months ago - Pushed: 3 months ago

lkmklsmn/DrivAER
DrivAER: Identification of Driving transcriptional programs using AutoEncoder based Relevance scores
  • 3.1_139 environment.yml

Size: 116 MB - Last synced: 7 months ago - Pushed: over 3 years ago

mjaquiery/genetics-snakemake
Snakemake workflow for handling PRS scores and relatedness calculations for human genetic data from ALSPAC.
  • 3.1_161 workflow/envs/environment.yaml

Size: 1.44 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

paezha/PyERT-BLACK
Capstone project for course 4G06
  • 3.1_159 environment.yml

Size: 23.2 MB - Last synced: 10 days ago - Pushed: about 1 year ago

phbradley/tcr-gwas
Collaboration to find genetic variation associated with TCR repertoire differences
  • 3.1_152 environment.yml

Size: 176 MB - Last synced: 26 days ago - Pushed: over 2 years ago

duncanberger/nxf-BATQual
Bacterial genome assembly, annotation and typing pipeline.
  • 3.1_162 environment.yaml

Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago

magdalenarussell/mechanistic-trimming
Collaboration to identify sequence-level determinants of nucleotide trimming during V(D)J recombination
  • 3.1_159 environment.yml

Size: 185 MB - Last synced: 19 days ago - Pushed: 19 days ago

doku/actions_test
  • 3.1_139 environment.yml

Size: 2.19 MB - Last synced: 9 months ago - Pushed: over 3 years ago

MikhailovBair/breath-detection
Breath detection for data science section of BestHack
  • 3.1_139 environment.yml

Size: 32 MB - Last synced: 5 months ago - Pushed: about 3 years ago

jacobschwan/conda-rstudio
RStudio Server with conda pacakge management
  • 3.1_139 environment.yml

Size: 22.5 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

neavemj/mappd
Metagenomic Analysis Pipeline for Pathogen Discovery
  • 3.1_139 environment.yaml

Size: 924 KB - Last synced: 8 months ago - Pushed: 8 months ago

russHyde/bfx_201909
Statistical Bioinformatics presentation
  • 3.1_141.* envs/environment.yml

Size: 327 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

andurill/ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI
  • 3.1_137.* environment.yaml

Size: 276 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

EpiDiverse/ewas
The EpiDiverse Epigenome-Wide Association Study Pipeline, implemented with Nextflow
  • 3.1_152.* env/environment.yml

Size: 20.9 MB - Last synced: 7 months ago - Pushed: about 1 year ago

AmirAlavi/sc-alignment-benchmarking
Supporting data and benchmarking software for our SCIPR paper. (Under Construction)
  • 3.1_139 data/environment.yml

Size: 45.6 MB - Last synced: 10 months ago - Pushed: almost 4 years ago

IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020
  • 3.1_147 environment.yml

Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago

dpryan79/kiwanisbewegt
Automatic participant map generation for kiwanisbewegt
  • 3.1_152 environment.yaml

Size: 19.4 MB - Last synced: 9 months ago - Pushed: about 2 years ago

eviatarbach/glaciers
Code for the paper "How sensitive are mountain glaciers to climate change?"
  • 3.1_131 environment.yml

Size: 78.5 MB - Last synced: 8 months ago - Pushed: about 6 years ago

rpolicastro/barcode-generator
  • 3.1_140 SINGULARITY/environment.yml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: almost 5 years ago

mapcloud/phusion-jupyterlab
  • 3.1_128 environment.yml

Size: 4.88 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago

storm-platform/storm-gallery
A gallery of interesting codes based on Storm Platform technologies.
  • 3.1_155.* applications/bdc-article/compendium/environment.yml
  • 3.1_155.* applications/deforestation-detection/compendium/fraction-classification/environment.yml
  • 3.1_155.* applications/sits-article/compendium/environment.yml

Size: 42.7 MB - Last synced: 23 days ago - Pushed: over 1 year ago