Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: conda: r-nlme
21 versions
Latest release: over 1 year ago
65 dependent packages
View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/r-nlme
Dependent Repos 86
rjof/coronavirus_dashboard_mexico
Fork of https://github.com/RamiKrispin/coronavirus_dashboard with minimal tweaks for Mexico- 3.1_139 environment.yml
Size: 12.8 MB - Last synced: 5 months ago - Pushed: over 1 year ago
rjof/rjof.github.io
Personal projects- 3.1_139 docs/environment.yml
- 3.1_139 environment.yml
Size: 38.5 MB - Last synced: 5 months ago - Pushed: over 1 year ago
ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)- 3.1_141 containers/qiime2-2019.10/environment.yml
- 3.1_143 containers/r-3.6.1/environment.yml
Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago
FORCOLAB-UofT/INFOX
This is a prototype for overview of GitHub forks.- 3.1_131 environment.yaml
Size: 14.3 MB - Last synced: about 2 months ago - Pushed: 3 months ago
nixiwang/PISAnalysisTool
An analysis tool of multi-level modeling for PISA dataset- 3.1_137 environment.yml
Size: 44.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
brucemoran/tumour_only
Tumour-only DNA sequencing analysis- 3.1_150 environment.yaml
Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
btmartin721/ClineHelpR
Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables- 3.1_152 environment.yml
Size: 93.4 MB - Last synced: 7 months ago - Pushed: almost 2 years ago
afuentri/B-MyRepCLL
pipeline for a consensus-oriented analysis of B-cell clones- 3.1_139 environment.yml
Size: 291 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
casrssk/WGS-analysis-in-C_trachomatis
- 3.1_144 linux/sample/envs/environment.yml
Size: 7.39 MB - Last synced: 4 months ago - Pushed: about 2 years ago
jseeman/publication-supplements
Code and data for research replication and reuse- 3.1_139 2022_arsia/environment.yaml
Size: 511 KB - Last synced: about 1 year ago - Pushed: about 2 years ago
villegar/DoGE
Differential Gene Expression Analysis Pipeline- 3.1_139.* environment.yml
Size: 16 MB - Last synced: 9 months ago - Pushed: almost 3 years ago
russHyde/russ-hyde
Public content for my blog- 3.1_140.* envs/environment.yaml
Size: 5.17 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
luisacusick/VC-Optimus
Bioinformatics pipeline to take short reads, align them to a reference, and call SNPs.- 3.1_139 environment.yml
Size: 138 KB - Last synced: about 1 year ago - Pushed: about 3 years ago
lfnothias/qiime2
- 3.1_150.* environment.yml
Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
YeoLab/MINES
(m)6A (I)dentification Using (N)anopor(E) (S)equencing- 3.1_139 environment.yml
Size: 8.46 MB - Last synced: about 20 hours ago - Pushed: over 3 years ago
InfantLab/little-drummers
- 3.1_139 analysis/environment.yml
Size: 1.04 GB - Last synced: about 1 year ago - Pushed: almost 2 years ago
mskcc/ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI- 3.1_137.* environment.yaml
Size: 276 MB - Last synced: 2 days ago - Pushed: over 1 year ago
krinsman/dissertation
Source code and Jupyter notebooks related to PhD dissertation.- 3.1_152 environment.yml
Last synced: over 1 year ago
vaqm2/custom_gwas
Python Code using CyVCF2 to run custom GWAS models on imputed VCF files- 3.1_158.* environment.yml
Size: 958 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
BioinfoNet/TeachingJupyterNotebooks
Training materials for the Open Science Workshop held in Nariobi- 3.1_131 environment.yml
Size: 16 MB - Last synced: about 1 year ago - Pushed: over 5 years ago
broadinstitute/malaria-amplicon-pipeline
- 3.1_150.* environment.yml
Size: 171 KB - Last synced: about 1 year ago - Pushed: about 1 year ago
moj-analytical-services/DefCalc
The deflator calculator.- 3.1_147 environment.yml
Size: 4.83 MB - Last synced: 10 months ago - Pushed: 10 months ago
evoosa/16S_bacteria_detector
Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms- 3.1_147 src/environment.yml
Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
Wiselab2/NGPINT
- 3.1_122 environment.yml
Size: 300 MB - Last synced: 7 months ago - Pushed: over 2 years ago
edotau/fishingcluster
- 3.1_150 workflows/atacseq/environment.yml
Size: 3.74 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
davidecolla/semantic_coherence_markers
- 3.1_139 environment.yml
Size: 390 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
kutaslab/fitgrid
Multichannel event-related time-series regression modeling for EEG, MEG, and sensor array data- 3.1_152 binder/environment.yml
Size: 124 MB - Last synced: 25 days ago - Pushed: over 1 year ago
phylo42/PEWO
Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees- 3.1_144 envs/environment.yaml
Size: 7.82 MB - Last synced: 3 months ago - Pushed: 8 months ago
web-mev/mev-normalize
- 3.1_150 docker/environment.yml
Size: 16.6 KB - Last synced: 19 days ago - Pushed: 3 months ago
liaoherui/StrainScan
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers- 3.1_150 environment.yaml
Size: 56.7 MB - Last synced: 6 days ago - Pushed: about 1 month ago
nlm-irp-jianglab/Evolink
:palm_tree: A Phylogenetic Approach for Rapid Identification of Genotype-Phenotype Associations in Large-scale Microbial Multi-species Data- 3.1_158 environment.yml
Size: 251 MB - Last synced: 9 months ago - Pushed: 9 months ago
GWeindel/lecture_R
A really short introduction (4 hours lecture) for psychology doctoral students at Aix Marseille University.- 3.1_152 environment.yml
Size: 4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
ColtonGarelli/notebooks2020
- 3.1_148.* environment.yml
Size: 20.5 KB - Last synced: about 2 months ago - Pushed: almost 4 years ago
dahjan/DMS_opt
- 3.1_139 environment.yml
Size: 7.82 MB - Last synced: 7 months ago - Pushed: over 3 years ago
happykhan/journal
Citation lists- 3.1_157 environment.yml
Size: 28 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
ajayago/NCMF_bioinformatics
- 3.1_139 CMF/environment.yml
Size: 202 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
quadram-institute-bioscience/dadaist2
Dadaist2 đš Highway to R- 3.1_152 lab/class/environment.yml
Size: 39.4 MB - Last synced: 3 months ago - Pushed: 3 months ago
kelly-sovacool/meta-repo
A meta-repository to organize my public projects.- 3.1_141 config/environment.yml
Size: 33.2 MB - Last synced: 9 months ago - Pushed: 9 months ago
jamesfitton/cxr
Intertidal water occurrence generator from Sentinel 2 satellite data and Google Earth Engine- 3.1_159 environment.yml
Size: 1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
yangmqglobe/dapipe
èȘćšćç ATAC-Seq ćææ”çš- 3.1_152.* environment.yml
Size: 193 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
aw236/boilerplate_code
best functions- 3.1_139.* environment.yml
Size: 380 KB - Last synced: 27 days ago - Pushed: 12 months ago
chejuic/medcalc_R
medcalc using Shiny- 3.1_139 environment.yaml
Size: 51.8 KB - Last synced: 7 months ago - Pushed: over 1 year ago
greenelab/scihub
Source code and data analyses for the Sci-Hub Coverage Study- 3.1.* environment.yml
Size: 18.3 MB - Last synced: 12 days ago - Pushed: about 3 years ago
andrealauria104/ngsRtools
A Suite of R Packages for NGS-based Epigenomic Data Analysis.- 3.1_139.* data/environment.yml
Size: 714 KB - Last synced: 27 days ago - Pushed: about 1 year ago
brucemoran/somatic_n-of-1
Somatic-Germline n-of-1 DNAseq Analysis- environment.yaml
Size: 317 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
bokulich-lab/advanced-comp-bio-tutorial
Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022- 3.1_153 environment.yml
Size: 77.9 MB - Last synced: 12 months ago - Pushed: 12 months ago
XinyanHe/INFOX Fork of FORCOLAB-UofT/INFOX
This is a prototype for overview of GitHub forks.- 3.1_131 environment.yaml
Size: 12.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
SERVIR/mekong-swat-django
- 3.1_158 environment.yml
Size: 1.58 MB - Last synced: about 2 months ago - Pushed: over 1 year ago
sadamov/phenology_curve_fitting
Fitting of phenological season description curves to historical pollen measurements.- 3.1_153 environment.yml
Size: 53.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
omicsclass/biodocker
docker images for bioinformatics- 3.1_147.* ampliseq-q2/environment.yml
Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago
russHyde/mast-shiny
Notes / code from working through "Mastering Shiny". Written while running a R4DS bookclub- 3.1_152.* conda/environment.yml
Size: 154 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago
greenelab/2022-cf-sputum
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways- 3.1_141 environment.yml
Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago
kirbyvisp/marmo
MARMO is a Modular and Robust pipeline for iMmune single-cell multi-Omics implemented in Snakemake.- 3.1_131 environment.yaml
Size: 2.86 MB - Last synced: over 1 year ago
wrightdw/COG-UK-ME
COG-UK Mutation Explorer- 3.1_152 environment.yml
Size: 105 MB - Last synced: 3 months ago - Pushed: 3 months ago
kevinpryan/caf-subtype-analysis
- 3.1_158 environment.yml
Size: 56.9 MB - Last synced: 8 months ago - Pushed: 8 months ago
mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow- 3.1_158 environment.yml
Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
gwcbi/haphpipe
NGS viral assembly and population genetics- 3.1_128 environment.yml
Size: 2.35 MB - Last synced: 7 months ago - Pushed: about 3 years ago
gonzalosm98/scRNA-SeqAnalysis
- 3.1_155 environment.yml
Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
somadevrepo/goal-recommendation-engine
- 3.1_131.* environment.yml
Size: 524 KB - Last synced: over 1 year ago
NatPombubpa/Qiime2_2022.8_binder
Qiime2_2022.8_binder test- 3.1_159.* environment.yml
Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago
cjc77/Fogg-Lab-RNA-Seq-analysis
Preliminary analysis and informatics for TCGA gynecological cancer data- 3.1_152.* environment.yml
Size: 61.3 MB - Last synced: 4 months ago - Pushed: over 1 year ago
EpiDiverse/dmr
The EpiDiverse Differentially Methylated Regions Pipeline, implemented with Nextflow- 3.1_149.* env/environment.yml
Size: 1.41 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
athompson1991/crypto-project
Final project for machine learning class- 3.1_137 environment.yml
Size: 1.68 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
dieterich-lab/ImmunOMICS
- 3.1_160 environment.yml
Size: 27.6 MB - Last synced: about 2 months ago - Pushed: about 1 year ago
liaoherui/GDmicro
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.- 3.1_150 environment.yaml
Size: 3.57 MB - Last synced: 22 days ago - Pushed: about 2 months ago
gagneurlab/transmicron
- 3.1_157.* environment.yml
Size: 16.7 MB - Last synced: 4 days ago - Pushed: over 1 year ago
clemente-lab/mmeds-meta
A database for storing and analyzing omics data- 3.1_152 docs/environment.yml
Size: 890 MB - Last synced: about 2 months ago - Pushed: 3 months ago
samwitham/PromoterArchitecture
Arabidopsis thaliana promoter architecture analysis pipeline- 3.1_149 environment.yml
Size: 187 MB - Last synced: 7 months ago - Pushed: 9 months ago
SteMIDIfactory/P-DOR
Quick and easy outbreak reconstruction pipeline- 3.1_157 environment.yml
Size: 37.7 MB - Last synced: 3 months ago - Pushed: 8 months ago
oscarlr/IGenotyper
- 3.1_137 environment.yml
Size: 10.2 MB - Last synced: 3 months ago - Pushed: 3 months ago
lkmklsmn/DrivAER
DrivAER: Identification of Driving transcriptional programs using AutoEncoder based Relevance scores- 3.1_139 environment.yml
Size: 116 MB - Last synced: 7 months ago - Pushed: over 3 years ago
mjaquiery/genetics-snakemake
Snakemake workflow for handling PRS scores and relatedness calculations for human genetic data from ALSPAC.- 3.1_161 workflow/envs/environment.yaml
Size: 1.44 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
paezha/PyERT-BLACK
Capstone project for course 4G06- 3.1_159 environment.yml
Size: 23.2 MB - Last synced: 10 days ago - Pushed: about 1 year ago
phbradley/tcr-gwas
Collaboration to find genetic variation associated with TCR repertoire differences- 3.1_152 environment.yml
Size: 176 MB - Last synced: 26 days ago - Pushed: over 2 years ago
duncanberger/nxf-BATQual
Bacterial genome assembly, annotation and typing pipeline.- 3.1_162 environment.yaml
Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago
magdalenarussell/mechanistic-trimming
Collaboration to identify sequence-level determinants of nucleotide trimming during V(D)J recombination- 3.1_159 environment.yml
Size: 185 MB - Last synced: 19 days ago - Pushed: 19 days ago
doku/actions_test
- 3.1_139 environment.yml
Size: 2.19 MB - Last synced: 9 months ago - Pushed: over 3 years ago
MikhailovBair/breath-detection
Breath detection for data science section of BestHack- 3.1_139 environment.yml
Size: 32 MB - Last synced: 5 months ago - Pushed: about 3 years ago
jacobschwan/conda-rstudio
RStudio Server with conda pacakge management- 3.1_139 environment.yml
Size: 22.5 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago
neavemj/mappd
Metagenomic Analysis Pipeline for Pathogen Discovery- 3.1_139 environment.yaml
Size: 924 KB - Last synced: 8 months ago - Pushed: 8 months ago
russHyde/bfx_201909
Statistical Bioinformatics presentation- 3.1_141.* envs/environment.yml
Size: 327 KB - Last synced: about 1 year ago - Pushed: over 4 years ago
andurill/ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI- 3.1_137.* environment.yaml
Size: 276 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
EpiDiverse/ewas
The EpiDiverse Epigenome-Wide Association Study Pipeline, implemented with Nextflow- 3.1_152.* env/environment.yml
Size: 20.9 MB - Last synced: 7 months ago - Pushed: about 1 year ago
AmirAlavi/sc-alignment-benchmarking
Supporting data and benchmarking software for our SCIPR paper. (Under Construction)- 3.1_139 data/environment.yml
Size: 45.6 MB - Last synced: 10 months ago - Pushed: almost 4 years ago
IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020- 3.1_147 environment.yml
Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago
dpryan79/kiwanisbewegt
Automatic participant map generation for kiwanisbewegt- 3.1_152 environment.yaml
Size: 19.4 MB - Last synced: 9 months ago - Pushed: about 2 years ago
eviatarbach/glaciers
Code for the paper "How sensitive are mountain glaciers to climate change?"- 3.1_131 environment.yml
Size: 78.5 MB - Last synced: 8 months ago - Pushed: about 6 years ago
rpolicastro/barcode-generator
- 3.1_140 SINGULARITY/environment.yml
Size: 21.5 KB - Last synced: about 1 year ago - Pushed: almost 5 years ago
mapcloud/phusion-jupyterlab
- 3.1_128 environment.yml
Size: 4.88 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago
storm-platform/storm-gallery
A gallery of interesting codes based on Storm Platform technologies.- 3.1_155.* applications/bdc-article/compendium/environment.yml
- 3.1_155.* applications/deforestation-detection/compendium/fraction-classification/environment.yml
- 3.1_155.* applications/sits-article/compendium/environment.yml
Size: 42.7 MB - Last synced: 23 days ago - Pushed: over 1 year ago