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GitHub / greenelab / 2022-cf-sputum

Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/greenelab%2F2022-cf-sputum

Stars: 1
Forks: 1
Open Issues: 3

License: None
Language: Jupyter Notebook
Repo Size: 4.92 MB
Dependencies: 450

Created: about 2 years ago
Updated: 9 months ago
Last pushed: over 1 year ago
Last synced: 9 months ago

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Dependencies

environment.yml conda

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amply 0.1.5
appdirs 1.4.4
appnope 0.1.3
argon2-cffi 21.3.0
argon2-cffi-bindings 21.2.0
backcall 0.2.0
backports 1.0
backports.functools_lru_cache 1.6.4
backports.zoneinfo 0.2.1
beautifulsoup4 4.11.1
bioconductor-annotate 1.64.0
bioconductor-annotationdbi 1.48.0
bioconductor-biobase 2.46.0
bioconductor-biocfilecache 1.10.0
bioconductor-biocgenerics 0.32.0
bioconductor-biocparallel 1.20.0
bioconductor-biomart 2.42.0
bioconductor-biostrings 2.54.0
bioconductor-bsgenome 1.54.0
bioconductor-bumphunter 1.28.0
bioconductor-clusterprofiler 3.14.0
bioconductor-deformats 1.14.0
bioconductor-delayedarray 0.12.0
bioconductor-derfinder 1.20.0
bioconductor-derfinderhelper 1.20.0
bioconductor-deseq2 1.26.0
bioconductor-do.db 2.9
bioconductor-dose 3.12.0
bioconductor-edger 3.28.0
bioconductor-enrichplot 1.6.0
bioconductor-fgsea 1.12.0
bioconductor-genefilter 1.68.0
bioconductor-geneplotter 1.64.0
bioconductor-genomeinfodb 1.22.0
bioconductor-genomeinfodbdata 1.2.2
bioconductor-genomicalignments 1.22.0
bioconductor-genomicfeatures 1.38.0
bioconductor-genomicfiles 1.22.0
bioconductor-genomicranges 1.38.0
bioconductor-geoquery 2.54.0
bioconductor-go.db 3.10.0
bioconductor-gosemsim 2.12.0
bioconductor-graph 1.64.0
bioconductor-gseabase 1.48.0
bioconductor-gsva 1.34.0
bioconductor-iranges 2.20.0
bioconductor-limma 3.42.0
bioconductor-qvalue 2.18.0
bioconductor-recount 1.12.0
bioconductor-rhtslib 1.18.0
bioconductor-rsamtools 2.2.0
bioconductor-rtracklayer 1.46.0
bioconductor-s4vectors 0.24.0
bioconductor-summarizedexperiment 1.16.0
bioconductor-variantannotation 1.32.0
bioconductor-xvector 0.26.0
bioconductor-zlibbioc 1.32.0
bleach 5.0.0
brotli 1.0.9
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bwidget 1.9.14
bzip2 1.0.8
ca-certificates 2022.4.26
cairo 1.16.0
cctools_osx-64 973.0.1
certifi 2021.10.8
cffi 1.14.4
charset-normalizer 2.0.12
clang 13.0.1
clang-13 13.0.1
clang_osx-64 13.0.1
clangxx 13.0.1
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coincbc 2.10.3
compiler-rt 13.0.1
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cryptography 36.0.2
curl 7.68.0
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giflib 5.2.1
gitdb 4.0.9
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glib 2.65.0
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icu 58.2
idna 3.3
importlib-metadata 4.11.3
importlib_resources 5.7.1
ipykernel 5.1.1
ipython 7.33.0
ipython_genutils 0.2.0
ipywidgets 7.7.0
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joblib 1.1.0
jpeg 9e
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libbrotlidec 1.0.9
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libcblas 3.8.0
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libcurl 7.68.0
libcxx 13.0.1
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libedit 3.1.20191231
libffi 3.2.1
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llvm-openmp 14.0.3
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make 4.3
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numpy 1.19.5
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openssl 1.1.1o
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pango 1.42.4
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plac 1.3.5
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py 1.11.0
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pyopenssl 22.0.0
pyparsing 3.0.8
pyqt 5.9.2
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pysocks 1.7.1
python 3.7.3
python-dateutil 2.8.2
python-fastjsonschema 2.15.3
python-tzdata 2022.1
python_abi 3.7
pytz 2022.1
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