Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: conda: r-digest
17 versions
Latest release: over 1 year ago
120 dependent packages
View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/r-digest
Dependent Repos 105
rjof/coronavirus_dashboard_mexico
Fork of https://github.com/RamiKrispin/coronavirus_dashboard with minimal tweaks for Mexico- 0.6.18 environment.yml
Size: 12.8 MB - Last synced: 5 months ago - Pushed: over 1 year ago
rjof/rjof.github.io
Personal projects- 0.6.18 docs/environment.yml
- 0.6.18 environment.yml
Size: 38.5 MB - Last synced: 5 months ago - Pushed: over 1 year ago
ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)- 0.6.22 containers/qiime2-2019.10/environment.yml
- 0.6.23 containers/r-3.6.1/environment.yml
Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago
FORCOLAB-UofT/INFOX
This is a prototype for overview of GitHub forks.- 0.6.13 environment.yaml
Size: 14.3 MB - Last synced: about 2 months ago - Pushed: 3 months ago
nixiwang/PISAnalysisTool
An analysis tool of multi-level modeling for PISA dataset- 0.6.18 environment.yml
Size: 44.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
brucemoran/tumour_only
Tumour-only DNA sequencing analysis- 0.6.27 environment.yaml
Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
btmartin721/ClineHelpR
Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables- 0.6.27 environment.yml
Size: 93.4 MB - Last synced: 7 months ago - Pushed: almost 2 years ago
casrssk/WGS-analysis-in-C_trachomatis
- 0.6.24 linux/sample/envs/environment.yml
Size: 7.39 MB - Last synced: 4 months ago - Pushed: about 2 years ago
jseeman/publication-supplements
Code and data for research replication and reuse- 0.6.18 2022_arsia/environment.yaml
Size: 511 KB - Last synced: about 1 year ago - Pushed: about 2 years ago
villegar/DoGE
Differential Gene Expression Analysis Pipeline- 0.6.18.* environment.yml
Size: 16 MB - Last synced: 10 months ago - Pushed: almost 3 years ago
villegar/xxii-simmac
XXII SIMMAC (International Symposium on Mathematical Methods Applied to Sciences) - University of Costa Rica- 0.6.23.* environment.yml
Size: 11.4 MB - Last synced: 10 months ago - Pushed: almost 3 years ago
russHyde/russ-hyde
Public content for my blog- 0.6.19.* envs/environment.yaml
Size: 5.17 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
luisacusick/VC-Optimus
Bioinformatics pipeline to take short reads, align them to a reference, and call SNPs.- 0.6.18 environment.yml
Size: 138 KB - Last synced: about 1 year ago - Pushed: about 3 years ago
lfnothias/qiime2
- 0.6.27.* environment.yml
Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
YeoLab/MINES
(m)6A (I)dentification Using (N)anopor(E) (S)equencing- 0.6.25 environment.yml
Size: 8.46 MB - Last synced: about 16 hours ago - Pushed: over 3 years ago
InfantLab/little-drummers
- 0.6.18 analysis/environment.yml
Size: 1.04 GB - Last synced: about 1 year ago - Pushed: almost 2 years ago
mskcc/ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI- 0.6.15.* environment.yaml
Size: 276 MB - Last synced: 3 days ago - Pushed: over 1 year ago
krinsman/dissertation
Source code and Jupyter notebooks related to PhD dissertation.- 0.6.27 environment.yml
Last synced: over 1 year ago
vaqm2/custom_gwas
Python Code using CyVCF2 to run custom GWAS models on imputed VCF files- 0.6.29.* environment.yml
Size: 958 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
BioinfoNet/TeachingJupyterNotebooks
Training materials for the Open Science Workshop held in Nariobi- 0.6.13 environment.yml
Size: 16 MB - Last synced: about 1 year ago - Pushed: over 5 years ago
broadinstitute/malaria-amplicon-pipeline
- 0.6.27.* environment.yml
Size: 171 KB - Last synced: about 1 year ago - Pushed: about 1 year ago
moj-analytical-services/DefCalc
The deflator calculator.- 0.6.25 environment.yml
Size: 4.83 MB - Last synced: 10 months ago - Pushed: 10 months ago
evoosa/16S_bacteria_detector
Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms- 0.6.25 src/environment.yml
Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
Wiselab2/NGPINT
- 0.6.9 environment.yml
Size: 300 MB - Last synced: 7 months ago - Pushed: over 2 years ago
davidecolla/semantic_coherence_markers
- 0.6.18 environment.yml
Size: 390 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
kutaslab/fitgrid
Multichannel event-related time-series regression modeling for EEG, MEG, and sensor array data- 0.6.27 binder/environment.yml
Size: 124 MB - Last synced: 26 days ago - Pushed: over 1 year ago
phylo42/PEWO
Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees- 0.6.24 envs/environment.yaml
Size: 7.82 MB - Last synced: 3 months ago - Pushed: 8 months ago
davidlevybooth/Rhodococcus_Transcriptomics
Rhodococcus Transcriptomic Pipeline- 0.6.12.* environment.yaml
Size: 21.5 KB - Last synced: about 1 year ago - Pushed: about 5 years ago
web-mev/mev-normalize
- 0.6.27 docker/environment.yml
Size: 16.6 KB - Last synced: 20 days ago - Pushed: 3 months ago
liaoherui/StrainScan
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers- 0.6.29 environment.yaml
Size: 56.7 MB - Last synced: 6 days ago - Pushed: about 1 month ago
nlm-irp-jianglab/Evolink
:palm_tree: A Phylogenetic Approach for Rapid Identification of Genotype-Phenotype Associations in Large-scale Microbial Multi-species Data- 0.6.29 environment.yml
Size: 251 MB - Last synced: 9 months ago - Pushed: 9 months ago
rki-mf1/vocal
Vocal is a simple Variants Of Concern ALert system script. Doc https://rki-mf1.github.io/vocal-doc/- 0.6.28.* environment.yml
Size: 3.31 MB - Last synced: about 2 months ago - Pushed: over 1 year ago
GWeindel/lecture_R
A really short introduction (4 hours lecture) for psychology doctoral students at Aix Marseille University.- 0.6.27 environment.yml
Size: 4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
apratimbhattacharyya18/nerf
- 0.6.15 environment.yml
Size: 491 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
ColtonGarelli/notebooks2020
- 0.6.* environment.yml
Size: 20.5 KB - Last synced: 2 months ago - Pushed: almost 4 years ago
dahjan/DMS_opt
- 0.6.18 environment.yml
Size: 7.82 MB - Last synced: 7 months ago - Pushed: over 3 years ago
happykhan/journal
Citation lists- 0.6.29 environment.yml
Size: 28 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
ajayago/NCMF_bioinformatics
- 0.6.18 CMF/environment.yml
Size: 202 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
quadram-institute-bioscience/dadaist2
Dadaist2 đš Highway to R- 0.6.27 lab/class/environment.yml
Size: 39.4 MB - Last synced: 3 months ago - Pushed: 3 months ago
moj-analytical-services/rshiny-template
Template RShiny project- 0.6.15 environment.yml
Size: 73.2 KB - Last synced: 3 months ago - Pushed: over 1 year ago
kelly-sovacool/meta-repo
A meta-repository to organize my public projects.- 0.6.22 config/environment.yml
Size: 33.2 MB - Last synced: 9 months ago - Pushed: 9 months ago
jamesfitton/cxr
Intertidal water occurrence generator from Sentinel 2 satellite data and Google Earth Engine- 0.6.29 environment.yml
Size: 1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
snakemake/snakemake-wrappers
This repository contains wrapper scripts for fast integration of command line tools.- 0.6.12.* bio/rubic/environment.yaml
Size: 13 MB - Last synced: over 1 year ago
yangmqglobe/dapipe
èȘćšćç ATAC-Seq ćææ”çš- 0.6.27.* environment.yml
Size: 193 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
aw236/boilerplate_code
best functions- 0.6.18.* environment.yml
Size: 380 KB - Last synced: 27 days ago - Pushed: 12 months ago
andrealauria104/ngsRtools
A Suite of R Packages for NGS-based Epigenomic Data Analysis.- 0.6.18.* data/environment.yml
Size: 714 KB - Last synced: 27 days ago - Pushed: about 1 year ago
sadamov/pollenmaps
Creating some nice maps in R- 0.6.27 environment.yml
Size: 79.6 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
bokulich-lab/advanced-comp-bio-tutorial
Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022- 0.6.28 environment.yml
Size: 77.9 MB - Last synced: 12 months ago - Pushed: 12 months ago
Colorado-State-University-CMB/Intro-to-qCMB-2022
Class work for Intro to qCMB- 0.6.29 R_on_Summit/environment.yml
Size: 31.4 MB - Last synced: about 2 months ago - Pushed: over 1 year ago
XinyanHe/INFOX Fork of FORCOLAB-UofT/INFOX
This is a prototype for overview of GitHub forks.- 0.6.13 environment.yaml
Size: 12.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
SERVIR/mekong-swat-django
- 0.6.29 environment.yml
Size: 1.58 MB - Last synced: about 2 months ago - Pushed: over 1 year ago
sadamov/phenology_curve_fitting
Fitting of phenological season description curves to historical pollen measurements.- 0.6.29 environment.yml
Size: 53.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
omicsclass/biodocker
docker images for bioinformatics- 0.6.25.* ampliseq-q2/environment.yml
Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago
jiangweiyao/RefNAAP
Reference based Nanopore assembly analysis pipeline- 0.6.27.* environment.yml
Size: 76.4 MB - Last synced: 29 days ago - Pushed: about 3 years ago
sadamov/CHAPo
Automatic Pollen Project in Switzerland - Implementation of Real-Time Data into Prognistic Model COSMO- 0.6.27 environment.yml
Size: 51.5 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
learningmachineslab/tutorials
introduction to machine learning notebooks for physics education researchers- 0.6.12 environment.yml
Size: 122 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
russHyde/mast-shiny
Notes / code from working through "Mastering Shiny". Written while running a R4DS bookclub- 0.6.27.* conda/environment.yml
Size: 154 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago
vfonsecad/multivariate_calibration
Multivariate calibration algorithms for regression in chemometrics- 0.6.18 environment.yml
Size: 126 MB - Last synced: about 1 year ago - Pushed: about 2 years ago
greenelab/2022-cf-sputum
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways- 0.6.27 environment.yml
Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago
letaylor/snakemake-qtl
Snakemake pipeline for molecular trait QTL mapping- 0.6.12 environment.yml
Size: 18.2 MB - Last synced: about 1 year ago - Pushed: over 4 years ago
kirbyvisp/marmo
MARMO is a Modular and Robust pipeline for iMmune single-cell multi-Omics implemented in Snakemake.- 0.6.12 environment.yaml
Size: 2.86 MB - Last synced: over 1 year ago
wrightdw/COG-UK-ME
COG-UK Mutation Explorer- 0.6.27 environment.yml
Size: 105 MB - Last synced: 3 months ago - Pushed: 3 months ago
naim-panjwani/LocusFocus
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)- 0.6.25 environments/environment.yml
Size: 76.7 MB - Last synced: 5 days ago - Pushed: about 1 year ago
kevinpryan/caf-subtype-analysis
- 0.6.29 environment.yml
Size: 56.9 MB - Last synced: 8 months ago - Pushed: 8 months ago
mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow- 0.6.29 environment.yml
Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
gonzalosm98/scRNA-SeqAnalysis
- 0.6.29 environment.yml
Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
dib-lab/elvers
(formerly eelpond) an automated RNA-Seq workflow system- 0.6.12.* elvers/rules/edgeR/environment.yml
Size: 106 MB - Last synced: 4 months ago - Pushed: over 3 years ago
NatPombubpa/Qiime2_2022.8_binder
Qiime2_2022.8_binder test- 0.6.29.* environment.yml
Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago
rahulbhatiak/aml
Files / Projects/ Notebooks relating to Advanced Machine Learning Course taken Fall 2020- 0.6.25 environment.yaml
Last synced: about 1 year ago
cjc77/Fogg-Lab-RNA-Seq-analysis
Preliminary analysis and informatics for TCGA gynecological cancer data- 0.6.27.* environment.yml
Size: 61.3 MB - Last synced: 4 months ago - Pushed: over 1 year ago
acc-bioinfo/ACC-environment
Conda environment and docker recipe that contains all software and libraries used for the ACC projects.- 0.6.15 environment.yml
Last synced: over 1 year ago
EpiDiverse/dmr
The EpiDiverse Differentially Methylated Regions Pipeline, implemented with Nextflow- 0.6.25.* env/environment.yml
Size: 1.41 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
Cuebiq/repo2docker Fork of jupyterhub/repo2docker
Turn repositories into Jupyter-enabled Docker images- tests/conda/py-r-postbuild-file/environment.yml
- tests/conda/r3.6-target-repo-dir-flag/environment.yml
Size: 2.89 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
athompson1991/crypto-project
Final project for machine learning class- 0.6.15 environment.yml
Size: 1.68 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
Skiracer33/stancon2019
notebook for stancon2019- 0.6.15 environment.yml
Size: 4.43 MB - Last synced: 12 months ago - Pushed: over 1 year ago
stefanuddenberg/psipypublish
A variant of Chris Sewell's ipypublish, designed for psychological research.- 0.6.15 template/environment_info/environment.yml
Size: 1.82 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
dieterich-lab/ImmunOMICS
- 0.6.30 environment.yml
Size: 27.6 MB - Last synced: 2 months ago - Pushed: about 1 year ago
sgvaze/generalized-category-discovery
Code for our CVPR 2022 paper 'Generalized Category Discovery'. Project page: https://www.robots.ox.ac.uk/~vgg/research/gcd/- 0.6.18 environment.yml
Size: 3.63 MB - Last synced: 24 days ago - Pushed: over 1 year ago
whole-tale/repo2docker Fork of jupyterhub/repo2docker
Turn git repositories into Jupyter enabled Docker Images- tests/conda/py-r-postbuild-file/environment.yml
- tests/conda/r3.6-target-repo-dir-flag/environment.yml
Size: 3.03 MB - Last synced: 4 months ago - Pushed: 4 months ago
liaoherui/GDmicro
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.- 0.6.27 environment.yaml
Size: 3.57 MB - Last synced: 22 days ago - Pushed: about 2 months ago
manics/repo2docker Fork of jupyterhub/repo2docker
Turn git repositories into Jupyter enabled Docker Images- tests/conda/py-r-postbuild-file/environment.yml
- tests/conda/r3.6-target-repo-dir-flag/environment.yml
Size: 3.15 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
marciosferreira/fish_behaviour_detection
- ==0.6.18 environment.yml
Size: 17.2 MB - Last synced: 7 months ago - Pushed: about 1 year ago
gagneurlab/transmicron
- 0.6.29.* environment.yml
Size: 16.7 MB - Last synced: 5 days ago - Pushed: over 1 year ago
clemente-lab/mmeds-meta
A database for storing and analyzing omics data- 0.6.27 docs/environment.yml
Size: 890 MB - Last synced: about 2 months ago - Pushed: 3 months ago
samwitham/PromoterArchitecture
Arabidopsis thaliana promoter architecture analysis pipeline- 0.6.25 environment.yml
Size: 187 MB - Last synced: 7 months ago - Pushed: 9 months ago
SteMIDIfactory/P-DOR
Quick and easy outbreak reconstruction pipeline- 0.6.29 environment.yml
Size: 37.7 MB - Last synced: 3 months ago - Pushed: 8 months ago
oscarlr/IGenotyper
- 0.6.15 environment.yml
Size: 10.2 MB - Last synced: 3 months ago - Pushed: 3 months ago
lkmklsmn/DrivAER
DrivAER: Identification of Driving transcriptional programs using AutoEncoder based Relevance scores- 0.6.18 environment.yml
Size: 116 MB - Last synced: 7 months ago - Pushed: over 3 years ago
mjaquiery/genetics-snakemake
Snakemake workflow for handling PRS scores and relatedness calculations for human genetic data from ALSPAC.- 0.6.31 workflow/envs/environment.yaml
Size: 1.44 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
paezha/PyERT-BLACK
Capstone project for course 4G06- 0.6.29 environment.yml
Size: 23.2 MB - Last synced: 11 days ago - Pushed: about 1 year ago