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GitHub / letaylor / snakemake-qtl
Snakemake pipeline for molecular trait QTL mapping
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/letaylor%2Fsnakemake-qtl
Stars: 5
Forks: 3
Open Issues: 0
License: mit
Language: Python
Repo Size: 18.2 MB
Dependencies:
143
Created: over 6 years ago
Updated: almost 3 years ago
Last pushed: over 4 years ago
Last synced: about 1 year ago
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Dependencies
environment.yml
conda
- aioeasywebdav 2.2.0
- aiohttp 3.0.6
- appdirs 1.4.3
- asn1crypto 0.24.0
- async-timeout 2.0.0
- attrs 17.4.0
- bcftools 1.7
- bcrypt 3.1.4
- bedtools 2.27.1
- bioconductor-qvalue 2.10.0
- blas 1.1
- boto3 1.6.3
- botocore 1.9.4
- bzip2 1.0.6
- ca-certificates 2018.1.18
- cachetools 2.0.1
- cairo 1.14.6
- certifi 2018.1.18
- cffi 1.11.5
- chardet 3.0.4
- configargparse 0.12.0
- cryptography 2.1.4
- curl 7.54.1
- datrie 0.7.1
- docutils 0.14
- dropbox 7.3.1
- filechunkio 1.6
- fontconfig 2.12.1
- freetype 2.7
- ftputil 3.2
- gawk 4.1.3
- gettext 0.19.8.1
- glib 2.51.4
- gmp 6.1.2
- google-auth 1.2.1
- google-auth-httplib2 0.0.2
- google-cloud-core 0.24.1
- google-cloud-storage 1.1.1
- google-resumable-media 0.0.2
- googleapis-common-protos 1.5.3
- graphite2 1.3.11
- gsl 2.2.1
- harfbuzz 1.4.3
- hdf5 1.10.1
- htslib 1.7
- httplib2 0.10.3
- icu 58.2
- idna 2.6
- idna_ssl 1.0.0
- jmespath 0.9.3
- jpeg 9b
- krb5 1.14.2
- libffi 3.2.1
- libgcc 7.2.0
- libgcc-ng 7.2.0
- libgfortran 3.0.0
- libiconv 1.15
- libpng 1.6.34
- libprotobuf 3.5.1.1
- libssh2 1.8.0
- libstdcxx-ng 7.2.0
- libtiff 4.0.9
- libxml2 2.9.5
- mpfr 3.1.5
- multidict 4.1.0
- ncurses 5.9
- numpy 1.14.1
- openblas 0.2.20
- openssl 1.0.2n
- pandas 0.22.0
- pango 1.40.4
- paramiko 2.4.0
- pcre 8.39
- pip 9.0.1
- pixman 0.34.0
- plink2 1.90b3.35
- prettytable 0.7.2
- protobuf 3.5.1.1
- psutil 5.4.3
- pyasn1 0.4.2
- pyasn1-modules 0.0.5
- pycparser 2.18
- pynacl 1.1.2
- pysftp 0.2.9
- python 3.5.5
- python-dateutil 2.6.1
- python-irodsclient 0.7.0
- pytz 2018.3
- pyyaml 3.12
- r-assertthat 0.1
- r-base 3.4.1
- r-cli 1.0.0
- r-colorspace 1.3_2
- r-crayon 1.3.4
- r-data.table 1.10.4
- r-dichromat 2.0_0
- r-digest 0.6.12
- r-getopt 1.20.0
- r-ggplot2 2.2.1
- r-glue 1.1.1
- r-gtable 0.2.0
- r-labeling 0.3
- r-lazyeval 0.2.0
- r-magrittr 1.5
- r-mass 7.3_48
- r-munsell 0.4.3
- r-optparse 1.4.4
- r-peer 1.3
- r-pillar 1.1.0
- r-plyr 1.8.4
- r-r6 2.2.0
- r-rcolorbrewer 1.1_2
- r-rcpp 0.12.13
- r-reshape2 1.4.3
- r-rlang 0.1.6
- r-scales 0.5.0
- r-stringi 1.1.6
- r-stringr 1.3.0
- r-tibble 1.4.2
- r-utf8 1.1.3
- r-viridislite 0.2.0
- ratelimiter 1.2.0
- readline 7.0
- requests 2.13.0
- rsa 3.1.4
- s3transfer 0.1.13
- samtools 1.7
- scipy 1.0.0
- setuptools 38.5.2
- six 1.11.0
- snakemake 4.7.0
- sqlite 3.20.1
- tabix 0.2.5
- tk 8.6.7
- urllib3 1.12
- vcftools 0.1.15
- wheel 0.30.0
- wrapt 1.10.11
- xmlrunner 1.7.7
- xz 5.2.3
- yaml 0.1.7
- yarl 1.1.1
- zlib 1.2.11