Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: configargparse


5 versions
Latest release: about 3 years ago
1 dependent package

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/configargparse

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/bw2%2FConfigArgParse

Dependent Repos 70

ZhenyanLuo/FindPlantNLRs
  • 1.5.3 environment.yml

Size: 361 KB - Last synced: 4 months ago - Pushed: 4 months ago

nlpia/nlpia-bot
A virtual assistant that actually assists!
  • 1.2.2 environment.yml

Size: 21.3 MB - Last synced: about 14 hours ago - Pushed: over 1 year ago

casrssk/WGS-analysis-in-C_trachomatis
  • 1.1 mac/samples/envs/environment.yml

Size: 7.39 MB - Last synced: 4 months ago - Pushed: about 2 years ago

kristen-schneider/genotype-encoding
  • 1.5.3 environment.yml

Size: 16.5 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

houchenst/FastNeRF
  • environment.yml

Size: 57.6 MB - Last synced: 9 months ago - Pushed: over 2 years ago

villegar/DoGE
Differential Gene Expression Analysis Pipeline
  • 1.1.* environment.yml

Size: 16 MB - Last synced: 10 months ago - Pushed: almost 3 years ago

iuni-cadre/WoS-disambiguation
Project to compare and develop disambiguation solutions for Web fo Science and beyond
  • 1.2.3 environment.yml

Size: 2.74 MB - Last synced: 29 days ago - Pushed: about 3 years ago

OSU-BMBL/PGRP-Grape-Grafting
Adapting Perennial Crops for Climate Change: Graft Transmissible Effects of Rootstocks on Grapevine Shoots
  • 1.2.3 environment.yml

Size: 2.22 MB - Last synced: 9 days ago - Pushed: about 3 years ago

CarolinaPB/polish-assembly-shortreads
Polish assembly with short reads
  • 1.2.3 environment.yml

Size: 35.2 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

nygctech/hudson
Pyseq 4i spatial pipeline
  • 1.5.3 environment.yaml

Size: 235 MB - Last synced: 15 days ago - Pushed: 15 days ago

EthanHolleman/GLOE-reps
Attempting to answer the question, how similar are biological replicates in GLOE-seq publication.
  • 1.4 environment.yml

Size: 3.71 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

phylo42/PEWO
Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees
  • 1.0 envs/environment.yaml

Size: 7.82 MB - Last synced: 3 months ago - Pushed: 8 months ago

mitoNGS/MToolBox_snakemake
MToolBox pipeline written in snakemake to allow a better scalability
  • 0.13.0.* envs/environment.yaml

Size: 2.17 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

manutamminen/epicpcr_6
  • 1.5.3 env/environment.yml

Size: 8.84 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

marshrossney/percolation
A "computer experiment" for first-year UG labs, loosely based on pandemic modelling
  • 1.2.3 environment.yml

Size: 42.9 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

kelly-sovacool/meta-repo
A meta-repository to organize my public projects.
  • 0.13.0 config/environment.yml

Size: 33.2 MB - Last synced: 9 months ago - Pushed: 9 months ago

yangmqglobe/dapipe
自动化的 ATAC-Seq 分析流程
  • 1.4.* environment.yml

Size: 193 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

TTTPOB/fastq-downloader
download fastq from gsm or srx accession, rename, combine, in one click
  • 1.5.3 environment.yaml

Size: 93.8 KB - Last synced: 26 days ago - Pushed: almost 2 years ago

Dylkln/LAGOON
  • 1.5.3 environment.yml

Size: 181 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

kaistcbfg/scAVENGERS
  • 1.5.3 envs/environment.yml

Size: 67.5 MB - Last synced: 5 months ago - Pushed: 10 months ago

alexanderbergman7/metanlrpp
Official Implementation for Fast Training of Neural Lumigraph Representations using Meta Learning.
  • 1.3 environment.yml

Size: 12.6 MB - Last synced: 11 months ago - Pushed: over 1 year ago

durrantmm/mustache
A flexible tool to identify mobile genetic elements and their sites of insertions from short-read whole-genome sequencing data.
  • 0.13.0 envs/environment.yml

Size: 69.8 MB - Last synced: 3 days ago - Pushed: almost 5 years ago

tangibleai/community/qary-cli
Command Line Interface for developers of qary -- the open source, teachable AI assistant that truly assists, rather than manipulating you.
  • 1.5.3.* scripts/environment.yml

Last synced: 12 days ago

russHyde/code_as_data
Analysis of code in R dev packages (for a planned talk)
  • 1.4.* conda/environment.yml

Size: 295 KB - Last synced: 3 months ago - Pushed: 7 months ago

candacelax/bias-in-vision-and-language
Code for paper "Measuring Social Biases in Grounded Vision and Language Embeddings"
  • 0.14.0 environment.yml

Size: 11.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

prosocialai/nlpia2
Code and data for _Natural Language Processing in Action_, 2nd Edition, by Maria Dyshel and Hobson Lane
  • 1.5.3.* environment.yml

Last synced: about 1 year ago

greenelab/2022-cf-sputum
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways
  • 1.5.3 environment.yml

Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago

letaylor/snakemake-qtl
Snakemake pipeline for molecular trait QTL mapping
  • 0.12.0 environment.yml

Size: 18.2 MB - Last synced: about 1 year ago - Pushed: over 4 years ago

kirbyvisp/marmo
MARMO is a Modular and Robust pipeline for iMmune single-cell multi-Omics implemented in Snakemake.
  • 0.12.0 environment.yaml

Size: 2.86 MB - Last synced: over 1 year ago

rwanwork/sam2irs
sam2irs is a program for calculating intron retention scores (IRS') using input in the sequence alignment/map (SAM) format.
  • 0.13.0 environment.yml

Size: 155 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow
  • 1.5.3 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

shubham-goel/ds
Code for Differentiable Stereopsis. Goel, Gkioxari, Malik 2021
  • 1.5.3 environment.yaml

Size: 6.42 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

scilifelab-lts/b_henriques-normark_1606
  • 0.13.0 bianca-env/environment.yml
  • 0.13.0 envs/environment.yaml

Size: 30.6 MB - Last synced: over 1 year ago

dvirmarsh/H-D-project
  • nerf-master/environment.yml

Size: 3.07 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago

jvguinelli/WeatherPrediction
  • environment.yml

Size: 76.2 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

gonzalosm98/scRNA-SeqAnalysis
  • 1.2.3 environment.yml

Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

tangibleai/nessvec
  • 1.5.3.* environment.yml
  • 1.5.3.* scripts/environment.yml

Last synced: 13 days ago

Pinjontall94/abed
  • 1.2.3 environment.yaml

Last synced: over 1 year ago

CirceMcD/snakemake_azure
  • environment.yml

Size: 66.4 MB - Last synced: over 1 year ago

dala85/qary-api
DRF for Qary bot
  • 1.2.2 qary/environment.yml

Last synced: over 1 year ago

jana_ebler/genotyping-experiments
  • 0.13.0 env/environment.yml

Size: 22.7 MB - Last synced: over 1 year ago

jbloomlab/SARSr-CoV_homolog_survey
Survey of ACE2 binding specificities among SARS-related CoV homologs
  • 1.2.3 environment.yml

Size: 139 MB - Last synced: 10 months ago - Pushed: about 1 year ago

s-schmeier/docker-snakemake
  • environment.yml

Last synced: over 1 year ago

milothepsychic/rnaseq_pipeline
Snakemake RNAseq processing pipeline (STAR or Salmon) via a SLURM cluster
  • 0.13.0 environment.yml

Last synced: over 1 year ago

spietras/studia
University projects 🎓
  • 1.2.3 bachelor/7/ALHE/antcolony/environment.yml

Size: 47.2 MB - Last synced: 27 days ago - Pushed: 10 months ago

mstolarczyk/master_thesis
Master thesis "L-SAARs evolution in tetrapods"
  • snakemake/snakemake_dir/environment.yml

Last synced: over 1 year ago

babelomics/impuSARS
Software tool for the imputation of whole-genome SARS-CoV-2 sequences.
  • 1.5.3.* conda/environment.yml

Size: 85.2 MB - Last synced: 9 months ago - Pushed: over 1 year ago

junxuan-li/Neural-Reflectance-PS
Code of the CVPR 2022 paper: Neural Reflectance for Shape Recovery with Shadow Handling
  • environment.yml

Size: 34.3 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

dala85/qary
  • environment.yml

Size: 98.6 MB - Last synced: 11 months ago - Pushed: over 1 year ago

dieterich-lab/ImmunOMICS
  • 1.5.3 environment.yml

Size: 27.6 MB - Last synced: 2 months ago - Pushed: about 1 year ago

beepbeepbebe/nerf_original Fork of bmild/nerf
Code release for NeRF (Neural Radiance Fields)
  • environment.yml

Size: 3.81 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

AndrewAtanov/simclr-pytorch
PyTorch implementation of SimCLR: supports multi-GPU training and closely reproduces results
  • 1.2.3 environment.yml

Size: 1.75 MB - Last synced: 6 months ago - Pushed: 11 months ago

fieldima/adequacy_of_PCMs Fork of phylo-lab-usc/fiels_workbench
This repository contains all the scripts for analyzing the adequacy of the most commonly used phylogenetic comparative models for gene expression datasets.
  • 1.5.3 Normalization_Reanalysis/environment.yml

Size: 350 MB - Last synced: 11 months ago - Pushed: over 1 year ago

ml4ai/automates
AutoMATES: Automated Model Assembly from Text, Equations, and Software
  • 0.14.0 automates/equation_reading/equation_translation/eqdec/environment.yml

Size: 281 MB - Last synced: 8 months ago - Pushed: 8 months ago

jbloomlab/barcoded_flu_pdmH1N1
Barcoded pdmH1N1 virus hashing experiment
  • 1.2.3 environment.yml

Size: 642 MB - Last synced: 4 months ago - Pushed: 10 months ago

gagneurlab/transmicron
  • 1.5.3.* environment.yml

Size: 16.7 MB - Last synced: 6 days ago - Pushed: over 1 year ago

samwitham/PromoterArchitecture
Arabidopsis thaliana promoter architecture analysis pipeline
  • 1.2.3 environment.yml

Size: 187 MB - Last synced: 7 months ago - Pushed: 9 months ago

vsitzmann/siren
Official implementation of "Implicit Neural Representations with Periodic Activation Functions"
  • 1.1 environment.yml

Size: 2.13 MB - Last synced: 6 months ago - Pushed: over 1 year ago

GATECH-EIC/ViTCoD
[HPCA 2023] ViTCoD: Vision Transformer Acceleration via Dedicated Algorithm and Accelerator Co-Design
  • 1.4 Algorithm/deit/environment.yml

Size: 13.9 MB - Last synced: 27 days ago - Pushed: 11 months ago

google/samurai 📦
SAMURAI: Shape And Material from Unconstrained Real-world Arbitrary Image collections - NeurIPS2022
  • environment.yml

Size: 10.1 MB - Last synced: 6 days ago - Pushed: about 1 year ago

christophfink/r5py Fork of r5py/r5py
A Python wrapper for the R5 routing analysis engine (https://github.com/conveyal/r5). Inspired by r5r, a wrapper for R (https://ipeagit.github.io/r5r/)
  • 1.7.* .binder/environment.yml

Size: 39.5 MB - Last synced: 29 days ago - Pushed: 3 months ago

mjaquiery/genetics-snakemake
Snakemake workflow for handling PRS scores and relatedness calculations for human genetic data from ALSPAC.
  • 1.5.3 workflow/envs/environment.yaml

Size: 1.44 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

paezha/PyERT-BLACK
Capstone project for course 4G06
  • 1.5.3 environment.yml

Size: 23.2 MB - Last synced: 11 days ago - Pushed: about 1 year ago

rafalbachorz/pyscreener_old
  • environment.yml

Size: 774 KB - Last synced: 9 months ago - Pushed: over 2 years ago

frankhome61/nerf
  • environment.yml

Size: 7.72 MB - Last synced: 9 months ago - Pushed: over 2 years ago

gw-odw/odw-2018
Software for Open Data Workshop 2018
  • 0.13.0 environment.yml

Size: 23 MB - Last synced: 24 days ago - Pushed: over 4 years ago

neavemj/mappd
Metagenomic Analysis Pipeline for Pathogen Discovery
  • 0.14.0 environment.yaml

Size: 924 KB - Last synced: 8 months ago - Pushed: 8 months ago

bioxfu/ITIS2
python version of ITIS
  • 0.12.0 doc/environment.yml

Size: 13.7 KB - Last synced: 10 months ago - Pushed: over 6 years ago

russHyde/bfx_201909
Statistical Bioinformatics presentation
  • 0.13.0.* envs/environment.yml

Size: 327 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

skurscheid/snakemake
  • environment.yml

Size: 66.7 MB - Last synced: 10 months ago - Pushed: over 4 years ago

gw-odw/odw-2020
Software tutorials for GW Open Data Workshop #3
  • 1.2.3 environment.yml

Size: 20.4 MB - Last synced: about 1 month ago - Pushed: over 3 years ago

mestill7/RepCounter
RepCounter provides a lightweight, modular program for estimating the relative abundance of repeat families and classes in a next-generation sequencing project.
  • 1.5.3 environment.yaml

Size: 15.1 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

bioxfu/TSDfinder
  • 0.12.0 doc/environment.yml

Size: 14.6 KB - Last synced: 7 months ago - Pushed: over 6 years ago

mestill7/HiC-fast
HiC processing pipeline for fast alignment
  • 1.5.3 environment.yaml

Size: 32.2 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago

mestill7/HIV_Chimfinder
  • 1.2.3 environment.yaml

Size: 76.2 KB - Last synced: about 2 months ago - Pushed: over 3 years ago

mestill7/Snake-RNA
Pipeline for summarizing expression data for batches of public RNA-seq datasets
  • 1.2.3 environment.yaml

Size: 128 KB - Last synced: about 2 months ago - Pushed: over 3 years ago

m-dml/emulator_L96
  • environment.yml

Size: 965 KB - Last synced: about 1 year ago - Pushed: about 3 years ago

manutamminen/epicpcr_7
  • 1.5.3 env/environment.yml

Size: 2.98 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

Daraniel1000/ALHE-ACO-india35
  • 1.2.3 environment.yml

Size: 1.59 MB - Last synced: 27 days ago - Pushed: over 3 years ago

EthanHolleman/298lab10
201B Lab
  • 1.3 environment.yml

Size: 4.88 KB - Last synced: about 1 year ago - Pushed: about 3 years ago

EthanHolleman/GLOE-loops
Exploration of human GLOE-seq data and looking for possible connections to Rloop formation
  • 1.3 environment.yml

Size: 2.9 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

phylo-lab-usc/fiels_workbench
  • 1.5.3 Mammal_organs/gene_family_phylogenies/environment.yml

Size: 312 MB - Last synced: 11 months ago - Pushed: almost 2 years ago

James-S-Santangelo/glue_dnaSeqQC
  • 1.2.3 environment.yaml

Size: 9.51 MB - Last synced: 9 months ago - Pushed: about 1 year ago

bfairkun/Comparative_eQTL
Primary data: Chimp eQTLs called from heart tissue samples
  • 0.13.0 code/snakemake_workflow/envs/environment.yml

Size: 583 MB - Last synced: 9 months ago - Pushed: over 3 years ago

wx-b/LIFE
Code for "LIFE: Lighting Invariant Flow Estimation"
  • 1.5.* environment.yaml

Size: 42.2 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

lyclyc52/ONeRF
  • environment.yml

Size: 350 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

yangmqglobe/depipe
自动化的 ChIP-Seq 分析流程
  • 1.4.1.* environment.yml

Size: 16.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

sailing-innocent/cent
  • reimpls/vanilla_nerf/environment.yml

Size: 15.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

zia-foisal/reproducible_drought_index
A repository to practice reproducible research practices while studing the state of the drought around the world
  • 1.5.3 environment.yaml

Size: 10.7 KB - Last synced: 12 months ago - Pushed: over 1 year ago

tangibleai/nlpia2-old
Code and data for _Natural Language Processing in Action_, 2nd Edition, by Maria Dyshel and Hobson Lane for Manning Publications
  • 1.5.3.* environment.yml
  • 1.5.3.* scripts/environment.yml

Last synced: 9 months ago

qbicsoftware/r-container-lib
A collection of project-related Dockerfiles for a controlled R environment with defined R packages
  • 0.13.0 projects/QTEST/environment.yml

Size: 150 KB - Last synced: 2 days ago - Pushed: about 3 years ago

tlabsim/nerf-lighting
Lighting in NeRF
  • environment.yml

Size: 15.1 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

lambda-science/droso-analysis
https://github.com/Harajuku7/stage-thompson but with drosophilia
  • 1.0 environment.yml

Size: 986 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago

lambda-science/stage-thompson
Stage de fin d'étude dans l'équipe de Julie D. Thomspon @ CSTB - iCube
  • 1.0 environment.yml

Size: 1.05 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

aneekroy/nerf-deep-dive-testbench
Code repository for nerf testbench
  • nerf/environment.yml

Size: 21.6 MB - Last synced: 12 months ago - Pushed: 12 months ago

MasterOnDust/Master_thesis_UiO_workflow
Snakemake workflow for processing FLEXPART and FLEXDUST model output and doing analysis related to my thesis
  • 1.2.3.* environment.yml

Size: 24.1 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

BradhamLab/indrops-star
Pipeline to analyze Indrops V3 data using STARsolo
  • 1.0 environment.yaml

Size: 529 KB - Last synced: 7 months ago - Pushed: 11 months ago