Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: conda: configargparse
5 versions
Latest release: about 3 years ago
1 dependent package
View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/configargparse
View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/bw2%2FConfigArgParse
Dependent Repos 70
ZhenyanLuo/FindPlantNLRs
- 1.5.3 environment.yml
Size: 361 KB - Last synced: 4 months ago - Pushed: 4 months ago
nlpia/nlpia-bot
A virtual assistant that actually assists!- 1.2.2 environment.yml
Size: 21.3 MB - Last synced: about 14 hours ago - Pushed: over 1 year ago
casrssk/WGS-analysis-in-C_trachomatis
- 1.1 mac/samples/envs/environment.yml
Size: 7.39 MB - Last synced: 4 months ago - Pushed: about 2 years ago
kristen-schneider/genotype-encoding
- 1.5.3 environment.yml
Size: 16.5 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
houchenst/FastNeRF
- environment.yml
Size: 57.6 MB - Last synced: 9 months ago - Pushed: over 2 years ago
villegar/DoGE
Differential Gene Expression Analysis Pipeline- 1.1.* environment.yml
Size: 16 MB - Last synced: 10 months ago - Pushed: almost 3 years ago
iuni-cadre/WoS-disambiguation
Project to compare and develop disambiguation solutions for Web fo Science and beyond- 1.2.3 environment.yml
Size: 2.74 MB - Last synced: 29 days ago - Pushed: about 3 years ago
OSU-BMBL/PGRP-Grape-Grafting
Adapting Perennial Crops for Climate Change: Graft Transmissible Effects of Rootstocks on Grapevine Shoots- 1.2.3 environment.yml
Size: 2.22 MB - Last synced: 9 days ago - Pushed: about 3 years ago
CarolinaPB/polish-assembly-shortreads
Polish assembly with short reads- 1.2.3 environment.yml
Size: 35.2 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
nygctech/hudson
Pyseq 4i spatial pipeline- 1.5.3 environment.yaml
Size: 235 MB - Last synced: 15 days ago - Pushed: 15 days ago
EthanHolleman/GLOE-reps
Attempting to answer the question, how similar are biological replicates in GLOE-seq publication.- 1.4 environment.yml
Size: 3.71 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
phylo42/PEWO
Phylogenetic Placement Evaluation Workflows : Benchmark placement software and different reference trees- 1.0 envs/environment.yaml
Size: 7.82 MB - Last synced: 3 months ago - Pushed: 8 months ago
mitoNGS/MToolBox_snakemake
MToolBox pipeline written in snakemake to allow a better scalability- 0.13.0.* envs/environment.yaml
Size: 2.17 MB - Last synced: about 1 year ago - Pushed: about 2 years ago
manutamminen/epicpcr_6
- 1.5.3 env/environment.yml
Size: 8.84 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
marshrossney/percolation
A "computer experiment" for first-year UG labs, loosely based on pandemic modelling- 1.2.3 environment.yml
Size: 42.9 MB - Last synced: about 1 year ago - Pushed: about 2 years ago
kelly-sovacool/meta-repo
A meta-repository to organize my public projects.- 0.13.0 config/environment.yml
Size: 33.2 MB - Last synced: 9 months ago - Pushed: 9 months ago
yangmqglobe/dapipe
自动化的 ATAC-Seq 分析流程- 1.4.* environment.yml
Size: 193 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
TTTPOB/fastq-downloader
download fastq from gsm or srx accession, rename, combine, in one click- 1.5.3 environment.yaml
Size: 93.8 KB - Last synced: 26 days ago - Pushed: almost 2 years ago
Dylkln/LAGOON
- 1.5.3 environment.yml
Size: 181 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
kaistcbfg/scAVENGERS
- 1.5.3 envs/environment.yml
Size: 67.5 MB - Last synced: 5 months ago - Pushed: 10 months ago
alexanderbergman7/metanlrpp
Official Implementation for Fast Training of Neural Lumigraph Representations using Meta Learning.- 1.3 environment.yml
Size: 12.6 MB - Last synced: 11 months ago - Pushed: over 1 year ago
durrantmm/mustache
A flexible tool to identify mobile genetic elements and their sites of insertions from short-read whole-genome sequencing data.- 0.13.0 envs/environment.yml
Size: 69.8 MB - Last synced: 3 days ago - Pushed: almost 5 years ago
tangibleai/community/qary-cli
Command Line Interface for developers of qary -- the open source, teachable AI assistant that truly assists, rather than manipulating you.- 1.5.3.* scripts/environment.yml
Last synced: 12 days ago
russHyde/code_as_data
Analysis of code in R dev packages (for a planned talk)- 1.4.* conda/environment.yml
Size: 295 KB - Last synced: 3 months ago - Pushed: 7 months ago
candacelax/bias-in-vision-and-language
Code for paper "Measuring Social Biases in Grounded Vision and Language Embeddings"- 0.14.0 environment.yml
Size: 11.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
prosocialai/nlpia2
Code and data for _Natural Language Processing in Action_, 2nd Edition, by Maria Dyshel and Hobson Lane- 1.5.3.* environment.yml
Last synced: about 1 year ago
greenelab/2022-cf-sputum
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways- 1.5.3 environment.yml
Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago
letaylor/snakemake-qtl
Snakemake pipeline for molecular trait QTL mapping- 0.12.0 environment.yml
Size: 18.2 MB - Last synced: about 1 year ago - Pushed: over 4 years ago
kirbyvisp/marmo
MARMO is a Modular and Robust pipeline for iMmune single-cell multi-Omics implemented in Snakemake.- 0.12.0 environment.yaml
Size: 2.86 MB - Last synced: over 1 year ago
rwanwork/sam2irs
sam2irs is a program for calculating intron retention scores (IRS') using input in the sequence alignment/map (SAM) format.- 0.13.0 environment.yml
Size: 155 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow- 1.5.3 environment.yml
Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
shubham-goel/ds
Code for Differentiable Stereopsis. Goel, Gkioxari, Malik 2021- 1.5.3 environment.yaml
Size: 6.42 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
scilifelab-lts/b_henriques-normark_1606
- 0.13.0 bianca-env/environment.yml
- 0.13.0 envs/environment.yaml
Size: 30.6 MB - Last synced: over 1 year ago
dvirmarsh/H-D-project
- nerf-master/environment.yml
Size: 3.07 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago
jvguinelli/WeatherPrediction
- environment.yml
Size: 76.2 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
gonzalosm98/scRNA-SeqAnalysis
- 1.2.3 environment.yml
Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
jana_ebler/genotyping-experiments
- 0.13.0 env/environment.yml
Size: 22.7 MB - Last synced: over 1 year ago
jbloomlab/SARSr-CoV_homolog_survey
Survey of ACE2 binding specificities among SARS-related CoV homologs- 1.2.3 environment.yml
Size: 139 MB - Last synced: 10 months ago - Pushed: about 1 year ago
milothepsychic/rnaseq_pipeline
Snakemake RNAseq processing pipeline (STAR or Salmon) via a SLURM cluster- 0.13.0 environment.yml
Last synced: over 1 year ago
spietras/studia
University projects 🎓- 1.2.3 bachelor/7/ALHE/antcolony/environment.yml
Size: 47.2 MB - Last synced: 27 days ago - Pushed: 10 months ago
mstolarczyk/master_thesis
Master thesis "L-SAARs evolution in tetrapods"- snakemake/snakemake_dir/environment.yml
Last synced: over 1 year ago
babelomics/impuSARS
Software tool for the imputation of whole-genome SARS-CoV-2 sequences.- 1.5.3.* conda/environment.yml
Size: 85.2 MB - Last synced: 9 months ago - Pushed: over 1 year ago
junxuan-li/Neural-Reflectance-PS
Code of the CVPR 2022 paper: Neural Reflectance for Shape Recovery with Shadow Handling- environment.yml
Size: 34.3 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
dieterich-lab/ImmunOMICS
- 1.5.3 environment.yml
Size: 27.6 MB - Last synced: 2 months ago - Pushed: about 1 year ago
beepbeepbebe/nerf_original Fork of bmild/nerf
Code release for NeRF (Neural Radiance Fields)- environment.yml
Size: 3.81 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
AndrewAtanov/simclr-pytorch
PyTorch implementation of SimCLR: supports multi-GPU training and closely reproduces results- 1.2.3 environment.yml
Size: 1.75 MB - Last synced: 6 months ago - Pushed: 11 months ago
fieldima/adequacy_of_PCMs Fork of phylo-lab-usc/fiels_workbench
This repository contains all the scripts for analyzing the adequacy of the most commonly used phylogenetic comparative models for gene expression datasets.- 1.5.3 Normalization_Reanalysis/environment.yml
Size: 350 MB - Last synced: 11 months ago - Pushed: over 1 year ago
ml4ai/automates
AutoMATES: Automated Model Assembly from Text, Equations, and Software- 0.14.0 automates/equation_reading/equation_translation/eqdec/environment.yml
Size: 281 MB - Last synced: 8 months ago - Pushed: 8 months ago
jbloomlab/barcoded_flu_pdmH1N1
Barcoded pdmH1N1 virus hashing experiment- 1.2.3 environment.yml
Size: 642 MB - Last synced: 4 months ago - Pushed: 10 months ago
gagneurlab/transmicron
- 1.5.3.* environment.yml
Size: 16.7 MB - Last synced: 6 days ago - Pushed: over 1 year ago
samwitham/PromoterArchitecture
Arabidopsis thaliana promoter architecture analysis pipeline- 1.2.3 environment.yml
Size: 187 MB - Last synced: 7 months ago - Pushed: 9 months ago
vsitzmann/siren
Official implementation of "Implicit Neural Representations with Periodic Activation Functions"- 1.1 environment.yml
Size: 2.13 MB - Last synced: 6 months ago - Pushed: over 1 year ago
GATECH-EIC/ViTCoD
[HPCA 2023] ViTCoD: Vision Transformer Acceleration via Dedicated Algorithm and Accelerator Co-Design- 1.4 Algorithm/deit/environment.yml
Size: 13.9 MB - Last synced: 27 days ago - Pushed: 11 months ago
google/samurai 📦
SAMURAI: Shape And Material from Unconstrained Real-world Arbitrary Image collections - NeurIPS2022- environment.yml
Size: 10.1 MB - Last synced: 6 days ago - Pushed: about 1 year ago
christophfink/r5py Fork of r5py/r5py
A Python wrapper for the R5 routing analysis engine (https://github.com/conveyal/r5). Inspired by r5r, a wrapper for R (https://ipeagit.github.io/r5r/)- 1.7.* .binder/environment.yml
Size: 39.5 MB - Last synced: 29 days ago - Pushed: 3 months ago
mjaquiery/genetics-snakemake
Snakemake workflow for handling PRS scores and relatedness calculations for human genetic data from ALSPAC.- 1.5.3 workflow/envs/environment.yaml
Size: 1.44 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
paezha/PyERT-BLACK
Capstone project for course 4G06- 1.5.3 environment.yml
Size: 23.2 MB - Last synced: 11 days ago - Pushed: about 1 year ago
rafalbachorz/pyscreener_old
- environment.yml
Size: 774 KB - Last synced: 9 months ago - Pushed: over 2 years ago
frankhome61/nerf
- environment.yml
Size: 7.72 MB - Last synced: 9 months ago - Pushed: over 2 years ago
gw-odw/odw-2018
Software for Open Data Workshop 2018- 0.13.0 environment.yml
Size: 23 MB - Last synced: 24 days ago - Pushed: over 4 years ago
neavemj/mappd
Metagenomic Analysis Pipeline for Pathogen Discovery- 0.14.0 environment.yaml
Size: 924 KB - Last synced: 8 months ago - Pushed: 8 months ago
bioxfu/ITIS2
python version of ITIS- 0.12.0 doc/environment.yml
Size: 13.7 KB - Last synced: 10 months ago - Pushed: over 6 years ago
russHyde/bfx_201909
Statistical Bioinformatics presentation- 0.13.0.* envs/environment.yml
Size: 327 KB - Last synced: about 1 year ago - Pushed: over 4 years ago
skurscheid/snakemake
- environment.yml
Size: 66.7 MB - Last synced: 10 months ago - Pushed: over 4 years ago
gw-odw/odw-2020
Software tutorials for GW Open Data Workshop #3- 1.2.3 environment.yml
Size: 20.4 MB - Last synced: about 1 month ago - Pushed: over 3 years ago
mestill7/RepCounter
RepCounter provides a lightweight, modular program for estimating the relative abundance of repeat families and classes in a next-generation sequencing project.- 1.5.3 environment.yaml
Size: 15.1 MB - Last synced: about 2 months ago - Pushed: over 1 year ago
bioxfu/TSDfinder
- 0.12.0 doc/environment.yml
Size: 14.6 KB - Last synced: 7 months ago - Pushed: over 6 years ago
mestill7/HiC-fast
HiC processing pipeline for fast alignment- 1.5.3 environment.yaml
Size: 32.2 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago
mestill7/HIV_Chimfinder
- 1.2.3 environment.yaml
Size: 76.2 KB - Last synced: about 2 months ago - Pushed: over 3 years ago
mestill7/Snake-RNA
Pipeline for summarizing expression data for batches of public RNA-seq datasets- 1.2.3 environment.yaml
Size: 128 KB - Last synced: about 2 months ago - Pushed: over 3 years ago
m-dml/emulator_L96
- environment.yml
Size: 965 KB - Last synced: about 1 year ago - Pushed: about 3 years ago
manutamminen/epicpcr_7
- 1.5.3 env/environment.yml
Size: 2.98 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
Daraniel1000/ALHE-ACO-india35
- 1.2.3 environment.yml
Size: 1.59 MB - Last synced: 27 days ago - Pushed: over 3 years ago
EthanHolleman/298lab10
201B Lab- 1.3 environment.yml
Size: 4.88 KB - Last synced: about 1 year ago - Pushed: about 3 years ago
EthanHolleman/GLOE-loops
Exploration of human GLOE-seq data and looking for possible connections to Rloop formation- 1.3 environment.yml
Size: 2.9 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
phylo-lab-usc/fiels_workbench
- 1.5.3 Mammal_organs/gene_family_phylogenies/environment.yml
Size: 312 MB - Last synced: 11 months ago - Pushed: almost 2 years ago
James-S-Santangelo/glue_dnaSeqQC
- 1.2.3 environment.yaml
Size: 9.51 MB - Last synced: 9 months ago - Pushed: about 1 year ago
bfairkun/Comparative_eQTL
Primary data: Chimp eQTLs called from heart tissue samples- 0.13.0 code/snakemake_workflow/envs/environment.yml
Size: 583 MB - Last synced: 9 months ago - Pushed: over 3 years ago
wx-b/LIFE
Code for "LIFE: Lighting Invariant Flow Estimation"- 1.5.* environment.yaml
Size: 42.2 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
lyclyc52/ONeRF
- environment.yml
Size: 350 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
yangmqglobe/depipe
自动化的 ChIP-Seq 分析流程- 1.4.1.* environment.yml
Size: 16.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
sailing-innocent/cent
- reimpls/vanilla_nerf/environment.yml
Size: 15.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
zia-foisal/reproducible_drought_index
A repository to practice reproducible research practices while studing the state of the drought around the world- 1.5.3 environment.yaml
Size: 10.7 KB - Last synced: 12 months ago - Pushed: over 1 year ago
tangibleai/nlpia2-old
Code and data for _Natural Language Processing in Action_, 2nd Edition, by Maria Dyshel and Hobson Lane for Manning Publications- 1.5.3.* environment.yml
- 1.5.3.* scripts/environment.yml
Last synced: 9 months ago
qbicsoftware/r-container-lib
A collection of project-related Dockerfiles for a controlled R environment with defined R packages- 0.13.0 projects/QTEST/environment.yml
Size: 150 KB - Last synced: 2 days ago - Pushed: about 3 years ago
tlabsim/nerf-lighting
Lighting in NeRF- environment.yml
Size: 15.1 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
lambda-science/droso-analysis
https://github.com/Harajuku7/stage-thompson but with drosophilia- 1.0 environment.yml
Size: 986 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago
lambda-science/stage-thompson
Stage de fin d'étude dans l'équipe de Julie D. Thomspon @ CSTB - iCube- 1.0 environment.yml
Size: 1.05 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
aneekroy/nerf-deep-dive-testbench
Code repository for nerf testbench- nerf/environment.yml
Size: 21.6 MB - Last synced: 12 months ago - Pushed: 12 months ago
MasterOnDust/Master_thesis_UiO_workflow
Snakemake workflow for processing FLEXPART and FLEXDUST model output and doing analysis related to my thesis- 1.2.3.* environment.yml
Size: 24.1 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
BradhamLab/indrops-star
Pipeline to analyze Indrops V3 data using STARsolo- 1.0 environment.yaml
Size: 529 KB - Last synced: 7 months ago - Pushed: 11 months ago