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GitHub / BradhamLab / indrops-star
Pipeline to analyze Indrops V3 data using STARsolo
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/BradhamLab%2Findrops-star
Stars: 1
Forks: 0
Open Issues: 1
License: bsd-3-clause
Language: Python
Repo Size: 529 KB
Dependencies:
112
Created: over 4 years ago
Updated: 7 months ago
Last pushed: 12 months ago
Last synced: 7 months ago
Topics: alignment, indrops, single-cell-analysis, single-cell-genomics, single-cell-rna-seq, star
Files
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Readme
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Dependencies
environment.yaml
conda
- _libgcc_mutex 0.1
- _openmp_mutex 4.5
- appdirs 1.4.3
- attrs 19.3.0
- bcl2fastq 2.19.0
- biopython 1.76
- boost_lib 1.54.0
- ca-certificates 2020.12.5
- certifi 2020.12.5
- cffi 1.13.2
- chardet 3.0.4
- configargparse 1.0
- cryptography 2.8
- cutadapt 3.3
- cycler 0.10.0
- datrie 0.8
- dbus 1.13.6
- decorator 4.4.1
- dnaio 0.5.0
- docutils 0.16
- expat 2.2.9
- fastq-pair 1.0
- fontconfig 2.13.1
- freetype 2.10.0
- gettext 0.19.8.1
- gitdb2 3.0.2
- gitpython 3.0.5
- glib 2.58.3
- gst-plugins-base 1.14.5
- gstreamer 1.14.5
- icu 64.2
- idna 2.8
- importlib_metadata 1.5.0
- ipython_genutils 0.2.0
- isa-l 2.30.0
- jpeg 9c
- jsonschema 3.2.0
- jupyter_core 4.6.2
- kiwisolver 1.1.0
- ld_impl_linux-64 2.33.1
- libblas 3.8.0
- libcblas 3.8.0
- libclang 9.0.1
- libffi 3.2.1
- libgcc 7.2.0
- libgcc-ng 9.3.0
- libgfortran-ng 7.3.0
- libgomp 9.3.0
- libiconv 1.15
- liblapack 3.8.0
- libllvm9 9.0.1
- libopenblas 0.3.7
- libpng 1.6.37
- libstdcxx-ng 9.3.0
- libuuid 2.32.1
- libxcb 1.13
- libxkbcommon 0.10.0
- libxml2 2.9.10
- matplotlib 3.1.3
- matplotlib-base 3.1.3
- nbformat 5.0.4
- ncurses 6.1
- nspr 4.25
- nss 3.47
- numpy 1.18.1
- openssl 1.1.1k
- pandas 1.0.1
- patsy 0.5.1
- pcre 8.44
- pigz 2.3.4
- pip 20.0.2
- psutil 5.6.7
- pthread-stubs 0.4
- pycparser 2.19
- pyopenssl 19.1.0
- pyparsing 2.4.6
- pyqt 5.12.3
- pyrsistent 0.15.7
- pysocks 1.7.1
- python 3.7.6
- python-dateutil 2.8.1
- python-isal 0.8.0
- python_abi 3.7
- pytz 2019.3
- pyyaml 5.3
- qt 5.12.5
- ratelimiter 1.2.0
- readline 8.0
- requests 2.22.0
- scipy 1.4.1
- seaborn 0.10.0
- setuptools 45.2.0
- six 1.14.0
- smmap2 2.0.5
- snakemake-minimal 5.10.0
- sqlite 3.30.1
- star 2.7.8a
- statsmodels 0.11.0
- tk 8.6.10
- toposort 1.5
- tornado 6.0.3
- traitlets 4.3.3
- urllib3 1.25.7
- wheel 0.34.2
- wrapt 1.12.0
- xopen 1.1.0
- xorg-libxau 1.0.9
- xorg-libxdmcp 1.1.3
- xz 5.2.4
- yaml 0.2.2
- zipp 2.2.0
- zlib 1.2.11