Ecosyste.ms: Repos
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Package Usage: conda: vcftools
View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/vcftools
Dependent Repos 38
GCJMackenzie/sarek Fork of nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing- 0.1.16 environment.yml
Size: 16.4 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
JetBrains-Research/snakecharm
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.- 0.1.16 testData/wrappers_storage/bio/vcftools/filter/environment.yaml
Size: 2.93 MB - Last synced: 5 days ago - Pushed: 6 days ago
ccmbioinfo/crg2
Research pipeline for exploring clinically relevant genomic variants- 0.1.16 wrappers/vcftools/filter/environment.yaml
Size: 4.48 MB - Last synced: 19 days ago - Pushed: 19 days ago
lb83/subset_WES_AggV2
- environment.yml
Size: 59.6 KB - Last synced: 12 months ago - Pushed: over 1 year ago
Clinical-Genomics-Lund/SomaticPanelPipeline
- 0.1.16.* container/environment.yml
Size: 5.29 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
luisacusick/VC-Optimus
Bioinformatics pipeline to take short reads, align them to a reference, and call SNPs.- 0.1.16 environment.yml
Size: 138 KB - Last synced: about 1 year ago - Pushed: about 3 years ago
Clinical-Genomics-Lund/nextflow_myeloid
Nextflow pipeline for analysis of the twist myeloid panel- 0.1.16.* container/environment.yml
Size: 4.95 MB - Last synced: 8 months ago - Pushed: about 3 years ago
lifebit-ai/relate
Genomics Englands' Ancestry and Relatedness inference workflow- 0.1.15.* environment.yml
Size: 718 KB - Last synced: about 1 month ago - Pushed: about 1 year ago
lifebit-ai/siteqc
Genomics England's workflow for variant annotation and quality control.- 0.1.15.* environment.yml
Size: 242 KB - Last synced: about 1 month ago - Pushed: over 3 years ago
lifebit-ai/annotate
- 0.1.15.* environment.yml
Size: 164 KB - Last synced: about 1 month ago - Pushed: over 3 years ago
eQTL-Catalogue/qcnorm
This pipeline will run QC measures of both genotype and phenotype data and will normalise quantified phenotypes- 0.1.16.* containers/genotype_qc/environment.yml
Size: 196 KB - Last synced: 4 months ago - Pushed: 4 months ago
fargenfo/linkseq-phase
- 0.1.* environment.yml
Size: 65.4 KB - Last synced: about 1 year ago - Pushed: over 2 years ago
h3abionet/chipimputation
Genotype Imputation Pipeline for H3Africa- 0.1.15.* environment.yml
Size: 232 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
jfnavarro/hla_pipeline
DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions- environment.yml
Size: 1.55 MB - Last synced: 7 months ago - Pushed: almost 3 years ago
snakemake/snakemake-wrappers
This repository contains wrapper scripts for fast integration of command line tools.- 0.1.16 bio/vcftools/filter/environment.yaml
Size: 13 MB - Last synced: over 1 year ago
kyleaoconnell22/RNA_seq_binder
- 0.1.16 environment.yaml
Size: 86.9 KB - Last synced: 6 months ago - Pushed: over 2 years ago
biominer-lab/omics-workflow-images
Docker images for omics workflow.- 0.1.15 consensus-call-anotate/environment.yml
Size: 33.8 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
omicsclass/biodocker
docker images for bioinformatics- 0.1.16.* pop-evol-gwas/environment.yml
- reseq/environment.yml
Size: 59.2 MB - Last synced: 12 months ago - Pushed: over 1 year ago
letaylor/snakemake-qtl
Snakemake pipeline for molecular trait QTL mapping- 0.1.15 environment.yml
Size: 18.2 MB - Last synced: about 1 year ago - Pushed: over 4 years ago
rtourdot/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing- 0.1.16 environment.yml
Last synced: over 1 year ago
saurabhbelsare/recombinationAnalysis
- LDHelmet_new/environment.yml
Size: 31.3 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
ryanlayerlab/layer_lab_chco
- 0.1.16.* container/environment.yml
Size: 5.88 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
jana_ebler/genotyping-experiments
- 0.1.16 env/environment.yml
Size: 22.7 MB - Last synced: over 1 year ago
cnrgh/LodSeq
LodSeq performs the genetic linkage analysis across families, by computing lod-scores given a gvcf file and a related tfam pedigree file- >=0.1.12 environment.yaml
Last synced: over 1 year ago
elarsonneur/LodSeq
LodSeq performs the genetic linkage analysis across families, by computing lod-scores given a gvcf file and a related tfam pedigree file- >=0.1.12 environment.yaml
Last synced: over 1 year ago
parklab/MosaicForecast
A mosaic detecting software based on phasing and random forest- environment.yaml
Size: 1.9 GB - Last synced: 2 months ago - Pushed: 9 months ago
uc-cdis/gen3-augur
Python CLI for data utils- environment.yml
Size: 15.3 MB - Last synced: 4 days ago - Pushed: 4 days ago
bailey-lab/MIPTools
A suite of computational tools used for molecular inversion probe design, data processing, and analysis.- environment.yml
Size: 270 MB - Last synced: 4 days ago - Pushed: 4 days ago
hivlab/sarscov2-epidemiology 📦
Visualisation of SARS-CoV-2 genomic epidemiology- environment.yml
Size: 119 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
davismcc/fibroblast-clonality
Website for the fibroblast clonality project conducted at EMBL-EBI and the Wellcome Sanger Institute ca 2017-2019.- 0.1.16.* environment.yml
Size: 94.8 MB - Last synced: about 1 year ago - Pushed: over 4 years ago
percyfal/snakemake-rules
Library of snakemake rules.- environment.yaml
Size: 3.85 MB - Last synced: about 1 year ago - Pushed: over 5 years ago
EpiDiverse/ewas
The EpiDiverse Epigenome-Wide Association Study Pipeline, implemented with Nextflow- 0.1.16.* env/environment.yml
Size: 20.9 MB - Last synced: 7 months ago - Pushed: about 1 year ago
IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020- 0.1.16 environment.yml
Size: 41.2 MB - Last synced: 10 months ago - Pushed: over 2 years ago
victor-moreno/ImputationTutorial
Tutorial on preparing SNP data for imputation using Binder- environment.yml
Size: 2.56 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
bioinformatics-lab/scratch
- 0.1.14 environment.yml
Size: 10.8 MB - Last synced: about 1 year ago - Pushed: about 6 years ago
bioinformatics-lab/BioDragon
- 0.1.14 environment.yml
Size: 10.9 MB - Last synced: about 1 year ago - Pushed: over 6 years ago
mbosio85/ngs_variant_calling
ngs_variant_calling- 0.1.16.* environment.yml
Size: 1.75 MB - Last synced: about 1 year ago - Pushed: over 4 years ago
mbosio85/nf-core-gatkcohortcall
WGS calling for cohorts following gatk guidelines- 0.1.16.* environment.yml
Size: 120 KB - Last synced: about 1 year ago - Pushed: over 4 years ago
GMS6804-master/Sarek
- 0.1.16.* environment.yml
Size: 43.4 MB - Last synced: 2 months ago - Pushed: almost 5 years ago
kelly-sovacool/tiger_salamander_project 📦
SNP pipeline using Snakemake for the Weisrock Lab's Tiger Salamander project.- config/environment.yml
Size: 96.7 MB - Last synced: 25 days ago - Pushed: over 4 years ago
bfairkun/Comparative_eQTL
Primary data: Chimp eQTLs called from heart tissue samples- 0.1.16 code/snakemake_workflow/envs/environment.yml
Size: 583 MB - Last synced: 10 months ago - Pushed: over 3 years ago
Oodnadatta/Hugodims-pipeline-2
- 0.1.14 environment.yml
Size: 3.91 KB - Last synced: 25 days ago - Pushed: over 7 years ago
nephantes/gatk4
- 0.1.16.* environment.yml
Size: 1.73 MB - Last synced: about 1 year ago - Pushed: about 2 years ago
Genomic-Medicine-Linkoping/nf-core-sarek
- 0.1.16 environment.yml
Size: 6.25 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago
rchapman2000/ont-ref-based-assembly
A reference-based assembly pipeline designed for analysis of Oxford Nanopore sequencing data- 0.1.16.* environment.yml
Size: 47.9 KB - Last synced: about 1 year ago - Pushed: about 1 year ago
arisp99/miptools-sandbox
A sandbox for testing MIPTools functions- environment.yml
Size: 8 MB - Last synced: about 1 year ago - Pushed: about 2 years ago
Jigyasa3/Mikheyevunit_t5phage
- environment.yml
Size: 105 MB - Last synced: 10 months ago - Pushed: almost 8 years ago
daewoooo/IntegrativePhasingPaper
Supplementary files for the study "Dense and accurate whole-chromosome haplotyping of individual genomes"- 0.1.14 environment.yml
Size: 7.65 MB - Last synced: 15 days ago - Pushed: over 6 years ago
sripaladugu/germline_somatic
- 0.1.16 environment.yml
Size: 5.09 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
nlm-irp-jianglab/bioinfo-wwbe
💧 Bioinformatic pipeline for wastewater-based epidemiology project- 0.1.16 environment.yml
Size: 620 KB - Last synced: 7 months ago - Pushed: about 1 year ago
olavurmortensen/linkedsim
- 0.1.16.* environment.yml
Size: 10.7 KB - Last synced: about 1 year ago - Pushed: about 4 years ago
ryanlayerlab/layer_lab_caw
NGS data analysis pipeline focused on somatic analysis- 0.1.16.* container/environment.yml
Size: 2.09 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
cguyomar/sarek Fork of nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing- 0.1.16 environment.yml
Size: 11.9 MB - Last synced: 10 months ago - Pushed: about 2 years ago
NPogo/scalepopgen_v2
- 0.1.16.* environment.yml
Size: 400 KB - Last synced: 10 months ago - Pushed: 12 months ago
NPogo/scalepopgen_v3 Fork of BioInf2305/scalepopgen_v3
- 0.1.16.* environment.yml
Size: 58.1 MB - Last synced: 8 months ago - Pushed: 8 months ago
STRIDES/NIHCloudLabAWS
Documentation and tutorials on using AWS for biomedical research- 0.1.16 docs/environment.yml
Size: 66.4 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
Clinical-Genomics-Lund/nextflow_wgs
- 0.1.16.* container/environment.yml
Size: 9.71 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
robert-altwasser/umi-processing
- 0.1.16 env/environment.yml
Size: 340 KB - Last synced: 6 months ago - Pushed: 6 months ago
eQTLGen/eQTLGenImpute
Genotype imputation pipeline for eQTLGen phase II project. Uses 1000G p3 30X WGS panel as a reference.- 0.1.16.* environment.yml
Size: 2.77 MB - Last synced: 19 days ago - Pushed: 19 days ago
cnr-ibba/SMARTER-database
Smarter database repository- 0.1.16.* environment.yml
Size: 1.43 MB - Last synced: 5 days ago - Pushed: 5 days ago
ericcombiolab/LRTK
A unified and versatile toolkit for analyzing Linked-Read sequencing data- environment.yaml
Size: 248 MB - Last synced: about 2 months ago - Pushed: about 2 months ago
nf-core/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!- 0.1.16.* modules/nf-core/vcftools/environment.yml
Size: 146 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
Popgen48/scalepopgen
- 0.1.16.* modules/local/vcftools/concat/environment.yml
- 0.1.16.* modules/local/vcftools/environment.yaml
- 0.1.16.* modules/local/vcftools/filter_sites/environment.yml
- 0.1.16.* modules/local/vcftools/keep/environment.yml
- 0.1.16.* modules/local/vcftools/remove/environment.yml
- 0.1.16.* modules/local/vcftools/selection/environment.yml
Size: 2.33 MB - Last synced: about 1 month ago - Pushed: 2 months ago
eQTLGen/ConvertVcf2Hdf5
eQTLGen phase II ipeline for converting imputed .vcf files into .hdf5 format.- 0.1.14.* environment.yml
Size: 49.3 MB - Last synced: 27 days ago - Pushed: 27 days ago
pmoris/FiMAB-bioinformatics
E-course on bioinformatics for the Fighting Malaria Across Borders training programme by the Institute of Tropical Medicine and VLIR-UOS (Belgium)- environment.yml
Size: 229 MB - Last synced: 24 days ago - Pushed: 25 days ago
BU-ISCIII/introduction_to_bioinformatics
In this training course you will find theory and practice material for introducing yourself to the basics of high throughput sequencing data analysis.- environment.yml
Size: 160 MB - Last synced: 4 days ago - Pushed: 4 days ago