Ecosyste.ms: Repos

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Package Usage: conda: vcftools

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/vcftools

Dependent Repos 38

GCJMackenzie/sarek Fork of nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
  • 0.1.16 environment.yml

Size: 16.4 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

JetBrains-Research/snakecharm
Plugin for PyCharm / IntelliJ IDEA Platform IDEs which adds support for Snakemake language.
  • 0.1.16 testData/wrappers_storage/bio/vcftools/filter/environment.yaml

Size: 2.93 MB - Last synced: 5 days ago - Pushed: 6 days ago

ccmbioinfo/crg2
Research pipeline for exploring clinically relevant genomic variants
  • 0.1.16 wrappers/vcftools/filter/environment.yaml

Size: 4.48 MB - Last synced: 19 days ago - Pushed: 19 days ago

lb83/subset_WES_AggV2
  • environment.yml

Size: 59.6 KB - Last synced: 12 months ago - Pushed: over 1 year ago

Clinical-Genomics-Lund/SomaticPanelPipeline
  • 0.1.16.* container/environment.yml

Size: 5.29 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

luisacusick/VC-Optimus
Bioinformatics pipeline to take short reads, align them to a reference, and call SNPs.
  • 0.1.16 environment.yml

Size: 138 KB - Last synced: about 1 year ago - Pushed: about 3 years ago

Clinical-Genomics-Lund/nextflow_myeloid
Nextflow pipeline for analysis of the twist myeloid panel
  • 0.1.16.* container/environment.yml

Size: 4.95 MB - Last synced: 8 months ago - Pushed: about 3 years ago

lifebit-ai/relate
Genomics Englands' Ancestry and Relatedness inference workflow
  • 0.1.15.* environment.yml

Size: 718 KB - Last synced: about 1 month ago - Pushed: about 1 year ago

lifebit-ai/siteqc
Genomics England's workflow for variant annotation and quality control.
  • 0.1.15.* environment.yml

Size: 242 KB - Last synced: about 1 month ago - Pushed: over 3 years ago

lifebit-ai/annotate
  • 0.1.15.* environment.yml

Size: 164 KB - Last synced: about 1 month ago - Pushed: over 3 years ago

eQTL-Catalogue/qcnorm
This pipeline will run QC measures of both genotype and phenotype data and will normalise quantified phenotypes
  • 0.1.16.* containers/genotype_qc/environment.yml

Size: 196 KB - Last synced: 4 months ago - Pushed: 4 months ago

fargenfo/linkseq-phase
  • 0.1.* environment.yml

Size: 65.4 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

h3abionet/chipimputation
Genotype Imputation Pipeline for H3Africa
  • 0.1.15.* environment.yml

Size: 232 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

jfnavarro/hla_pipeline
DNA and RNA variant calling pipelines with HLA typing and Neoantigen predictions
  • environment.yml

Size: 1.55 MB - Last synced: 7 months ago - Pushed: almost 3 years ago

snakemake/snakemake-wrappers
This repository contains wrapper scripts for fast integration of command line tools.
  • 0.1.16 bio/vcftools/filter/environment.yaml

Size: 13 MB - Last synced: over 1 year ago

kyleaoconnell22/RNA_seq_binder
  • 0.1.16 environment.yaml

Size: 86.9 KB - Last synced: 6 months ago - Pushed: over 2 years ago

biominer-lab/omics-workflow-images
Docker images for omics workflow.
  • 0.1.15 consensus-call-anotate/environment.yml

Size: 33.8 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

omicsclass/biodocker
docker images for bioinformatics
  • 0.1.16.* pop-evol-gwas/environment.yml
  • reseq/environment.yml

Size: 59.2 MB - Last synced: 12 months ago - Pushed: over 1 year ago

letaylor/snakemake-qtl
Snakemake pipeline for molecular trait QTL mapping
  • 0.1.15 environment.yml

Size: 18.2 MB - Last synced: about 1 year ago - Pushed: over 4 years ago

rtourdot/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
  • 0.1.16 environment.yml

Last synced: over 1 year ago

saurabhbelsare/recombinationAnalysis
  • LDHelmet_new/environment.yml

Size: 31.3 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

ryanlayerlab/layer_lab_chco
  • 0.1.16.* container/environment.yml

Size: 5.88 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

jana_ebler/genotyping-experiments
  • 0.1.16 env/environment.yml

Size: 22.7 MB - Last synced: over 1 year ago

cnrgh/LodSeq
LodSeq performs the genetic linkage analysis across families, by computing lod-scores given a gvcf file and a related tfam pedigree file
  • >=0.1.12 environment.yaml

Last synced: over 1 year ago

elarsonneur/LodSeq
LodSeq performs the genetic linkage analysis across families, by computing lod-scores given a gvcf file and a related tfam pedigree file
  • >=0.1.12 environment.yaml

Last synced: over 1 year ago

denis.yuen/Sarek
  • 0.1.15.* containers/qctools/environment.yml

Last synced: over 1 year ago

parklab/MosaicForecast
A mosaic detecting software based on phasing and random forest
  • environment.yaml

Size: 1.9 GB - Last synced: 2 months ago - Pushed: 9 months ago

uc-cdis/gen3-augur
Python CLI for data utils
  • environment.yml

Size: 15.3 MB - Last synced: 4 days ago - Pushed: 4 days ago

bailey-lab/MIPTools
A suite of computational tools used for molecular inversion probe design, data processing, and analysis.
  • environment.yml

Size: 270 MB - Last synced: 4 days ago - Pushed: 4 days ago

hivlab/sarscov2-epidemiology 📦
Visualisation of SARS-CoV-2 genomic epidemiology
  • environment.yml

Size: 119 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

davismcc/fibroblast-clonality
Website for the fibroblast clonality project conducted at EMBL-EBI and the Wellcome Sanger Institute ca 2017-2019.
  • 0.1.16.* environment.yml

Size: 94.8 MB - Last synced: about 1 year ago - Pushed: over 4 years ago

percyfal/snakemake-rules
Library of snakemake rules.
  • environment.yaml

Size: 3.85 MB - Last synced: about 1 year ago - Pushed: over 5 years ago

EpiDiverse/ewas
The EpiDiverse Epigenome-Wide Association Study Pipeline, implemented with Nextflow
  • 0.1.16.* env/environment.yml

Size: 20.9 MB - Last synced: 7 months ago - Pushed: about 1 year ago

IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020
  • 0.1.16 environment.yml

Size: 41.2 MB - Last synced: 10 months ago - Pushed: over 2 years ago

victor-moreno/ImputationTutorial
Tutorial on preparing SNP data for imputation using Binder
  • environment.yml

Size: 2.56 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

bioinformatics-lab/scratch
  • 0.1.14 environment.yml

Size: 10.8 MB - Last synced: about 1 year ago - Pushed: about 6 years ago

bioinformatics-lab/BioDragon
  • 0.1.14 environment.yml

Size: 10.9 MB - Last synced: about 1 year ago - Pushed: over 6 years ago

mbosio85/ngs_variant_calling
ngs_variant_calling
  • 0.1.16.* environment.yml

Size: 1.75 MB - Last synced: about 1 year ago - Pushed: over 4 years ago

mbosio85/nf-core-gatkcohortcall
WGS calling for cohorts following gatk guidelines
  • 0.1.16.* environment.yml

Size: 120 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

GMS6804-master/Sarek
  • 0.1.16.* environment.yml

Size: 43.4 MB - Last synced: 2 months ago - Pushed: almost 5 years ago

kelly-sovacool/tiger_salamander_project 📦
SNP pipeline using Snakemake for the Weisrock Lab's Tiger Salamander project.
  • config/environment.yml

Size: 96.7 MB - Last synced: 25 days ago - Pushed: over 4 years ago

bfairkun/Comparative_eQTL
Primary data: Chimp eQTLs called from heart tissue samples
  • 0.1.16 code/snakemake_workflow/envs/environment.yml

Size: 583 MB - Last synced: 10 months ago - Pushed: over 3 years ago

Oodnadatta/Hugodims-pipeline-2
  • 0.1.14 environment.yml

Size: 3.91 KB - Last synced: 25 days ago - Pushed: over 7 years ago

nephantes/gatk4
  • 0.1.16.* environment.yml

Size: 1.73 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

Genomic-Medicine-Linkoping/nf-core-sarek
  • 0.1.16 environment.yml

Size: 6.25 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago

rchapman2000/ont-ref-based-assembly
A reference-based assembly pipeline designed for analysis of Oxford Nanopore sequencing data
  • 0.1.16.* environment.yml

Size: 47.9 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

arisp99/miptools-sandbox
A sandbox for testing MIPTools functions
  • environment.yml

Size: 8 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

Jigyasa3/Mikheyevunit_t5phage
  • environment.yml

Size: 105 MB - Last synced: 10 months ago - Pushed: almost 8 years ago

daewoooo/IntegrativePhasingPaper
Supplementary files for the study "Dense and accurate whole-chromosome haplotyping of individual genomes"
  • 0.1.14 environment.yml

Size: 7.65 MB - Last synced: 15 days ago - Pushed: over 6 years ago

sripaladugu/germline_somatic
  • 0.1.16 environment.yml

Size: 5.09 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

nlm-irp-jianglab/bioinfo-wwbe
💧 Bioinformatic pipeline for wastewater-based epidemiology project
  • 0.1.16 environment.yml

Size: 620 KB - Last synced: 7 months ago - Pushed: about 1 year ago

olavurmortensen/linkedsim
  • 0.1.16.* environment.yml

Size: 10.7 KB - Last synced: about 1 year ago - Pushed: about 4 years ago

ryanlayerlab/layer_lab_caw
NGS data analysis pipeline focused on somatic analysis
  • 0.1.16.* container/environment.yml

Size: 2.09 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

cguyomar/sarek Fork of nf-core/sarek
Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
  • 0.1.16 environment.yml

Size: 11.9 MB - Last synced: 10 months ago - Pushed: about 2 years ago

NPogo/scalepopgen_v2
  • 0.1.16.* environment.yml

Size: 400 KB - Last synced: 10 months ago - Pushed: 12 months ago

NPogo/scalepopgen_v3 Fork of BioInf2305/scalepopgen_v3
  • 0.1.16.* environment.yml

Size: 58.1 MB - Last synced: 8 months ago - Pushed: 8 months ago

STRIDES/NIHCloudLabAWS
Documentation and tutorials on using AWS for biomedical research
  • 0.1.16 docs/environment.yml

Size: 66.4 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

Clinical-Genomics-Lund/nextflow_wgs
  • 0.1.16.* container/environment.yml

Size: 9.71 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

robert-altwasser/umi-processing
  • 0.1.16 env/environment.yml

Size: 340 KB - Last synced: 6 months ago - Pushed: 6 months ago

eQTLGen/eQTLGenImpute
Genotype imputation pipeline for eQTLGen phase II project. Uses 1000G p3 30X WGS panel as a reference.
  • 0.1.16.* environment.yml

Size: 2.77 MB - Last synced: 19 days ago - Pushed: 19 days ago

cnr-ibba/SMARTER-database
Smarter database repository
  • 0.1.16.* environment.yml

Size: 1.43 MB - Last synced: 5 days ago - Pushed: 5 days ago

ericcombiolab/LRTK
A unified and versatile toolkit for analyzing Linked-Read sequencing data
  • environment.yaml

Size: 248 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

nf-core/modules
Repository to host tool-specific module files for the Nextflow DSL2 community!
  • 0.1.16.* modules/nf-core/vcftools/environment.yml

Size: 146 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

Popgen48/scalepopgen
  • 0.1.16.* modules/local/vcftools/concat/environment.yml
  • 0.1.16.* modules/local/vcftools/environment.yaml
  • 0.1.16.* modules/local/vcftools/filter_sites/environment.yml
  • 0.1.16.* modules/local/vcftools/keep/environment.yml
  • 0.1.16.* modules/local/vcftools/remove/environment.yml
  • 0.1.16.* modules/local/vcftools/selection/environment.yml

Size: 2.33 MB - Last synced: about 1 month ago - Pushed: 2 months ago

eQTLGen/ConvertVcf2Hdf5
eQTLGen phase II ipeline for converting imputed .vcf files into .hdf5 format.
  • 0.1.14.* environment.yml

Size: 49.3 MB - Last synced: 27 days ago - Pushed: 27 days ago

pmoris/FiMAB-bioinformatics
E-course on bioinformatics for the Fighting Malaria Across Borders training programme by the Institute of Tropical Medicine and VLIR-UOS (Belgium)
  • environment.yml

Size: 229 MB - Last synced: 24 days ago - Pushed: 25 days ago

BU-ISCIII/introduction_to_bioinformatics
In this training course you will find theory and practice material for introducing yourself to the basics of high throughput sequencing data analysis.
  • environment.yml

Size: 160 MB - Last synced: 4 days ago - Pushed: 4 days ago