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GitHub / bailey-lab / MIPTools
A suite of computational tools used for molecular inversion probe design, data processing, and analysis.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bailey-lab%2FMIPTools
Stars: 6
Forks: 9
Open Issues: 15
License: mit
Language: Jupyter Notebook
Repo Size: 274 MB
Dependencies:
63
Created: over 5 years ago
Updated: 2 days ago
Last pushed: about 24 hours ago
Last synced: about 20 hours ago
Files
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Readme
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Dependencies
- myst_parser ==0.15.2
- readthedocs-sphinx-search ==0.1.1
- sphinx ==4.3.2
- sphinx-licenseinfo ==0.3.0
- sphinx-notfound-page ==0.8
- sphinx-toolbox ==2.18.2
- sphinx_copybutton ==0.4.0
- sphinx_rtd_theme ==1.0.0
- actions/checkout v2 composite
- actions/upload-artifact v2 composite
- andstor/file-existence-action v1.0.1 composite
- eWaterCycle/setup-singularity v7 composite
- actions/checkout v2 composite
environment.yml
conda
- basemap-data-hires
- bcftools
- bioconductor-dnacopy
- biopython
- bowtie2
- bwa
- freebayes
- gatk4
- htslib
- jupyter_contrib_nbextensions
- lastz
- matplotlib
- matplotlib-venn
- nbconvert
- notebook
- numpy
- openpyxl
- pandas
- parallel
- pip
- plotly
- plotnine
- primer3
- primer3-py
- pysam
- python
- r-base
- r-devtools
- r-dplyr
- r-dt
- r-epitools
- r-ggplot2
- r-irkernel
- r-knitr
- r-pkgbuild
- r-plotly
- r-shiny
- rpy2
- samtools
- scandir
- scikit-allel
- scikit-learn
- scipy
- seaborn
- seqtk 1.3.*
- simplegeneric
- tblib
- texlive-core
- vcftools
- xlrd