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GitHub / parklab / MosaicForecast
A mosaic detecting software based on phasing and random forest
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/parklab%2FMosaicForecast
Stars: 59
Forks: 20
Open Issues: 10
License: mit
Language: Python
Repo Size: 1.9 GB
Dependencies:
25
Created: about 6 years ago
Updated: 3 months ago
Last pushed: 9 months ago
Last synced: 2 months ago
Files
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Readme
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Dependencies
environment.yaml
conda
- bedtools 2.25.0.*
- numpy 1.16.1.*
- pandas 0.25.1.*
- pyfaidx 0.5.3.*
- pysam 0.15.2.*
- pysamstats 1.1.2.*
- python 3.6.*
- r-base 3.5.1.*
- r-caret
- r-devtools
- r-e1071
- r-ggplot2
- r-glmnet
- r-mlr
- r-nnet
- r-paramhelpers
- r-randomforest
- r-rcolorbrewer
- r-xml
- regex
- samtools 1.9.*
- scipy 1.2.1.*
- snakemake
- vcftools
Dockerfile
docker
- ubuntu 18.04 build