Ecosyste.ms: Repos

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Package Usage: conda: bioconductor-s4vectors

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/bioconductor-s4vectors

Dependent Repos 42

ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
  • 0.20.1 containers/qiime2-2019.10/environment.yml
  • 0.24.0 containers/r-3.6.1/environment.yml

Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago

brucemoran/tumour_only
Tumour-only DNA sequencing analysis
  • 0.28.1 environment.yaml

Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

reimandlab/ActiveDriverDB
ActiveDriverDB
  • environment.yml

Size: 43.2 MB - Last synced: 28 days ago - Pushed: about 1 year ago

casrssk/WGS-analysis-in-C_trachomatis
  • 0.24.0 linux/sample/envs/environment.yml

Size: 7.39 MB - Last synced: 4 months ago - Pushed: about 2 years ago

villegar/DoGE
Differential Gene Expression Analysis Pipeline
  • 0.24.0.* environment.yml

Size: 16 MB - Last synced: 10 months ago - Pushed: almost 3 years ago

lfnothias/qiime2
  • 0.28.0.* environment.yml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

stianlagstad/chimeraviz
chimeraviz is an R package that automates the creation of chimeric RNA visualizations.
  • environment.yml

Size: 2.9 MB - Last synced: 27 days ago - Pushed: 6 months ago

krinsman/dissertation
Source code and Jupyter notebooks related to PhD dissertation.
  • 0.28.1 environment.yml

Last synced: over 1 year ago

broadinstitute/malaria-amplicon-pipeline
  • 0.24.0.* environment.yml

Size: 171 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

evoosa/16S_bacteria_detector
Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms
  • 0.20.1 src/environment.yml

Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

Wiselab2/NGPINT
  • 0.8.11 environment.yml

Size: 300 MB - Last synced: 7 months ago - Pushed: over 2 years ago

davidlevybooth/Rhodococcus_Transcriptomics
Rhodococcus Transcriptomic Pipeline
  • 0.16.0.* environment.yaml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: about 5 years ago

web-mev/mev-normalize
  • 0.28.0 docker/environment.yml

Size: 16.6 KB - Last synced: 20 days ago - Pushed: 3 months ago

ColtonGarelli/notebooks2020
  • 0.26.* environment.yml

Size: 20.5 KB - Last synced: 2 months ago - Pushed: almost 4 years ago

dahjan/DMS_opt
  • 0.24.0 environment.yml

Size: 7.82 MB - Last synced: 7 months ago - Pushed: over 3 years ago

quadram-institute-bioscience/dadaist2
Dadaist2 🟹 Highway to R
  • 0.28.1 lab/class/environment.yml

Size: 39.4 MB - Last synced: 3 months ago - Pushed: 3 months ago

yangmqglobe/dapipe
è‡Ș抹挖的 ATAC-Seq ćˆ†æžæ”çš‹
  • 0.28.1.* environment.yml

Size: 193 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

andrealauria104/ngsRtools
A Suite of R Packages for NGS-based Epigenomic Data Analysis.
  • 0.24.0.* data/environment.yml

Size: 714 KB - Last synced: 27 days ago - Pushed: about 1 year ago

bokulich-lab/advanced-comp-bio-tutorial
Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022
  • 0.28.1 environment.yml

Size: 77.9 MB - Last synced: 12 months ago - Pushed: 12 months ago

Colorado-State-University-CMB/Intro-to-qCMB-2022
Class work for Intro to qCMB
  • 0.32.3 R_on_Summit/environment.yml

Size: 31.4 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

omicsclass/biodocker
docker images for bioinformatics
  • 0.20.1.* ampliseq-q2/environment.yml

Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago

jiangweiyao/RefNAAP
Reference based Nanopore assembly analysis pipeline
  • 0.28.0.* environment.yml

Size: 76.4 MB - Last synced: 29 days ago - Pushed: about 3 years ago

greenelab/2022-cf-sputum
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways
  • 0.24.0 environment.yml

Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago

krinsman/droplets
  • 0.28.1 environment.yml

Last synced: over 1 year ago

naim-panjwani/LocusFocus
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
  • 0.24.0 environments/environment.yml

Size: 76.7 MB - Last synced: 5 days ago - Pushed: about 1 year ago

kevinpryan/caf-subtype-analysis
  • 0.32.3 environment.yml

Size: 56.9 MB - Last synced: 8 months ago - Pushed: 8 months ago

ndelrossi7/giotto-tutorial-binder
  • environment.yml

Size: 5.62 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow
  • 0.32.3 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

gonzalosm98/scRNA-SeqAnalysis
  • 0.28.1 environment.yml

Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

dib-lab/elvers
(formerly eelpond) an automated RNA-Seq workflow system
  • 0.16.0.* elvers/rules/edgeR/environment.yml

Size: 106 MB - Last synced: 4 months ago - Pushed: over 3 years ago

NatPombubpa/Qiime2_2022.8_binder
Qiime2_2022.8_binder test
  • 0.32.3.* environment.yml

Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago

LankyCyril/merip-seq-2019
  • 0.18.3 environment.yaml

Size: 531 KB - Last synced: over 1 year ago

liaoherui/GDmicro
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.
  • 0.24.0 environment.yaml

Size: 3.57 MB - Last synced: 22 days ago - Pushed: about 2 months ago

gagneurlab/transmicron
  • 0.30.0.* environment.yml

Size: 16.7 MB - Last synced: 5 days ago - Pushed: over 1 year ago

samwitham/PromoterArchitecture
Arabidopsis thaliana promoter architecture analysis pipeline
  • 0.24.0 environment.yml

Size: 187 MB - Last synced: 7 months ago - Pushed: 9 months ago

lkmklsmn/DrivAER
DrivAER: Identification of Driving transcriptional programs using AutoEncoder based Relevance scores
  • 0.24.0 environment.yml

Size: 116 MB - Last synced: 7 months ago - Pushed: over 3 years ago

phbradley/tcr-gwas
Collaboration to find genetic variation associated with TCR repertoire differences
  • 0.28.1 environment.yml

Size: 176 MB - Last synced: 26 days ago - Pushed: over 2 years ago

magdalenarussell/mechanistic-trimming
Collaboration to identify sequence-level determinants of nucleotide trimming during V(D)J recombination
  • 0.32.3 environment.yml

Size: 185 MB - Last synced: 20 days ago - Pushed: 20 days ago

russHyde/bfx_201909
Statistical Bioinformatics presentation
  • 0.20.1.* envs/environment.yml

Size: 327 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020
  • 0.20.1 environment.yml

Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago

MikeTrizna/binder-qiime
Testing if qiime can be installed and used in Binder
  • 0.20.1.* environment.yml

Size: 6.84 KB - Last synced: about 2 months ago - Pushed: about 5 years ago

maizeumn/grn
Maize Gene regulatory network (MaizeGRN)
  • 0.28.0.* environment.yml

Size: 24.1 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

davidlevybooth/Praxis
  • 0.16.0.* envs/environment.yaml

Size: 137 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

yangmqglobe/depipe
è‡Ș抹挖的 ChIP-Seq ćˆ†æžæ”çš‹
  • 0.28.1.* environment.yml

Size: 16.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

asdcid/Genome_Assembly_Assessment
  • 0.22.0 environment.yml

Size: 39.4 MB - Last synced: about 1 year ago - Pushed: over 4 years ago

JungeAlexander/rain
Pipeline generating the RAIN interaction files
  • 0.8.11 environment.yml

Size: 424 KB - Last synced: 9 months ago - Pushed: over 7 years ago

gongyh/containers
Series of containers
  • 0.20.1.* scgs/environment.yml

Size: 5.28 MB - Last synced: 28 days ago - Pushed: 11 months ago

SystemsBiologist/PSCAN
  • 0.20.1 environment.yml

Size: 14.2 MB - Last synced: about 1 month ago - Pushed: over 4 years ago

mwang87/GNPS_Volatility_Notebooks
  • 0.20.1.* environment.yml

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

jhgille2/rna_seq_pipeline_template
WIP reproducible pipeline for rna seq differential expression analysis
  • 0.32.4 environment.yml

Size: 77.1 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

hmartiniano/go_genes_semsim_parallel
R script to calculate a gene semantic similarity matrix for approved HGNC genes using the GOSemSim package
  • 0.22.0 environment.yml

Size: 19.5 KB - Last synced: 7 months ago - Pushed: 10 months ago

qbicsoftware/r-container-lib
A collection of project-related Dockerfiles for a controlled R environment with defined R packages
  • 0.22.0.* projects/QMICE/environment.yml
  • 0.20.1.* projects/QSSSS/environment.yml
  • 0.16.0.* projects/QTEST/environment.yml

Size: 150 KB - Last synced: 2 days ago - Pushed: about 3 years ago

zdk123/SpiecEasiSLR_manuscript
Code to fetch data and reproduce figures for _Disentangling microbial associations from hidden environmental and technical factors via latent graphical models_
  • 0.24.0.* docker/environment.yml

Size: 190 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

MichelleBadri/NormCorr-manuscript
Code and data for reproducing NormCorr manuscript
  • 0.24.0.* docker/environment.yml

Size: 106 KB - Last synced: about 1 year ago - Pushed: about 4 years ago

daewoooo/IntegrativePhasingPaper
Supplementary files for the study "Dense and accurate whole-chromosome haplotyping of individual genomes"
  • 0.12.2 environment.yml

Size: 7.65 MB - Last synced: 2 days ago - Pushed: over 6 years ago

crlero/snakemake-tutorial
  • 0.32.3.* handson/workflow/environment.yaml

Size: 3.39 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

web-mev/mev-lrt
DESeq2 implementation of likelihood ratio test
  • 0.32.4 docker/environment.yml

Size: 12.7 KB - Last synced: 20 days ago - Pushed: 3 months ago

Jacobog02/Maslenlab_Thesis
Thesis code repository for analysis of Illumina Bisulfite Sequencing data.
  • 0.24.0.* env/environment.yml

Size: 2.25 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

Dayueban/ampliseq Fork of nf-core/ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
  • 0.16.0.* environment.yml

Size: 229 KB - Last synced: 10 months ago - Pushed: about 5 years ago

TeamPerie/Report_Daphne Fork of dvginneken/Reproduce_Thesis_InstitutCurie
  • 0.36.0 environment.yml

Size: 32.6 MB - Last synced: 10 months ago - Pushed: 10 months ago

davidecarlson/Snakemake_diff_gene_expr
Differential Gene Expression with Snakemake
  • 0.28.0 environment.yml

Size: 37.1 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

bihealth/snappy-pipeline
SNAPPY Nucleic Acid Processing in Python
  • snappy_wrappers/wrappers/scarHRD/environment.yaml
  • snappy_wrappers/wrappers/scarHRD/run/environment.yaml
  • snappy_wrappers/wrappers/sequenza/run/environment.yaml

Size: 7.57 MB - Last synced: 29 days ago - Pushed: 29 days ago

robert-altwasser/umi-processing
  • 0.36.0 env/environment.yml

Size: 340 KB - Last synced: 5 months ago - Pushed: 6 months ago

bioc/chimeraviz
This is a read-only mirror of the git repos at https://bioconductor.org
  • environment.yml

Size: 2.81 MB - Last synced: 13 days ago - Pushed: 14 days ago

Mye-InfoBank/SIMBA
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.
  • 0.40.2 docker/rpy/environment.yml

Size: 981 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

IARCbioinfo/DPclust-nf
Nextflow workflow to run DPclust on a series of samples
  • environment.yml

Size: 1.21 MB - Last synced: 2 months ago - Pushed: 2 months ago

quevedor2/mini_projects
Repository for mini projects that don't warrant a repo of their own
  • 0.28.1 PDAC_AhR/envs/environment.yaml

Size: 657 KB - Last synced: 11 days ago - Pushed: 12 days ago

WenfeiY/P.patens_geno_design
Python and R script for Physcomitrium patens genome design
  • 0.40.2 environment.yml

Size: 865 KB - Last synced: about 2 months ago - Pushed: about 2 months ago

a-hr/pol2speed_pipeline
  • 0.40.2 environment.yaml

Size: 15.9 MB - Last synced: about 7 hours ago - Pushed: about 9 hours ago