Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: conda: bioconductor-s4vectors
View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/bioconductor-s4vectors
Dependent Repos 42
ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)- 0.20.1 containers/qiime2-2019.10/environment.yml
- 0.24.0 containers/r-3.6.1/environment.yml
Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago
brucemoran/tumour_only
Tumour-only DNA sequencing analysis- 0.28.1 environment.yaml
Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
reimandlab/ActiveDriverDB
ActiveDriverDB- environment.yml
Size: 43.2 MB - Last synced: 28 days ago - Pushed: about 1 year ago
casrssk/WGS-analysis-in-C_trachomatis
- 0.24.0 linux/sample/envs/environment.yml
Size: 7.39 MB - Last synced: 4 months ago - Pushed: about 2 years ago
villegar/DoGE
Differential Gene Expression Analysis Pipeline- 0.24.0.* environment.yml
Size: 16 MB - Last synced: 10 months ago - Pushed: almost 3 years ago
lfnothias/qiime2
- 0.28.0.* environment.yml
Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
stianlagstad/chimeraviz
chimeraviz is an R package that automates the creation of chimeric RNA visualizations.- environment.yml
Size: 2.9 MB - Last synced: 27 days ago - Pushed: 6 months ago
krinsman/dissertation
Source code and Jupyter notebooks related to PhD dissertation.- 0.28.1 environment.yml
Last synced: over 1 year ago
broadinstitute/malaria-amplicon-pipeline
- 0.24.0.* environment.yml
Size: 171 KB - Last synced: about 1 year ago - Pushed: about 1 year ago
evoosa/16S_bacteria_detector
Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms- 0.20.1 src/environment.yml
Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
Wiselab2/NGPINT
- 0.8.11 environment.yml
Size: 300 MB - Last synced: 7 months ago - Pushed: over 2 years ago
davidlevybooth/Rhodococcus_Transcriptomics
Rhodococcus Transcriptomic Pipeline- 0.16.0.* environment.yaml
Size: 21.5 KB - Last synced: about 1 year ago - Pushed: about 5 years ago
web-mev/mev-normalize
- 0.28.0 docker/environment.yml
Size: 16.6 KB - Last synced: 20 days ago - Pushed: 3 months ago
ColtonGarelli/notebooks2020
- 0.26.* environment.yml
Size: 20.5 KB - Last synced: 2 months ago - Pushed: almost 4 years ago
dahjan/DMS_opt
- 0.24.0 environment.yml
Size: 7.82 MB - Last synced: 7 months ago - Pushed: over 3 years ago
quadram-institute-bioscience/dadaist2
Dadaist2 đš Highway to R- 0.28.1 lab/class/environment.yml
Size: 39.4 MB - Last synced: 3 months ago - Pushed: 3 months ago
yangmqglobe/dapipe
èȘćšćç ATAC-Seq ćææ”çš- 0.28.1.* environment.yml
Size: 193 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
andrealauria104/ngsRtools
A Suite of R Packages for NGS-based Epigenomic Data Analysis.- 0.24.0.* data/environment.yml
Size: 714 KB - Last synced: 27 days ago - Pushed: about 1 year ago
bokulich-lab/advanced-comp-bio-tutorial
Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022- 0.28.1 environment.yml
Size: 77.9 MB - Last synced: 12 months ago - Pushed: 12 months ago
Colorado-State-University-CMB/Intro-to-qCMB-2022
Class work for Intro to qCMB- 0.32.3 R_on_Summit/environment.yml
Size: 31.4 MB - Last synced: about 2 months ago - Pushed: over 1 year ago
omicsclass/biodocker
docker images for bioinformatics- 0.20.1.* ampliseq-q2/environment.yml
Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago
jiangweiyao/RefNAAP
Reference based Nanopore assembly analysis pipeline- 0.28.0.* environment.yml
Size: 76.4 MB - Last synced: 29 days ago - Pushed: about 3 years ago
greenelab/2022-cf-sputum
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways- 0.24.0 environment.yml
Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago
naim-panjwani/LocusFocus
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)- 0.24.0 environments/environment.yml
Size: 76.7 MB - Last synced: 5 days ago - Pushed: about 1 year ago
kevinpryan/caf-subtype-analysis
- 0.32.3 environment.yml
Size: 56.9 MB - Last synced: 8 months ago - Pushed: 8 months ago
ndelrossi7/giotto-tutorial-binder
- environment.yml
Size: 5.62 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow- 0.32.3 environment.yml
Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
gonzalosm98/scRNA-SeqAnalysis
- 0.28.1 environment.yml
Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
dib-lab/elvers
(formerly eelpond) an automated RNA-Seq workflow system- 0.16.0.* elvers/rules/edgeR/environment.yml
Size: 106 MB - Last synced: 4 months ago - Pushed: over 3 years ago
NatPombubpa/Qiime2_2022.8_binder
Qiime2_2022.8_binder test- 0.32.3.* environment.yml
Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago
liaoherui/GDmicro
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.- 0.24.0 environment.yaml
Size: 3.57 MB - Last synced: 22 days ago - Pushed: about 2 months ago
gagneurlab/transmicron
- 0.30.0.* environment.yml
Size: 16.7 MB - Last synced: 5 days ago - Pushed: over 1 year ago
samwitham/PromoterArchitecture
Arabidopsis thaliana promoter architecture analysis pipeline- 0.24.0 environment.yml
Size: 187 MB - Last synced: 7 months ago - Pushed: 9 months ago
lkmklsmn/DrivAER
DrivAER: Identification of Driving transcriptional programs using AutoEncoder based Relevance scores- 0.24.0 environment.yml
Size: 116 MB - Last synced: 7 months ago - Pushed: over 3 years ago
phbradley/tcr-gwas
Collaboration to find genetic variation associated with TCR repertoire differences- 0.28.1 environment.yml
Size: 176 MB - Last synced: 26 days ago - Pushed: over 2 years ago
magdalenarussell/mechanistic-trimming
Collaboration to identify sequence-level determinants of nucleotide trimming during V(D)J recombination- 0.32.3 environment.yml
Size: 185 MB - Last synced: 20 days ago - Pushed: 20 days ago
russHyde/bfx_201909
Statistical Bioinformatics presentation- 0.20.1.* envs/environment.yml
Size: 327 KB - Last synced: about 1 year ago - Pushed: over 4 years ago
IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020- 0.20.1 environment.yml
Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago
MikeTrizna/binder-qiime
Testing if qiime can be installed and used in Binder- 0.20.1.* environment.yml
Size: 6.84 KB - Last synced: about 2 months ago - Pushed: about 5 years ago
maizeumn/grn
Maize Gene regulatory network (MaizeGRN)- 0.28.0.* environment.yml
Size: 24.1 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
davidlevybooth/Praxis
- 0.16.0.* envs/environment.yaml
Size: 137 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
yangmqglobe/depipe
èȘćšćç ChIP-Seq ćææ”çš- 0.28.1.* environment.yml
Size: 16.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
asdcid/Genome_Assembly_Assessment
- 0.22.0 environment.yml
Size: 39.4 MB - Last synced: about 1 year ago - Pushed: over 4 years ago
JungeAlexander/rain
Pipeline generating the RAIN interaction files- 0.8.11 environment.yml
Size: 424 KB - Last synced: 9 months ago - Pushed: over 7 years ago
gongyh/containers
Series of containers- 0.20.1.* scgs/environment.yml
Size: 5.28 MB - Last synced: 28 days ago - Pushed: 11 months ago
SystemsBiologist/PSCAN
- 0.20.1 environment.yml
Size: 14.2 MB - Last synced: about 1 month ago - Pushed: over 4 years ago
mwang87/GNPS_Volatility_Notebooks
- 0.20.1.* environment.yml
Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
jhgille2/rna_seq_pipeline_template
WIP reproducible pipeline for rna seq differential expression analysis- 0.32.4 environment.yml
Size: 77.1 KB - Last synced: about 1 year ago - Pushed: about 1 year ago
hmartiniano/go_genes_semsim_parallel
R script to calculate a gene semantic similarity matrix for approved HGNC genes using the GOSemSim package- 0.22.0 environment.yml
Size: 19.5 KB - Last synced: 7 months ago - Pushed: 10 months ago
qbicsoftware/r-container-lib
A collection of project-related Dockerfiles for a controlled R environment with defined R packages- 0.22.0.* projects/QMICE/environment.yml
- 0.20.1.* projects/QSSSS/environment.yml
- 0.16.0.* projects/QTEST/environment.yml
Size: 150 KB - Last synced: 2 days ago - Pushed: about 3 years ago
zdk123/SpiecEasiSLR_manuscript
Code to fetch data and reproduce figures for _Disentangling microbial associations from hidden environmental and technical factors via latent graphical models_- 0.24.0.* docker/environment.yml
Size: 190 KB - Last synced: about 1 year ago - Pushed: over 4 years ago
MichelleBadri/NormCorr-manuscript
Code and data for reproducing NormCorr manuscript- 0.24.0.* docker/environment.yml
Size: 106 KB - Last synced: about 1 year ago - Pushed: about 4 years ago
daewoooo/IntegrativePhasingPaper
Supplementary files for the study "Dense and accurate whole-chromosome haplotyping of individual genomes"- 0.12.2 environment.yml
Size: 7.65 MB - Last synced: 2 days ago - Pushed: over 6 years ago
crlero/snakemake-tutorial
- 0.32.3.* handson/workflow/environment.yaml
Size: 3.39 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
web-mev/mev-lrt
DESeq2 implementation of likelihood ratio test- 0.32.4 docker/environment.yml
Size: 12.7 KB - Last synced: 20 days ago - Pushed: 3 months ago
Jacobog02/Maslenlab_Thesis
Thesis code repository for analysis of Illumina Bisulfite Sequencing data.- 0.24.0.* env/environment.yml
Size: 2.25 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
Dayueban/ampliseq Fork of nf-core/ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2- 0.16.0.* environment.yml
Size: 229 KB - Last synced: 10 months ago - Pushed: about 5 years ago
TeamPerie/Report_Daphne Fork of dvginneken/Reproduce_Thesis_InstitutCurie
- 0.36.0 environment.yml
Size: 32.6 MB - Last synced: 10 months ago - Pushed: 10 months ago
davidecarlson/Snakemake_diff_gene_expr
Differential Gene Expression with Snakemake- 0.28.0 environment.yml
Size: 37.1 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago
bihealth/snappy-pipeline
SNAPPY Nucleic Acid Processing in Python- snappy_wrappers/wrappers/scarHRD/environment.yaml
- snappy_wrappers/wrappers/scarHRD/run/environment.yaml
- snappy_wrappers/wrappers/sequenza/run/environment.yaml
Size: 7.57 MB - Last synced: 29 days ago - Pushed: 29 days ago
robert-altwasser/umi-processing
- 0.36.0 env/environment.yml
Size: 340 KB - Last synced: 5 months ago - Pushed: 6 months ago
bioc/chimeraviz
This is a read-only mirror of the git repos at https://bioconductor.org- environment.yml
Size: 2.81 MB - Last synced: 13 days ago - Pushed: 14 days ago
Mye-InfoBank/SIMBA
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.- 0.40.2 docker/rpy/environment.yml
Size: 981 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
IARCbioinfo/DPclust-nf
Nextflow workflow to run DPclust on a series of samples- environment.yml
Size: 1.21 MB - Last synced: 2 months ago - Pushed: 2 months ago
quevedor2/mini_projects
Repository for mini projects that don't warrant a repo of their own- 0.28.1 PDAC_AhR/envs/environment.yaml
Size: 657 KB - Last synced: 11 days ago - Pushed: 12 days ago
WenfeiY/P.patens_geno_design
Python and R script for Physcomitrium patens genome design- 0.40.2 environment.yml
Size: 865 KB - Last synced: about 2 months ago - Pushed: about 2 months ago
a-hr/pol2speed_pipeline
- 0.40.2 environment.yaml
Size: 15.9 MB - Last synced: about 7 hours ago - Pushed: about 9 hours ago