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GitHub / zdk123 / SpiecEasiSLR_manuscript

Code to fetch data and reproduce figures for _Disentangling microbial associations from hidden environmental and technical factors via latent graphical models_

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/zdk123%2FSpiecEasiSLR_manuscript

Stars: 1
Forks: 0
Open Issues: 0

License: None
Language: R
Repo Size: 190 KB
Dependencies: 167

Created: over 4 years ago
Updated: about 4 years ago
Last pushed: over 4 years ago
Last synced: about 1 year ago

Files

Readme

Dependencies

docker/environment.yml conda

asn1crypto 1.0.1.*
binutils_impl_linux-64 2.31.1.*
binutils_linux-64 2.31.1.*
bioconductor-biobase 2.46.0.*
bioconductor-biocgenerics 0.32.0.*
bioconductor-biomformat 1.14.0.*
bioconductor-biostrings 2.54.0.*
bioconductor-iranges 2.20.0.*
bioconductor-multtest 2.42.0.*
bioconductor-phyloseq 1.30.0.*
bioconductor-rhdf5 2.30.0.*
bioconductor-rhdf5lib 1.8.0.*
bioconductor-s4vectors 0.24.0.*
bioconductor-xvector 0.26.0.*
bioconductor-zlibbioc 1.32.0.*
bwidget 1.9.13.*
bzip2 1.0.8.*
certifi 2019.9.11.*
cffi 1.12.3.*
chardet 3.0.4.*
conda-package-handling 1.6.0.*
cryptography 2.7.*
curl 7.65.3.*
fontconfig 2.13.0.*
freetype 2.10.0.*
fribidi 1.0.5.*
gettext 0.19.8.1.*
gfortran_impl_linux-64 7.3.0.*
gfortran_linux-64 7.3.0.*
glib 2.56.2.*
graphite2 1.3.13.*
harfbuzz 1.9.0.*
idna 2.8.*
libcurl 7.65.3.*
libedit 3.1.20181209.*
libffi 3.2.1.*
libgcc-ng 9.1.0.*
libgfortran-ng 7.3.0.*
libiconv 1.15.*
libopenblas 0.3.7.*
libpng 1.6.37.*
libssh2 1.8.2.*
libstdcxx-ng 9.1.0.*
libtiff 4.0.10.*
libuuid 1.0.3.*
libxcb 1.13.*
libxml2 2.9.9.*
lz4-c 1.8.3.*
make 4.2.1.*
ncurses 6.1.*
openblas 0.3.7.*
openssl 1.1.1c.*
pango 1.42.4.*
pcre 8.43.*
pip
pixman 0.38.0.*
pthread-stubs 0.4.*
pycosat 0.6.3.*
pycparser 2.19.*
r-ade4 1.7_13.*
r-ape 5.3.*
r-askpass 1.1.*
r-assertthat 0.2.1.*
r-backports 1.1.5.*
r-base 3.6.1.*
r-brew 1.0_6.*
r-callr 3.3.2.*
r-cli 1.1.0.*
r-clipr 0.7.0.*
r-clisymbols 1.2.0.*
r-cluster 2.1.0.*
r-codetools 0.2_16.*
r-colorspace 1.4_1.*
r-commonmark 1.7.*
r-covr 3.3.2.*
r-crayon 1.3.4.*
r-crosstalk 1.0.0.*
r-curl 4.2.*
r-desc 1.2.0.*
r-devtools 2.2.1.*
r-dplyr 0.8.3.*
r-ellipsis 0.3.0.*
r-evaluate 0.14.*
r-fansi 0.4.0.*
r-fastmap 1.0.1.*
r-foreach 1.4.7.*
r-fs 1.3.1.*
r-ggplot2 3.2.1.*
r-gh 1.0.1.*
r-git2r 0.26.1.*
r-glmnet 2.0_18.*
r-glue 1.3.1.*
r-gtable 0.3.0.*
r-htmltools 0.4.0.*
r-htmlwidgets 1.5.1.*
r-httpuv 1.5.2.*
r-httr 1.4.1.*
r-huge 1.3.4.*
r-igraph 1.2.4.1.*
r-ini 0.3.1.*
r-iterators 1.0.12.*
r-jsonlite 1.6.*
r-labeling 0.3.*
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r-mass 7.3_51.4.*
r-matrix 1.2_17.*
r-memoise 1.1.0.*
r-mgcv 1.8_29.*
r-mime 0.7.*
r-munsell 0.5.0.*
r-nlme 3.1_141.*
r-openssl 1.4.1.*
r-permute 0.9_5.*
r-pillar 1.4.2.*
r-pkgbuild 1.0.6.*
r-pkgconfig 2.0.3.*
r-pkgload 1.0.2.*
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r-remotes 2.1.0.*
r-reshape2 1.4.3.*
r-rex 1.1.2.*
r-rlang 0.4.1.*
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r-scales 1.0.0.*
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r-shape 1.4.4.*
r-sourcetools 0.1.7.*
r-stringr 1.4.0.*
r-survival 2.44_1.1.*
r-sys 3.3.*
r-testthat 2.2.1.*
r-tibble 2.1.3.*
r-tidyselect 0.2.5.*
r-usethis 1.5.1.*
r-utf8 1.1.4.*
r-vctrs 0.2.0.*
r-vegan 2.5_6.*
r-vgam 1.1_1.*
r-viridislite 0.3.0.*
r-xml2 1.2.2.*
r-xopen 1.0.0.*
r-yaml 2.2.0.*
r-zeallot 0.1.0.*
readline 7.0.*
requests 2.22.0.*
ruamel_yaml 0.15.46.*
setuptools 41.4.0.*
six 1.12.0.*
sqlite 3.30.0.*
synapseclient 1.9.4.*
tini 0.18.0.*
urllib3 1.24.2.*
wheel 0.33.6.*
xorg-libxau 1.0.9.*
xorg-libxdmcp 1.1.3.*
xz 5.2.4.*
yaml 0.1.7.*
zlib 1.2.11.*
zstd 1.4.3.*

docker/Dockerfile docker

continuumio/miniconda3 4.7.12 build