Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: conda: gfortran_impl_linux-64
7 versions
Latest release: about 2 years ago
View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/gfortran_impl_linux-64
Dependent Repos 103
rjof/coronavirus_dashboard_mexico
Fork of https://github.com/RamiKrispin/coronavirus_dashboard with minimal tweaks for Mexico- 7.3.0 environment.yml
Size: 12.8 MB - Last synced: 5 months ago - Pushed: over 1 year ago
rjof/rjof.github.io
Personal projects- 7.3.0 docs/environment.yml
- 7.3.0 environment.yml
Size: 38.5 MB - Last synced: 5 months ago - Pushed: over 1 year ago
ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)- 7.3.0 containers/qiime2-2019.10/environment.yml
- 7.3.0 containers/r-3.6.1/environment.yml
Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago
FORCOLAB-UofT/INFOX
This is a prototype for overview of GitHub forks.- 7.2.0 environment.yaml
Size: 14.3 MB - Last synced: 2 months ago - Pushed: 3 months ago
brucemoran/tumour_only
Tumour-only DNA sequencing analysis- 7.5.0 environment.yaml
Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
btmartin721/ClineHelpR
Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables- 9.3.0 environment.yml
Size: 93.4 MB - Last synced: 7 months ago - Pushed: almost 2 years ago
mrsergazinov/gluformer
The official implementation of the paper "Gluformer: Transformer-Based Personalized Glucose Forecasting with Uncertainty Quantification."- 7.3.0 environment.yml
Size: 75.8 MB - Last synced: 2 months ago - Pushed: about 1 year ago
Keegan-Humphrey/MATHUSLA-Kalman-Algorithm
The most recent iteration of offline tracking and analysis code for the MATHUSLA Collaboration. https://mathusla-experiment.web.cern.ch/- 7.5.0 env/environment.yml
Size: 7.45 MB - Last synced: 2 months ago - Pushed: 9 months ago
CMSHZUpsilonPhoton/HZUpsilonPhotonRun2NanoAOD
H/Z --> Upsilon + Photon - Run2 NanoAOD- 10.3.0.* environment.yml
Size: 8.56 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
afuentri/B-MyRepCLL
pipeline for a consensus-oriented analysis of B-cell clones- 7.3.0 environment.yml
Size: 291 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
casrssk/WGS-analysis-in-C_trachomatis
- 7.3.0 linux/sample/envs/environment.yml
Size: 7.39 MB - Last synced: 5 months ago - Pushed: about 2 years ago
WCRP-CMIP/WGCM_Infrastructure_Panel
Open repository for the WCRP WGCM Infrastructure Panel (WIP)- 9.3.0 environment.yml
Size: 8.78 MB - Last synced: 7 months ago - Pushed: 12 months ago
EpiDiverse/wgbs
The EpiDiverse Whole Genome Bisulfite Sequencing Pipeline, implemented with Nextflow- 7.5.0.* env/environment.yml
Size: 31.4 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
villegar/xxii-simmac
XXII SIMMAC (International Symposium on Mathematical Methods Applied to Sciences) - University of Costa Rica- 7.3.0.* environment.yml
Size: 11.4 MB - Last synced: 10 months ago - Pushed: almost 3 years ago
russHyde/russ-hyde
Public content for my blog- 9.3.0.* conda/environment.yaml
- 7.3.0.* envs/environment.yaml
Size: 5.17 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
luisacusick/VC-Optimus
Bioinformatics pipeline to take short reads, align them to a reference, and call SNPs.- 7.3.0 environment.yml
Size: 138 KB - Last synced: about 1 year ago - Pushed: about 3 years ago
lfnothias/qiime2
- 7.5.0.* environment.yml
Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
YeoLab/MINES
(m)6A (I)dentification Using (N)anopor(E) (S)equencing- 7.3.0 environment.yml
Size: 8.46 MB - Last synced: 13 days ago - Pushed: over 3 years ago
aleksha/prm
A joint project (PRES and AMBER) for proton radius measurement- 7.3.0 external/environment.yml
Size: 133 KB - Last synced: about 1 year ago - Pushed: about 3 years ago
mskcc/ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI- 7.2.0.* environment.yaml
Size: 276 MB - Last synced: 15 days ago - Pushed: over 1 year ago
vaqm2/custom_gwas
Python Code using CyVCF2 to run custom GWAS models on imputed VCF files- 10.3.0.* environment.yml
Size: 958 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
broadinstitute/malaria-amplicon-pipeline
- 7.5.0.* environment.yml
Size: 171 KB - Last synced: about 1 year ago - Pushed: about 1 year ago
moj-analytical-services/DefCalc
The deflator calculator.- 7.3.0 environment.yml
Size: 4.83 MB - Last synced: 10 months ago - Pushed: 10 months ago
evoosa/16S_bacteria_detector
Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms- 7.5.0 src/environment.yml
Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
Wiselab2/NGPINT
- 7.3.0 environment.yml
Size: 300 MB - Last synced: 7 months ago - Pushed: over 2 years ago
edotau/fishingcluster
- 7.5.0 workflows/atacseq/environment.yml
Size: 3.74 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
davidecolla/semantic_coherence_markers
- 7.3.0 environment.yml
Size: 390 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
kutaslab/fitgrid
Multichannel event-related time-series regression modeling for EEG, MEG, and sensor array data- 9.3.0 binder/environment.yml
Size: 124 MB - Last synced: 8 days ago - Pushed: over 1 year ago
web-mev/mev-edgeR
Implementation of Bioconductor's edgeR for basic differential gene expression analysis- 9.3.0 docker/environment.yml
Size: 18.6 KB - Last synced: about 1 month ago - Pushed: 4 months ago
web-mev/mev-normalize
- 7.5.0 docker/environment.yml
Size: 16.6 KB - Last synced: about 1 month ago - Pushed: 4 months ago
liaoherui/StrainScan
High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers- 7.5.0 environment.yaml
Size: 56.7 MB - Last synced: 18 days ago - Pushed: about 2 months ago
nlm-irp-jianglab/Evolink
:palm_tree: A Phylogenetic Approach for Rapid Identification of Genotype-Phenotype Associations in Large-scale Microbial Multi-species Data- 9.4.0 environment.yml
Size: 251 MB - Last synced: 10 months ago - Pushed: 10 months ago
GWeindel/lecture_R
A really short introduction (4 hours lecture) for psychology doctoral students at Aix Marseille University.- 9.3.0 environment.yml
Size: 4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
apratimbhattacharyya18/nerf
- 7.3.0 environment.yml
Size: 491 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
dahjan/DMS_opt
- 7.3.0 environment.yml
Size: 7.82 MB - Last synced: 7 months ago - Pushed: over 3 years ago
happykhan/journal
Citation lists- 10.3.0 environment.yml
Size: 28 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
ajayago/NCMF_bioinformatics
- 7.3.0 CMF/environment.yml
Size: 202 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
EpiDiverse/snp
The EpiDiverse Bisulfite SNP-Calling and Methylation Clustering Pipeline, implemented with Nextflow- 7.5.0.* env/environment.yml
Size: 600 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
moj-analytical-services/rshiny-template
Template RShiny project- 7.2.0 environment.yml
Size: 73.2 KB - Last synced: 3 months ago - Pushed: over 1 year ago
yangmqglobe/dapipe
自动化的 ATAC-Seq 分析流程- 9.4.0.* environment.yml
Size: 193 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
andrealauria104/ngsRtools
A Suite of R Packages for NGS-based Epigenomic Data Analysis.- 7.3.0.* data/environment.yml
Size: 714 KB - Last synced: about 1 month ago - Pushed: about 1 year ago
sadamov/pollenmaps
Creating some nice maps in R- 9.4.0 environment.yml
Size: 79.6 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
bokulich-lab/advanced-comp-bio-tutorial
Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022- 9.4.0 environment.yml
Size: 77.9 MB - Last synced: 12 months ago - Pushed: 12 months ago
Colorado-State-University-CMB/Intro-to-qCMB-2022
Class work for Intro to qCMB- 10.3.0 R_on_Summit/environment.yml
Size: 31.4 MB - Last synced: 2 months ago - Pushed: over 1 year ago
XinyanHe/INFOX Fork of FORCOLAB-UofT/INFOX
This is a prototype for overview of GitHub forks.- 7.2.0 environment.yaml
Size: 12.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
SERVIR/mekong-swat-django
- 10.3.0 environment.yml
Size: 1.58 MB - Last synced: 2 months ago - Pushed: over 1 year ago
sadamov/phenology_curve_fitting
Fitting of phenological season description curves to historical pollen measurements.- 9.4.0 environment.yml
Size: 53.1 MB - Last synced: over 1 year ago - Pushed: over 1 year ago
omicsclass/biodocker
docker images for bioinformatics- 7.5.0.* ampliseq-q2/environment.yml
Size: 59.2 MB - Last synced: 12 months ago - Pushed: over 1 year ago
russHyde/code_as_data
Analysis of code in R dev packages (for a planned talk)- 9.3.0.* conda/environment.yml
Size: 295 KB - Last synced: 3 months ago - Pushed: 7 months ago
jiangweiyao/RefNAAP
Reference based Nanopore assembly analysis pipeline- 9.3.0.* environment.yml
Size: 76.4 MB - Last synced: about 1 month ago - Pushed: about 3 years ago
sadamov/CHAPo
Automatic Pollen Project in Switzerland - Implementation of Real-Time Data into Prognistic Model COSMO- 9.3.0 environment.yml
Size: 51.5 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
russHyde/mast-shiny
Notes / code from working through "Mastering Shiny". Written while running a R4DS bookclub- 9.3.0.* conda/environment.yml
Size: 154 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago
vfonsecad/multivariate_calibration
Multivariate calibration algorithms for regression in chemometrics- 7.3.0 environment.yml
Size: 126 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
wrightdw/COG-UK-ME
COG-UK Mutation Explorer- 9.3.0 environment.yml
Size: 105 MB - Last synced: 4 months ago - Pushed: 4 months ago
kevinpryan/caf-subtype-analysis
- 10.3.0 environment.yml
Size: 56.9 MB - Last synced: 8 months ago - Pushed: 8 months ago
wiltbemj/SWSS-MagStructureLab
Materials for the Space Weather Summer School Lab on Exploring the Structure of the Magnetosphere- 11.2.0 environment.yml
Size: 16.7 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow- 10.3.0 environment.yml
Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
ws500981/sequence-polishing
- 10.3.0 environment.yml
Size: 25.5 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
vios-s/Diff-SCM
Code for Diff-SCM paper- 7.3.0.* environment.yml
Size: 185 KB - Last synced: 10 months ago - Pushed: 12 months ago
gonzalosm98/scRNA-SeqAnalysis
- 9.4.0 environment.yml
Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
NatPombubpa/Qiime2_2022.8_binder
Qiime2_2022.8_binder test- 12.1.0.* environment.yml
Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago
KomBioMol/gamma_rotation
Small package to compute angle of gamma rotation in ATP synthase (and similar cases) using optimal rotation matrix.- 7.5.0.* environment.yml
Last synced: over 1 year ago
cjc77/Fogg-Lab-RNA-Seq-analysis
Preliminary analysis and informatics for TCGA gynecological cancer data- 9.3.0.* environment.yml
Size: 61.3 MB - Last synced: 4 months ago - Pushed: over 1 year ago
dwlmt/story-fragments
Models to experiment with story understanding and generation tasks using embedding based knowledgebase and memory representations.- 7.3.0 environment.yaml
Size: 310 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
EpiDiverse/dmr
The EpiDiverse Differentially Methylated Regions Pipeline, implemented with Nextflow- 7.5.0.* env/environment.yml
Size: 1.41 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
nshadskiy/TauFakeFactors
Implementation of FakeFactor calculation with pyROOT.- 10.4.0 environment.yaml
Size: 221 KB - Last synced: 7 months ago - Pushed: 8 months ago
Augustocmb/cmblss
most- 9.4.0 environment.yml
Size: 33.8 MB - Last synced: 9 months ago - Pushed: 9 months ago
Skiracer33/stancon2019
notebook for stancon2019- 7.3.0 environment.yml
Size: 4.43 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
RacimoLab/simGL
Simulate genotype likelihoods from tree sequence data- 9.4.0 notebook/environment.yml
Size: 2.19 MB - Last synced: 11 months ago - Pushed: over 1 year ago
dieterich-lab/ImmunOMICS
- 12.2.0 environment.yml
Size: 27.6 MB - Last synced: 2 months ago - Pushed: about 1 year ago
sgvaze/generalized-category-discovery
Code for our CVPR 2022 paper 'Generalized Category Discovery'. Project page: https://www.robots.ox.ac.uk/~vgg/research/gcd/- 7.3.0 environment.yml
Size: 3.63 MB - Last synced: about 1 month ago - Pushed: over 1 year ago
computational-chemical-biology/cis_reg
- 10.4.0 environment.yml
Size: 16.2 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
liaoherui/GDmicro
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.- 7.5.0 environment.yaml
Size: 3.57 MB - Last synced: 4 days ago - Pushed: 2 months ago
gagneurlab/transmicron
- 9.4.0.* environment.yml
Size: 16.7 MB - Last synced: 17 days ago - Pushed: over 1 year ago
clemente-lab/mmeds-meta
A database for storing and analyzing omics data- 9.4.0 docs/environment.yml
Size: 890 MB - Last synced: 2 months ago - Pushed: 3 months ago
samwitham/PromoterArchitecture
Arabidopsis thaliana promoter architecture analysis pipeline- 7.5.0 environment.yml
Size: 187 MB - Last synced: 7 months ago - Pushed: 10 months ago
SteMIDIfactory/P-DOR
Quick and easy outbreak reconstruction pipeline- 10.3.0 environment.yml
Size: 37.7 MB - Last synced: 3 months ago - Pushed: 8 months ago
oscarlr/IGenotyper
- 7.3.0 environment.yml
Size: 10.2 MB - Last synced: 3 months ago - Pushed: 3 months ago
mjaquiery/genetics-snakemake
Snakemake workflow for handling PRS scores and relatedness calculations for human genetic data from ALSPAC.- 12.2.0 workflow/envs/environment.yaml
Size: 1.44 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
phbradley/tcr-gwas
Collaboration to find genetic variation associated with TCR repertoire differences- 9.3.0 environment.yml
Size: 176 MB - Last synced: about 1 month ago - Pushed: over 2 years ago
duncanberger/nxf-BATQual
Bacterial genome assembly, annotation and typing pipeline.- 12.2.0 environment.yaml
Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago
magdalenarussell/mechanistic-trimming
Collaboration to identify sequence-level determinants of nucleotide trimming during V(D)J recombination- 12.1.0 environment.yml
Size: 187 MB - Last synced: 9 days ago - Pushed: 9 days ago
MikhailovBair/breath-detection
Breath detection for data science section of BestHack- 7.3.0 environment.yml
Size: 32 MB - Last synced: 5 months ago - Pushed: about 3 years ago
carolina-vg/sics-endo
Single-cell sequencing of the proliferative endometrium- 7.5.0 environment.yml
Size: 18.6 MB - Last synced: 10 months ago - Pushed: about 3 years ago
jacobschwan/conda-rstudio
RStudio Server with conda pacakge management- 7.3.0 environment.yml
Size: 22.5 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago
davehadley/trex 📦
Standalone T-Rex TPC Reconstruction algorithms- 7.5.0 environment.yml
Size: 3.69 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
gw-odw/odw-2018
Software for Open Data Workshop 2018- 7.3.0 environment.yml
Size: 21.1 MB - Last synced: 6 days ago - Pushed: 6 days ago
neavemj/mappd
Metagenomic Analysis Pipeline for Pathogen Discovery- 7.3.0 environment.yaml
Size: 924 KB - Last synced: 8 months ago - Pushed: 8 months ago
russHyde/bfx_201909
Statistical Bioinformatics presentation- 7.3.0.* envs/environment.yml
Size: 327 KB - Last synced: about 1 year ago - Pushed: over 4 years ago
andurill/ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI- 7.2.0.* environment.yaml
Size: 276 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
gw-odw/odw-2020
Software tutorials for GW Open Data Workshop #3- 7.3.0 environment.yml
Size: 20.4 MB - Last synced: about 1 month ago - Pushed: over 3 years ago