r-testthat | conda | Package Usage

ome/omero-guide-r

2.1.* binder/environment.yml

Size: 2.01 MB - Last synced: about 1 month ago - Pushed: about 1 year ago

brucemoran/tumour_only

Tumour-only DNA sequencing analysis

3.0.2 environment.yaml

Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

btmartin721/ClineHelpR

Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables

3.0.4 environment.yml

Size: 93.4 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

Nephrology-CPM/CRPMdatatools

Data Tools for the Center of Renal Precision Medicine

environment.yml

Size: 666 KB - Last synced: 7 months ago - Pushed: over 2 years ago

morrislab/qapa

RNA-seq Quantification of Alternative Polyadenylation

environment.yml

Size: 2.79 MB - Last synced: 7 months ago - Pushed: 11 months ago

villegar/DoGE

Differential Gene Expression Analysis Pipeline

2.1.1.* environment.yml

Size: 16 MB - Last synced: 10 months ago - Pushed: almost 3 years ago

russHyde/russ-hyde

Public content for my blog

2.1.1.* envs/environment.yaml

Size: 5.17 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

lfnothias/qiime2

3.0.0.* environment.yml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

UBC-DSCI/predict-airbnb-nightly-price

3.1.2.* environment.yml

Size: 839 KB - Last synced: about 1 year ago - Pushed: about 2 years ago

stianlagstad/chimeraviz

chimeraviz is an R package that automates the creation of chimeric RNA visualizations.

environment.yml

Size: 2.9 MB - Last synced: 27 days ago - Pushed: 6 months ago

krinsman/dissertation

Source code and Jupyter notebooks related to PhD dissertation.

3.0.2 environment.yml

Last synced: over 1 year ago

vaqm2/custom_gwas

Python Code using CyVCF2 to run custom GWAS models on imputed VCF files

3.1.4.* environment.yml

Size: 958 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago

moj-analytical-services/DefCalc

The deflator calculator.

2.3.2 environment.yml

Size: 4.83 MB - Last synced: 10 months ago - Pushed: 10 months ago

evoosa/16S_bacteria_detector

Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms

2.3.2 src/environment.yml

Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

kutaslab/fitgrid

Multichannel event-related time-series regression modeling for EEG, MEG, and sensor array data

3.0.2 binder/environment.yml

Size: 124 MB - Last synced: 25 days ago - Pushed: over 1 year ago

web-mev/mev-normalize

3.0.1 docker/environment.yml

Size: 16.6 KB - Last synced: 20 days ago - Pushed: 3 months ago

liaoherui/StrainScan

High-resolution strain-level microbiome composition analysis tool based on reference genomes and k-mers

3.1.1 environment.yaml

Size: 56.7 MB - Last synced: 6 days ago - Pushed: about 1 month ago

nlm-irp-jianglab/Evolink

:palm_tree: A Phylogenetic Approach for Rapid Identification of Genotype-Phenotype Associations in Large-scale Microbial Multi-species Data

3.1.4 environment.yml

Size: 251 MB - Last synced: 9 months ago - Pushed: 9 months ago

GWeindel/lecture_R

A really short introduction (4 hours lecture) for psychology doctoral students at Aix Marseille University.

3.0.2 environment.yml

Size: 4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

happykhan/journal

Citation lists

3.1.4 environment.yml

Size: 28 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

AliMirlou/repo2docker Fork of jupyterhub/repo2docker

Modified version of Repo2Docker to address the needed customizations of @RoboEpics

tests/conda/r3.6/environment.yml

Size: 2.66 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

quadram-institute-bioscience/dadaist2

Dadaist2 🟨 Highway to R

3.0.4 lab/class/environment.yml

Size: 39.4 MB - Last synced: 3 months ago - Pushed: 3 months ago

kelly-sovacool/meta-repo

A meta-repository to organize my public projects.

2.3.0 config/environment.yml

Size: 33.2 MB - Last synced: 9 months ago - Pushed: 9 months ago

vjayaman/Metrics-CGM-ECC

documentation/environment.yml

Size: 114 MB - Last synced: about 17 hours ago - Pushed: almost 2 years ago

jamesfitton/cxr

Intertidal water occurrence generator from Sentinel 2 satellite data and Google Earth Engine

3.1.4 environment.yml

Size: 1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

yangmqglobe/dapipe

自动化的 ATAC-Seq 分析流程

3.0.2.* environment.yml

Size: 193 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

brucemoran/somatic_n-of-1

Somatic-Germline n-of-1 DNAseq Analysis

environment.yaml

Size: 317 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

sadamov/pollenmaps

Creating some nice maps in R

3.0.4 environment.yml

Size: 79.6 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

bokulich-lab/advanced-comp-bio-tutorial

Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022

3.1.0 environment.yml

Size: 77.9 MB - Last synced: 12 months ago - Pushed: 12 months ago

Bernt/MITOS

MITOS

3.0.4.* environment.yaml

Last synced: 14 days ago

SERVIR/mekong-swat-django

3.1.4 environment.yml

Size: 1.58 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

jtilly/matchingR

Algorithms for Matching Markets in R and C++

environment.yml

Size: 2.8 MB - Last synced: 5 months ago - Pushed: over 1 year ago

sadamov/phenology_curve_fitting

Fitting of phenological season description curves to historical pollen measurements.

3.1.1 environment.yml

Size: 53.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

omicsclass/biodocker

docker images for bioinformatics

2.3.2.* ampliseq-q2/environment.yml

Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago

russHyde/mast-shiny

Notes / code from working through "Mastering Shiny". Written while running a R4DS bookclub

3.0.1.* conda/environment.yml

Size: 154 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

greenelab/2022-cf-sputum

Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways

3.0.2 environment.yml

Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago

Antobiotics/repo2docker Fork of jupyterhub/repo2docker

Turn repositories into Jupyter-enabled Docker images

tests/conda/r3.6/environment.yml

Size: 3.09 MB - Last synced: 3 months ago - Pushed: 3 months ago

krinsman/droplets

3.0.3 environment.yml

Last synced: over 1 year ago

kirbyvisp/marmo

MARMO is a Modular and Robust pipeline for iMmune single-cell multi-Omics implemented in Snakemake.

1.0.2 environment.yaml

Size: 2.86 MB - Last synced: over 1 year ago

wrightdw/COG-UK-ME

COG-UK Mutation Explorer

3.0.2 environment.yml

Size: 105 MB - Last synced: 3 months ago - Pushed: 3 months ago

data-analysis5/phenotypes/process.phenotypes

automated phenotype standardization and reporting

environment.yaml

Last synced: over 1 year ago

kevinpryan/caf-subtype-analysis

3.1.4 environment.yml

Size: 56.9 MB - Last synced: 8 months ago - Pushed: 8 months ago

mr-eyes/denovo-rnaseq

De novo assembly, Differential gene expression, and annotation workflow

3.1.4 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

IDR/idr0094-ellinger-sarscov2

2.1.* binder/environment.yml

Size: 4.45 MB - Last synced: 21 days ago - Pushed: 7 months ago

gonzalosm98/scRNA-SeqAnalysis

3.1.2 environment.yml

Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

NatPombubpa/Qiime2_2022.8_binder

Qiime2_2022.8_binder test

3.1.4.* environment.yml

Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago

rahulbhatiak/aml

Files / Projects/ Notebooks relating to Advanced Machine Learning Course taken Fall 2020

2.3.2 environment.yaml

Last synced: about 1 year ago

tools_n_things/ezdata

Provides some convenience functions for getting/pushing data.

environment.yaml

Last synced: over 1 year ago

cjc77/Fogg-Lab-RNA-Seq-analysis

Preliminary analysis and informatics for TCGA gynecological cancer data

3.0.1.* environment.yml

Size: 61.3 MB - Last synced: 4 months ago - Pushed: over 1 year ago

SchlossLab/severe-CDI

Predicting CDI severity from OTUs

workflow/envs/environment.yml

Size: 275 MB - Last synced: 12 days ago - Pushed: 10 months ago

EpiDiverse/dmr

The EpiDiverse Differentially Methylated Regions Pipeline, implemented with Nextflow

2.3.2.* env/environment.yml

Size: 1.41 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

athompson1991/crypto-project

Final project for machine learning class

2.0.0 environment.yml

Size: 1.68 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

yacchin1205/repo2docker Fork of jupyterhub/repo2docker

Turn repositories into Jupyter enabled Docker Images

tests/conda/r3.6/environment.yml

Size: 3.32 MB - Last synced: 29 days ago - Pushed: about 1 month ago

liaoherui/GDmicro

GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.

3.0.2 environment.yaml

Size: 3.57 MB - Last synced: 22 days ago - Pushed: about 2 months ago

gagneurlab/transmicron

3.1.4.* environment.yml

Size: 16.7 MB - Last synced: 5 days ago - Pushed: over 1 year ago

clemente-lab/mmeds-meta

A database for storing and analyzing omics data

3.0.4 docs/environment.yml

Size: 890 MB - Last synced: about 2 months ago - Pushed: 3 months ago

samwitham/PromoterArchitecture

Arabidopsis thaliana promoter architecture analysis pipeline

2.3.2 environment.yml

Size: 187 MB - Last synced: 7 months ago - Pushed: 9 months ago

SteMIDIfactory/P-DOR

Quick and easy outbreak reconstruction pipeline

2.3.2 environment.yml

Size: 37.7 MB - Last synced: 3 months ago - Pushed: 8 months ago

paezha/PyERT-BLACK

Capstone project for course 4G06

3.1.4 environment.yml

Size: 23.2 MB - Last synced: 10 days ago - Pushed: about 1 year ago

phbradley/tcr-gwas

Collaboration to find genetic variation associated with TCR repertoire differences

3.0.2 environment.yml

Size: 176 MB - Last synced: 26 days ago - Pushed: over 2 years ago

magdalenarussell/mechanistic-trimming

Collaboration to identify sequence-level determinants of nucleotide trimming during V(D)J recombination

3.1.4 environment.yml

Size: 185 MB - Last synced: 19 days ago - Pushed: 19 days ago

bballew/process.phenotypes

Forked from https://gitlab.com/data-analysis5/phenotypes/process.phenotypes

environment.yaml

Size: 4.16 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

lightning-auriga/process.phenotypes

automated phenotype standardization and reporting

environment.yaml

Size: 4.29 MB - Last synced: 9 months ago - Pushed: 9 months ago

russHyde/bfx_201909

Statistical Bioinformatics presentation

2.2.1.* envs/environment.yml

Size: 327 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

EpiDiverse/ewas

The EpiDiverse Epigenome-Wide Association Study Pipeline, implemented with Nextflow

3.0.2.* env/environment.yml

Size: 20.9 MB - Last synced: 7 months ago - Pushed: about 1 year ago

IanSudbery/alvarez_et_al

Code and other scripts for Alvarez-Beneyas et al 2020

2.3.2 environment.yml

Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago

dpryan79/kiwanisbewegt

Automatic participant map generation for kiwanisbewegt

3.0.2 environment.yaml

Size: 19.4 MB - Last synced: 9 months ago - Pushed: about 2 years ago

storm-platform/storm-gallery

A gallery of interesting codes based on Storm Platform technologies.

3.1.2.* applications/bdc-article/compendium/environment.yml
3.1.2.* applications/deforestation-detection/compendium/fraction-classification/environment.yml
3.1.2.* applications/sits-article/compendium/environment.yml

Size: 42.7 MB - Last synced: 23 days ago - Pushed: over 1 year ago

maizeumn/grn

Maize Gene regulatory network (MaizeGRN)

3.0.0.* environment.yml

Size: 24.1 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

joaopalmeiro/r-playground

Some experiments with R.

3.0.1.* clifford-attractor/environment.yml

Size: 4.08 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago

giorgioangel/evc

Official repository of the paper "An Offline Risk-aware Policy Selection Method for Bayesian Markov Decision Processes"

3.1.2 environment.yml

Size: 58.6 KB - Last synced: 9 months ago - Pushed: almost 2 years ago

yangmqglobe/depipe

自动化的 ChIP-Seq 分析流程

3.0.2.* environment.yml

Size: 16.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

nerettilab/scRNA_seq

Utilities scripts for the analysis of single cell transcriptomics

3.0.1 environment.yml

Size: 23.4 KB - Last synced: 5 months ago - Pushed: almost 3 years ago

AbeelLab/long-read-assembly-benchmark

3.1.5 environment.yml

Size: 7.68 MB - Last synced: 28 days ago - Pushed: over 1 year ago

mwang87/GNPS_Volatility_Notebooks

2.3.2.* environment.yml

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

zia-foisal/reproducible_drought_index

A repository to practice reproducible research practices while studing the state of the drought around the world

3.1.4 environment.yaml

Size: 10.7 KB - Last synced: 12 months ago - Pushed: over 1 year ago

OakCityLabs/callisto-r

3.1.4.* environment.yml

Size: 109 KB - Last synced: 9 months ago - Pushed: 11 months ago

achmand/datascience-brexit

Case-study set out to statistically test whether any Brexit major event has an impact on various ﬁnancial markets

2.0.0 src/environment.yml

Size: 13.8 MB - Last synced: about 1 year ago - Pushed: almost 5 years ago

zdk123/SpiecEasiSLR_manuscript

Code to fetch data and reproduce figures for _Disentangling microbial associations from hidden environmental and technical factors via latent graphical models_