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GitHub / MichelleBadri / NormCorr-manuscript
Code and data for reproducing NormCorr manuscript
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MichelleBadri%2FNormCorr-manuscript
Stars: 2
Forks: 1
Open Issues: 0
License: None
Language: R
Repo Size: 106 KB
Dependencies:
165
Created: about 4 years ago
Updated: over 1 year ago
Last pushed: about 4 years ago
Last synced: about 1 year ago
Files
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Readme
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Dependencies
docker/environment.yml
conda
- bioconductor-biobase 2.46.0.*
- bioconductor-biocgenerics 0.32.0.*
- bioconductor-biomformat 1.14.0.*
- bioconductor-biostrings 2.54.0.*
- bioconductor-deseq2 1.26.0.*
- bioconductor-iranges 2.20.0.*
- bioconductor-metagenomeseq 1.28.0-0.*
- bioconductor-multtest 2.42.0.*
- bioconductor-phyloseq 1.30.0.*
- bioconductor-rhdf5 2.30.0.*
- bioconductor-rhdf5lib 1.8.0.*
- bioconductor-s4vectors 0.24.0.*
- bioconductor-scran 1.14.1.*
- bioconductor-vsn 3.54.0.*
- bioconductor-wrench 1.4.0.*
- bioconductor-xvector 0.26.0.*
- bioconductor-zlibbioc 1.32.0.*
- bwidget 1.9.14.*
- bzip2 1.0.8.*
- cffi 1.13.2.*
- chardet 3.0.4.*
- cryptography 2.8.*
- curl 7.65.3.*
- fontconfig 2.13.1.*
- freetype 2.10.0.*
- fribidi 1.0.5.*
- gettext 0.19.8.1.*
- graphite2 1.3.13.*
- harfbuzz 2.4.0.*
- icu 64.2.*
- idna 2.8.*
- libcurl 7.65.3.*
- libedit 3.1.20181209.*
- libffi 3.2.1.*
- ncurses 6.1.*
- openblas 0.3.7.*
- openssl 1.1.1c.*
- pango 1.42.4.*
- pcre 8.43.*
- pip
- pixman 0.38.0.*
- pthread-stubs 0.4.*
- pycosat 0.6.3.*
- pycparser 2.19.*
- r-ade4 1.7_13.*
- r-ape 5.3.*
- r-askpass 1.1.*
- r-assertthat 0.2.1.*
- r-backports 1.1.5.*
- r-base 3.6.2.*
- r-brew 1.0_6.*
- r-callr 3.4.0.*
- r-circlize 0.4.8.*
- r-cli 2.0.1.*
- r-clipr 0.7.0.*
- r-clisymbols 1.2.0.*
- r-cluster 2.1.0.*
- r-codetools 0.2_16.*
- r-commonmark 1.7.*
- r-corpcor 1.6.9.*
- r-covr 3.4.0.*
- r-crayon 1.3.4.*
- r-crosstalk 1.0.0.*
- r-curl 4.3.*
- r-data.table 1.12.8.*
- r-dendextend 1.13.2.*
- r-desc 1.2.0.*
- r-devtools 2.2.1.*
- r-doparallel 1.0.15.*
- r-dplyr 0.8.3.*
- r-ellipsis 0.3.0.*
- r-evaluate 0.14.*
- r-fansi 0.4.1.*
- r-fastmap 1.0.1.*
- r-foreach 1.4.7.*
- r-fs 1.3.1.*
- r-geigen 2.3.*
- r-ggplot2 3.2.1.*
- r-ggridges 0.5.2.*
- r-gh 1.0.1.*
- r-git2r 0.26.1.*
- r-glmnet 3.0_2.*
- r-glue 1.3.1.*
- r-gtable 0.3.0.*
- r-hexbin 1.28.0.*
- r-htmltools 0.4.0.*
- r-htmlwidgets 1.5.1.*
- r-httpuv 1.5.2.*
- r-httr 1.4.1.*
- r-huge 1.3.4.*
- r-igraph 1.2.4.2.*
- r-ini 0.3.1.*
- r-iterators 1.0.12.*
- r-jsonlite 1.6.*
- r-labeling 0.3.*
- r-later 1.0.0.*
- r-mass 7.3_51.5.*
- r-matrix 1.2_18.*
- r-matrixcalc 1.0_3.*
- r-memoise 1.1.0.*
- r-mgcv 1.8_31.*
- r-mime 0.8.*
- r-munsell 0.5.0.*
- r-nlme 3.1_143.*
- r-openssl 1.4.1.*
- r-paralleldist 0.2.4.*
- r-permute 0.9_5.*
- r-pillar 1.4.3.*
- r-pkgbuild 1.0.6.*
- r-pkgconfig 2.0.3.*
- r-pkgload 1.0.2.*
- r-plogr 0.2.0.*
- r-plotly 4.9.1.*
- r-propr 4.2.6.*
- r-ps 1.3.0.*
- r-pulsar 0.3.6.*
- r-r6 2.4.1.*
- r-rcmdcheck 1.3.3.*
- r-rcpp 1.0.3.*
- r-rcpparmadillo 0.9.800.3.0.*
- r-rcppeigen 0.3.3.7.0.*
- r-rcppxptrutils 0.1.1
- r-remotes 2.1.0.*
- r-reshape 0.8.8.*
- r-reshape2 1.4.3.*
- r-rex 1.1.2.*
- r-rlang 0.4.2.*
- r-rversions 2.0.1.*
- r-scales 1.1.0.*
- r-sessioninfo 1.1.1.*
- r-shape 1.4.4.*
- r-sourcetools 0.1.7.*
- r-spieceasi 1.0.7.*
- r-stringi 1.4.3.*
- r-stringr 1.4.0.*
- r-survival 3.1_8.*
- r-sys 3.3.*
- r-testthat 2.3.1.*
- r-tibble 2.1.3.*
- r-tidyselect 0.2.5.*
- r-upsetr 1.4.0.*
- r-usethis 1.5.1.*
- r-utf8 1.1.4.*
- r-vctrs 0.2.1.*
- r-vegan 2.5_6.*
- r-venndiagram 1.6.20.*
- r-vgam 1.1_2.*
- r-viridislite 0.3.0.*
- r-xml2 1.2.2.*
- r-xopen 1.0.0.*
- r-xtable 1.8_4.*
- r-yaml 2.2.0.*
- r-zeallot 0.1.0.*
- readline 8.0.*
- requests 2.22.0.*
- ruamel_yaml 0.15.80.*
- setuptools 45.0.0.*
- six 1.14.0.*
- sqlite 3.30.1.*
- synapseclient 1.9.4.*
- xz 5.2.4.*
- yaml 0.2.2.*
- zlib 1.2.11.*
- zstd 1.4.4.*
docker/Dockerfile
docker
- continuumio/miniconda3 4.7.12 build