r-xtable | conda | Package Usage

rjof/coronavirus_dashboard_mexico

Fork of https://github.com/RamiKrispin/coronavirus_dashboard with minimal tweaks for Mexico

1.8_4 environment.yml

Size: 12.8 MB - Last synced: 5 months ago - Pushed: over 1 year ago

rjof/rjof.github.io

Personal projects

1.8_4 docs/environment.yml
1.8_4 environment.yml

Size: 38.5 MB - Last synced: 5 months ago - Pushed: over 1 year ago

ifremer-bioinformatics/samba

Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

1.8_4 containers/r-3.6.1/environment.yml

Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago

FORCOLAB-UofT/INFOX

This is a prototype for overview of GitHub forks.

1.8_2 environment.yaml

Size: 14.3 MB - Last synced: 2 months ago - Pushed: 3 months ago

nixiwang/PISAnalysisTool

An analysis tool of multi-level modeling for PISA dataset

1.8_3 environment.yml

Size: 44.1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

brucemoran/tumour_only

Tumour-only DNA sequencing analysis

1.8_4 environment.yaml

Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

btmartin721/ClineHelpR

Detects Outliers and plots genomic clines from BGC output, and extends the plotting functionality of INTROGRESS to Correlate genomic clines and hybrid indices with Environmental Variables

1.8_4 environment.yml

Size: 93.4 MB - Last synced: 7 months ago - Pushed: almost 2 years ago

jseeman/publication-supplements

Code and data for research replication and reuse

1.8_4 2022_arsia/environment.yaml

Size: 511 KB - Last synced: about 1 year ago - Pushed: about 2 years ago

villegar/DoGE

Differential Gene Expression Analysis Pipeline

1.8_4.* environment.yml

Size: 16 MB - Last synced: 10 months ago - Pushed: almost 3 years ago

SantanderMetGroup/binder-atlas

1.8_4 binder/conda/environment.yml

Size: 18.6 KB - Last synced: about 1 month ago - Pushed: 11 months ago

russHyde/russ-hyde

Public content for my blog

1.8_4.* envs/environment.yaml

Size: 5.17 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

InfantLab/little-drummers

1.8_4 analysis/environment.yml

Size: 1.04 GB - Last synced: about 1 year ago - Pushed: almost 2 years ago

BioinfoNet/TeachingJupyterNotebooks

Training materials for the Open Science Workshop held in Nariobi

1.8_2 environment.yml

Size: 16 MB - Last synced: about 1 year ago - Pushed: over 5 years ago

moj-analytical-services/DefCalc

The deflator calculator.

1.8_4 environment.yml

Size: 4.83 MB - Last synced: 10 months ago - Pushed: 10 months ago

Wiselab2/NGPINT

1.8_0 environment.yml

Size: 300 MB - Last synced: 7 months ago - Pushed: over 2 years ago

davidecolla/semantic_coherence_markers

1.8_4 environment.yml

Size: 390 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

kutaslab/fitgrid

Multichannel event-related time-series regression modeling for EEG, MEG, and sensor array data

1.8_4 binder/environment.yml

Size: 124 MB - Last synced: 29 days ago - Pushed: over 1 year ago

davidlevybooth/Rhodococcus_Transcriptomics

Rhodococcus Transcriptomic Pipeline

1.8_2.* environment.yaml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: about 5 years ago

web-mev/mev-normalize

1.8_4 docker/environment.yml

Size: 16.6 KB - Last synced: 23 days ago - Pushed: 4 months ago

nlm-irp-jianglab/Evolink

:palm_tree: A Phylogenetic Approach for Rapid Identification of Genotype-Phenotype Associations in Large-scale Microbial Multi-species Data

1.8_4 environment.yml

Size: 251 MB - Last synced: 9 months ago - Pushed: 9 months ago

GWeindel/lecture_R

A really short introduction (4 hours lecture) for psychology doctoral students at Aix Marseille University.

1.8_4 environment.yml

Size: 4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

ajayago/NCMF_bioinformatics

1.8_4 CMF/environment.yml

Size: 202 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

moj-analytical-services/rshiny-template

Template RShiny project

1.8_2 environment.yml

Size: 73.2 KB - Last synced: 3 months ago - Pushed: over 1 year ago

kelly-sovacool/meta-repo

A meta-repository to organize my public projects.

1.8_4 config/environment.yml

Size: 33.2 MB - Last synced: 9 months ago - Pushed: 9 months ago

jamesfitton/cxr

Intertidal water occurrence generator from Sentinel 2 satellite data and Google Earth Engine

1.8_4 environment.yml

Size: 1 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

yangmqglobe/dapipe

自动化的 ATAC-Seq 分析流程

1.8_4.* environment.yml

Size: 193 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

aw236/boilerplate_code

best functions

1.8_4.* environment.yml

Size: 380 KB - Last synced: about 1 month ago - Pushed: 12 months ago

andrealauria104/ngsRtools

A Suite of R Packages for NGS-based Epigenomic Data Analysis.

1.8_4.* data/environment.yml

Size: 714 KB - Last synced: about 1 month ago - Pushed: about 1 year ago

brucemoran/somatic_n-of-1

Somatic-Germline n-of-1 DNAseq Analysis

environment.yaml

Size: 317 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

XinyanHe/INFOX Fork of FORCOLAB-UofT/INFOX

This is a prototype for overview of GitHub forks.

1.8_2 environment.yaml

Size: 12.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

russHyde/mast-shiny

Notes / code from working through "Mastering Shiny". Written while running a R4DS bookclub

1.8_4.* conda/environment.yml

Size: 154 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

greenelab/2022-cf-sputum

Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways

1.8_4 environment.yml

Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago

Abraham-newbie/Replication

Replication of Barrera et. al. and further extension.

environment.yml

Size: 16.7 MB - Last synced: 11 months ago - Pushed: almost 2 years ago

naim-panjwani/LocusFocus

Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)

1.8_4 environments/environment.yml

Size: 76.7 MB - Last synced: 7 days ago - Pushed: about 1 year ago

kevinpryan/caf-subtype-analysis

1.8_4 environment.yml

Size: 56.9 MB - Last synced: 8 months ago - Pushed: 8 months ago

mr-eyes/denovo-rnaseq

De novo assembly, Differential gene expression, and annotation workflow

1.8_4 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

gonzalosm98/scRNA-SeqAnalysis

1.8_4 environment.yml

Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

dib-lab/elvers

(formerly eelpond) an automated RNA-Seq workflow system

1.8_2.* elvers/rules/edgeR/environment.yml

Size: 106 MB - Last synced: 4 months ago - Pushed: over 3 years ago

LankyCyril/merip-seq-2019

1.8_4 environment.yaml

Size: 531 KB - Last synced: over 1 year ago

cjc77/Fogg-Lab-RNA-Seq-analysis

Preliminary analysis and informatics for TCGA gynecological cancer data

1.8_4.* environment.yml

Size: 61.3 MB - Last synced: 4 months ago - Pushed: over 1 year ago

mfreitas/docker_dev_image

1.8_3 environment.yml

Last synced: over 1 year ago

mfreitas/dsclub_jupyter

Jupyter docker image

1.8_3 environment.yml

Last synced: over 1 year ago

athompson1991/crypto-project

Final project for machine learning class

1.8_2 environment.yml

Size: 1.68 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

gagneurlab/transmicron

1.8_4.* environment.yml

Size: 16.7 MB - Last synced: 8 days ago - Pushed: over 1 year ago

samwitham/PromoterArchitecture

Arabidopsis thaliana promoter architecture analysis pipeline

1.8_4 environment.yml

Size: 187 MB - Last synced: 7 months ago - Pushed: 9 months ago

paezha/PyERT-BLACK

Capstone project for course 4G06

1.8_4 environment.yml

Size: 23.2 MB - Last synced: 13 days ago - Pushed: about 1 year ago

phbradley/tcr-gwas

Collaboration to find genetic variation associated with TCR repertoire differences

1.8_4 environment.yml

Size: 176 MB - Last synced: 29 days ago - Pushed: over 2 years ago

magdalenarussell/mechanistic-trimming

Collaboration to identify sequence-level determinants of nucleotide trimming during V(D)J recombination

1.8_4 environment.yml

Size: 185 MB - Last synced: 23 days ago - Pushed: 23 days ago

doku/actions_test

1.8_4 environment.yml

Size: 2.19 MB - Last synced: 9 months ago - Pushed: over 3 years ago

jacobschwan/conda-rstudio

RStudio Server with conda pacakge management

1.8_4 environment.yml

Size: 22.5 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

russHyde/bfx_201909

Statistical Bioinformatics presentation

1.8_4.* envs/environment.yml

Size: 327 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

AmirAlavi/sc-alignment-benchmarking

Supporting data and benchmarking software for our SCIPR paper. (Under Construction)

1.8_4 data/environment.yml

Size: 45.6 MB - Last synced: 10 months ago - Pushed: almost 4 years ago

marinatalantceva/epp22-23-final_project

Final project for the Effective Programming class

environment.yml

Size: 79.5 MB - Last synced: about 1 month ago - Pushed: about 1 year ago

IanSudbery/alvarez_et_al

Code and other scripts for Alvarez-Beneyas et al 2020

1.8_4 environment.yml

Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago

mapcloud/phusion-jupyterlab

1.8_2 environment.yml

Size: 4.88 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago

micaelamccall/nonverbal-behavior-FA

Habits of Non-verbal Intimacy: reducing number of dimensions using factor analysis

1.8_4 environment.yml

Size: 17.1 MB - Last synced: 7 months ago - Pushed: over 4 years ago

vfonov/re_mtl

environment.yml

Size: 16.2 MB - Last synced: about 1 year ago - Pushed: about 4 years ago

davidlevybooth/Praxis

1.8_2.* envs/environment.yaml

Size: 137 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

joaopalmeiro/r-playground

Some experiments with R.

1.8_4.* clifford-attractor/environment.yml

Size: 4.08 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

alexetalbott/python_analysis_demo

a brief analysis of dummy delivery data in Python with Folium maps

1.8_4 environment.yml

Size: 1.22 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago

giorgioangel/evc

Official repository of the paper "An Offline Risk-aware Policy Selection Method for Bayesian Markov Decision Processes"

1.8_4 environment.yml

Size: 58.6 KB - Last synced: 9 months ago - Pushed: almost 2 years ago

yangmqglobe/depipe

自动化的 ChIP-Seq 分析流程

1.8_4.* environment.yml

Size: 16.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

nerettilab/scRNA_seq

Utilities scripts for the analysis of single cell transcriptomics

1.8_4 environment.yml

Size: 23.4 KB - Last synced: 5 months ago - Pushed: almost 3 years ago

SystemsBiologist/PSCAN

1.8_4 environment.yml

Size: 14.2 MB - Last synced: about 1 month ago - Pushed: over 4 years ago

jhgille2/rna_seq_pipeline_template

WIP reproducible pipeline for rna seq differential expression analysis

1.8_4 environment.yml

Size: 77.1 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

achmand/datascience-brexit

Case-study set out to statistically test whether any Brexit major event has an impact on various ﬁnancial markets

1.8_2 src/environment.yml

Size: 13.8 MB - Last synced: about 1 year ago - Pushed: almost 5 years ago

qbicsoftware/r-container-lib

A collection of project-related Dockerfiles for a controlled R environment with defined R packages

1.8_2 projects/QTEST/environment.yml

Size: 150 KB - Last synced: 5 days ago - Pushed: about 3 years ago

RPVote/jhub-rstudio

build jupyterhub-ready image with rstudio

binder/environment.yml

Size: 52.7 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago

MichelleBadri/NormCorr-manuscript

Code and data for reproducing NormCorr manuscript

1.8_4.* docker/environment.yml

Size: 106 KB - Last synced: about 1 year ago - Pushed: about 4 years ago

GallupGovt/ngs2

DARPA Next Generation Social Science (NGS2)

1.8_4 cycle3/Boomtown/Analysis/environment.yaml
1.8_4 cycle4/Boomtown/Analysis/environment.yaml

Size: 32.8 MB - Last synced: 8 months ago - Pushed: 12 months ago

crlero/snakemake-tutorial

1.8_4.* handson/workflow/environment.yaml

Size: 3.39 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

web-mev/mev-lrt

DESeq2 implementation of likelihood ratio test

1.8_4 docker/environment.yml

Size: 12.7 KB - Last synced: 23 days ago - Pushed: 3 months ago

Scripts related to publication: Calfee E, Gates D, Lorant A, Perkins MT, Coop G, Ross-Ibarra J (2021). Selective sorting of ancestral introgression in maize and teosinte along an elevational cline. bioRxiv. https://www.biorxiv.org/content/10.1101/2021.03.05.434040v1