Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub / ecalfee / hilo
Scripts related to publication: Calfee E, Gates D, Lorant A, Perkins MT, Coop G, Ross-Ibarra J (2021). Selective sorting of ancestral introgression in maize and teosinte along an elevational cline. bioRxiv. https://www.biorxiv.org/content/10.1101/2021.03.05.434040v1
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ecalfee%2Fhilo
Stars: 3
Forks: 2
Open Issues: 0
License: None
Language: R
Repo Size: 2.57 MB
Dependencies:
53
Created: about 6 years ago
Updated: about 2 years ago
Last pushed: over 2 years ago
Last synced: 12 months ago
Files
Dependencies
- bcftools 1.9.*
- bedtools 2.29.0.*
- bioconductor-genomicranges 1.38.0.*
- bioconductor-iranges 2.20.0.*
- bowtie2 2.3.5.*
- bwa 0.7.17.*
- fastq-screen 0.14.0.*
- fastqc 0.11.6.*
- graphviz 2.42.3.*
- htslib 1.9.*
- jinja2 2.10.*
- matplotlib 3.2.1.*
- multiqc 1.7.*
- networkx 2.1.*
- pcangsd 0.98.2.*
- pysam 0.15.0.*
- python 3.6.*
- r-ade4 1.7_16.*
- r-base 3.6.2.*
- r-bedr 1.0.7.*
- r-boot 1.3_25.*
- r-corrplot 0.84.*
- r-cowplot 1.1.1.*
- r-data.table 1.12.8.*
- r-geodist 0.0.3.*
- r-geosphere 1.5_10.*
- r-ggpubr 0.3.0.*
- r-ggraph 2.0.4.*
- r-ggrastr 0.1.7.*
- r-ggupset 0.3.0.*
- r-gridextra 2.3.*
- r-igraph 1.2.6.*
- r-maps 3.3.0.*
- r-mass 7.3_53.*
- r-poibin 1.5.*
- r-pracma 2.2.9.*
- r-quantreg 5.55.*
- r-rcolorbrewer 1.1_2.*
- r-reader 1.0.6.*
- r-readxl 1.3.1.*
- r-reshape2 1.4.4.*
- r-rgbif 2.2.0.*
- r-scales 1.1.1.*
- r-seqinr 4.2_5.*
- r-tidygraph 1.2.0.*
- r-tidyverse 1.3.0.*
- r-viridis 0.5.1.*
- r-widyr 0.1.3.*
- r-xtable 1.8_4.*
- r-zoo 1.8_8.*
- samtools 1.9.*
- seqtk 1.3.*
- snakemake-minimal 5.17.0.*