Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: bioconductor-rhdf5

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/bioconductor-rhdf5

Dependent Repos 10

ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
  • 2.30.0 containers/r-3.6.1/environment.yml

Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago

brucemoran/tumour_only
Tumour-only DNA sequencing analysis
  • 2.34.0 environment.yaml

Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

brucemoran/RNAseq_kallisto
RNAseq with Kallisto
  • environment.yaml

Size: 52.7 KB - Last synced: about 1 year ago - Pushed: over 2 years ago

NWTlter/NWT_CLM
Workflow scripts for running point simulations of CLM at Niwot Ridge using Tvan forcing data
  • environment.yml

Size: 15.4 MB - Last synced: 2 months ago - Pushed: about 1 year ago

quadram-institute-bioscience/dadaist2
Dadaist2 🟨 Highway to R
  • 2.34.0 lab/class/environment.yml

Size: 39.4 MB - Last synced: 3 months ago - Pushed: 3 months ago

krinsman/droplets
  • 2.34.0 environment.yml

Last synced: over 1 year ago

gonzalosm98/scRNA-SeqAnalysis
  • 2.34.0 environment.yml

Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

adelemusa/met_pipeline
  • 2.28.0 environment.yml

Last synced: over 1 year ago

liaoherui/GDmicro
GDmicro - Use GCN and Deep adaptation network to classify host disease status based on human gut microbiome data.
  • 2.30.0 environment.yaml

Size: 3.57 MB - Last synced: 23 days ago - Pushed: about 2 months ago

gagneurlab/transmicron
  • 2.38.0.* environment.yml

Size: 16.7 MB - Last synced: 5 days ago - Pushed: over 1 year ago

lkmklsmn/DrivAER
DrivAER: Identification of Driving transcriptional programs using AutoEncoder based Relevance scores
  • 2.30.0 environment.yml

Size: 116 MB - Last synced: 7 months ago - Pushed: over 3 years ago

IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020
  • 2.28.0 environment.yml

Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago

nichollskc/E-GEOD-60424
Pre-processing of RNA-seq data from sorted blood cell populations
  • environment.yml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

nasiegel88/2021-geo_datasets-gse149758
Single-cell analysis on control animals from Esaulova et al., 2021 Cell Host Microbe
  • 2.38.1 environment.yml

Size: 118 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

zdk123/SpiecEasiSLR_manuscript
Code to fetch data and reproduce figures for _Disentangling microbial associations from hidden environmental and technical factors via latent graphical models_
  • 2.30.0.* docker/environment.yml

Size: 190 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

MichelleBadri/NormCorr-manuscript
Code and data for reproducing NormCorr manuscript
  • 2.30.0.* docker/environment.yml

Size: 106 KB - Last synced: about 1 year ago - Pushed: about 4 years ago

crlero/snakemake-tutorial
  • 2.38.0.* handson/workflow/environment.yaml

Size: 3.39 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

TeamPerie/Report_Daphne Fork of dvginneken/Reproduce_Thesis_InstitutCurie
  • 2.42.0 environment.yml

Size: 32.6 MB - Last synced: 10 months ago - Pushed: 10 months ago

elisa-vancleemput/NWT_CLM Fork of NWTlter/NWT_CLM
Workflow scripts for running point simulations of CLM at Niwot Ridge using Tvan forcing data
  • environment.yml

Size: 13.2 MB - Last synced: 29 days ago - Pushed: over 2 years ago

Mye-InfoBank/SIMBA
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.
  • 2.46.1 docker/rpy/environment.yml

Size: 981 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

quevedor2/mini_projects
Repository for mini projects that don't warrant a repo of their own
  • 2.34.0 PDAC_AhR/envs/environment.yaml

Size: 657 KB - Last synced: 11 days ago - Pushed: 12 days ago

hds-sandbox/transcriptomics_app_ucloud
Development of the transcriptomics app based on Rstudio for UCloud
  • scripts/environment.yml

Size: 7.42 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

PixelgenTechnologies/pixelatorR
Library for analysis of Molecular Pixelation data in R (Pixelgen Technologies AB)
  • environment.yml

Size: 11 MB - Last synced: about 1 month ago - Pushed: about 1 month ago