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GitHub / brucemoran / RNAseq_kallisto
RNAseq with Kallisto
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/brucemoran%2FRNAseq_kallisto
Stars: 0
Forks: 0
Open Issues: 1
License: None
Language: Nextflow
Repo Size: 52.7 KB
Dependencies:
31
Created: over 4 years ago
Updated: over 3 years ago
Last pushed: almost 3 years ago
Last synced: about 1 year ago
Files
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Dependencies
environment.yaml
conda
- bbmap 38.57.*
- bioconductor-biobase
- bioconductor-biomart
- bioconductor-deseq2
- bioconductor-edger
- bioconductor-fgsea
- bioconductor-gsva
- bioconductor-limma
- bioconductor-rhdf5
- fastp 0.20.0.*
- fastqc 0.11.8.*
- gxx_linux-64
- kallisto 0.46.0.*
- libiconv 1.16.*
- multiqc 1.7.*
- python 3.7.3.*
- r-base 3.6.1.*
- r-devtools
- r-dplyr
- r-ggplot2
- r-ggrepel
- r-gridextra
- r-magrittr
- r-matrixstats
- r-msigdbr
- r-readr
- r-remotes
- r-sleuth
- r-tibble
- r-tidyr
- r-venndiagram