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GitHub / hmartiniano / go_genes_semsim_parallel
R script to calculate a gene semantic similarity matrix for approved HGNC genes using the GOSemSim package
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/hmartiniano%2Fgo_genes_semsim_parallel
Stars: 0
Forks: 0
Open Issues: 0
License: gpl-3.0
Language: R
Repo Size: 19.5 KB
Dependencies:
72
Created: about 5 years ago
Updated: 11 months ago
Last pushed: 11 months ago
Last synced: 8 months ago
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Dependencies
environment.yml
conda
- _libgcc_mutex 0.1
- _r-mutex 1.0.0
- binutils_impl_linux-64 2.31.1
- binutils_linux-64 2.31.1
- bioconductor-annotationdbi 1.46.0
- bioconductor-biobase 2.44.0
- bioconductor-biocgenerics 0.30.0
- bioconductor-go.db 3.8.2
- bioconductor-gosemsim 2.10.0
- bioconductor-iranges 2.18.2
- bioconductor-org.hs.eg.db 3.8.2
- bioconductor-s4vectors 0.22.0
- bwidget 1.9.11
- bzip2 1.0.8
- ca-certificates 2019.10.16
- cairo 1.14.12
- curl 7.65.3
- fontconfig 2.13.0
- freetype 2.9.1
- fribidi 1.0.5
- gcc_impl_linux-64 7.3.0
- gcc_linux-64 7.3.0
- gfortran_impl_linux-64 7.3.0
- gfortran_linux-64 7.3.0
- glib 2.56.2
- graphite2 1.3.13
- gsl 2.4
- gxx_impl_linux-64 7.3.0
- gxx_linux-64 7.3.0
- harfbuzz 1.8.8
- icu 58.2
- jpeg 9b
- krb5 1.16.1
- libcurl 7.65.3
- libedit 3.1.20181209
- libffi 3.2.1
- libgcc-ng 9.1.0
- libgfortran-ng 7.3.0
- libpng 1.6.37
- libssh2 1.8.2
- libstdcxx-ng 9.1.0
- libtiff 4.0.10
- libuuid 1.0.3
- libxcb 1.13
- libxml2 2.9.9
- make 4.2.1
- ncurses 6.1
- openssl 1.1.1d
- pango 1.42.4
- pcre 8.43
- pixman 0.38.0
- r-assertthat 0.2.1
- r-base 3.6.1
- r-bh 1.69.0_1
- r-bit 1.1_14
- r-bit64 0.9_7
- r-blob 1.1.1
- r-dbi 1.0.0
- r-digest 0.6.18
- r-magrittr 1.5
- r-memoise 1.1.0
- r-pkgconfig 2.0.2
- r-plogr 0.2.0
- r-prettyunits 1.0.2
- r-rcpp 1.0.1
- r-rsqlite 2.1.1
- readline 7.0
- tk 8.6.8
- tktable 2.10
- xz 5.2.4
- zlib 1.2.11
- zstd 1.3.7