Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
Package Usage: conda: r-bitops
2 versions
Latest release: over 1 year ago
8 dependent packages
View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/r-bitops
Dependent Repos 49
rjof/coronavirus_dashboard_mexico
Fork of https://github.com/RamiKrispin/coronavirus_dashboard with minimal tweaks for Mexico- 1.0_6 environment.yml
Size: 12.8 MB - Last synced: 5 months ago - Pushed: over 1 year ago
rjof/rjof.github.io
Personal projects- 1.0_6 docs/environment.yml
- 1.0_6 environment.yml
Size: 38.5 MB - Last synced: 5 months ago - Pushed: over 1 year ago
ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)- 1.0_6 containers/qiime2-2019.10/environment.yml
- 1.0_6 containers/r-3.6.1/environment.yml
Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago
brucemoran/tumour_only
Tumour-only DNA sequencing analysis- 1.0_7 environment.yaml
Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
casrssk/WGS-analysis-in-C_trachomatis
- 1.0_6 linux/sample/envs/environment.yml
Size: 7.39 MB - Last synced: 4 months ago - Pushed: about 2 years ago
jseeman/publication-supplements
Code and data for research replication and reuse- 1.0_6 2022_arsia/environment.yaml
Size: 511 KB - Last synced: about 1 year ago - Pushed: about 2 years ago
villegar/DoGE
Differential Gene Expression Analysis Pipeline- 1.0_6.* environment.yml
Size: 16 MB - Last synced: 10 months ago - Pushed: almost 3 years ago
russHyde/russ-hyde
Public content for my blog- 1.0_6.* envs/environment.yaml
Size: 5.17 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
oceanhackweek/jupyter-image
jupyter-image- r/environment.yml
Size: 728 KB - Last synced: 28 days ago - Pushed: 9 months ago
luisacusick/VC-Optimus
Bioinformatics pipeline to take short reads, align them to a reference, and call SNPs.- 1.0_6 environment.yml
Size: 138 KB - Last synced: about 1 year ago - Pushed: about 3 years ago
lfnothias/qiime2
- 1.0_6.* environment.yml
Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
mskcc/ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI- 1.0_6.* environment.yaml
Size: 276 MB - Last synced: 2 days ago - Pushed: over 1 year ago
krinsman/dissertation
Source code and Jupyter notebooks related to PhD dissertation.- 1.0_6 environment.yml
Last synced: over 1 year ago
BioinfoNet/TeachingJupyterNotebooks
Training materials for the Open Science Workshop held in Nariobi- 1.0_6 environment.yml
Size: 16 MB - Last synced: about 1 year ago - Pushed: over 5 years ago
broadinstitute/malaria-amplicon-pipeline
- 1.0_7.* environment.yml
Size: 171 KB - Last synced: about 1 year ago - Pushed: about 1 year ago
moj-analytical-services/DefCalc
The deflator calculator.- 1.0_6 environment.yml
Size: 4.83 MB - Last synced: 10 months ago - Pushed: 10 months ago
evoosa/16S_bacteria_detector
Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms- 1.0_6 src/environment.yml
Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
Wiselab2/NGPINT
- 1.0_6 environment.yml
Size: 300 MB - Last synced: 7 months ago - Pushed: over 2 years ago
davidlevybooth/Rhodococcus_Transcriptomics
Rhodococcus Transcriptomic Pipeline- 1.0_6.* environment.yaml
Size: 21.5 KB - Last synced: about 1 year ago - Pushed: about 5 years ago
web-mev/mev-normalize
- 1.0_6 docker/environment.yml
Size: 16.6 KB - Last synced: 20 days ago - Pushed: 3 months ago
ColtonGarelli/notebooks2020
- 1.0_6.* environment.yml
Size: 20.5 KB - Last synced: 2 months ago - Pushed: almost 4 years ago
quadram-institute-bioscience/dadaist2
Dadaist2 đš Highway to R- 1.0_7 lab/class/environment.yml
Size: 39.4 MB - Last synced: 3 months ago - Pushed: 3 months ago
kelly-sovacool/meta-repo
A meta-repository to organize my public projects.- 1.0_6 config/environment.yml
Size: 33.2 MB - Last synced: 9 months ago - Pushed: 9 months ago
yangmqglobe/dapipe
èȘćšćç ATAC-Seq ćææ”çš- 1.0_6.* environment.yml
Size: 193 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
aw236/boilerplate_code
best functions- 1.0_6.* environment.yml
Size: 380 KB - Last synced: 27 days ago - Pushed: 12 months ago
andrealauria104/ngsRtools
A Suite of R Packages for NGS-based Epigenomic Data Analysis.- 1.0_6.* data/environment.yml
Size: 714 KB - Last synced: 27 days ago - Pushed: about 1 year ago
bokulich-lab/advanced-comp-bio-tutorial
Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022- 1.0_7 environment.yml
Size: 77.9 MB - Last synced: 12 months ago - Pushed: 12 months ago
Colorado-State-University-CMB/Intro-to-qCMB-2022
Class work for Intro to qCMB- 1.0_7 R_on_Summit/environment.yml
Size: 31.4 MB - Last synced: about 2 months ago - Pushed: over 1 year ago
SERVIR/mekong-swat-django
- 1.0_7 environment.yml
Size: 1.58 MB - Last synced: about 2 months ago - Pushed: over 1 year ago
omicsclass/biodocker
docker images for bioinformatics- 1.0_6.* ampliseq-q2/environment.yml
Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago
greenelab/2022-cf-sputum
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways- 1.0_7 environment.yml
Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago
kirbyvisp/marmo
MARMO is a Modular and Robust pipeline for iMmune single-cell multi-Omics implemented in Snakemake.- 1.0_6 environment.yaml
Size: 2.86 MB - Last synced: over 1 year ago
naim-panjwani/LocusFocus
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)- 1.0_6 environments/environment.yml
Size: 76.7 MB - Last synced: 4 days ago - Pushed: about 1 year ago
kevinpryan/caf-subtype-analysis
- 1.0_7 environment.yml
Size: 56.9 MB - Last synced: 8 months ago - Pushed: 8 months ago
mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow- 1.0_7 environment.yml
Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
gonzalosm98/scRNA-SeqAnalysis
- 1.0_7 environment.yml
Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
dib-lab/elvers
(formerly eelpond) an automated RNA-Seq workflow system- 1.0_6.* elvers/rules/edgeR/environment.yml
Size: 106 MB - Last synced: 4 months ago - Pushed: over 3 years ago
NatPombubpa/Qiime2_2022.8_binder
Qiime2_2022.8_binder test- 1.0_7.* environment.yml
Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago
acc-bioinfo/ACC-environment
Conda environment and docker recipe that contains all software and libraries used for the ACC projects.- 1.0_6 environment.yml
Last synced: over 1 year ago
EpiDiverse/dmr
The EpiDiverse Differentially Methylated Regions Pipeline, implemented with Nextflow- 1.0_6.* env/environment.yml
Size: 1.41 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
gagneurlab/transmicron
- 1.0_7.* environment.yml
Size: 16.7 MB - Last synced: 5 days ago - Pushed: over 1 year ago
lkmklsmn/DrivAER
DrivAER: Identification of Driving transcriptional programs using AutoEncoder based Relevance scores- 1.0_6 environment.yml
Size: 116 MB - Last synced: 7 months ago - Pushed: over 3 years ago
phbradley/tcr-gwas
Collaboration to find genetic variation associated with TCR repertoire differences- 1.0_7 environment.yml
Size: 176 MB - Last synced: 26 days ago - Pushed: over 2 years ago
magdalenarussell/mechanistic-trimming
Collaboration to identify sequence-level determinants of nucleotide trimming during V(D)J recombination- 1.0_7 environment.yml
Size: 185 MB - Last synced: 19 days ago - Pushed: 19 days ago
russHyde/bfx_201909
Statistical Bioinformatics presentation- 1.0_6.* envs/environment.yml
Size: 327 KB - Last synced: about 1 year ago - Pushed: over 4 years ago
andurill/ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI- 1.0_6.* environment.yaml
Size: 276 MB - Last synced: about 1 year ago - Pushed: over 2 years ago
AmirAlavi/sc-alignment-benchmarking
Supporting data and benchmarking software for our SCIPR paper. (Under Construction)- 1.0_6 data/environment.yml
Size: 45.6 MB - Last synced: 10 months ago - Pushed: almost 4 years ago
IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020- 1.0_6 environment.yml
Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago
mapcloud/phusion-jupyterlab
- 1.0_6 environment.yml
Size: 4.88 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago
MikeTrizna/binder-qiime
Testing if qiime can be installed and used in Binder- 1.0_6.* environment.yml
Size: 6.84 KB - Last synced: about 2 months ago - Pushed: about 5 years ago
nasiegel88/airquality
- 1.0_7 environment.yml
Size: 1.06 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
maizeumn/grn
Maize Gene regulatory network (MaizeGRN)- 1.0_6.* environment.yml
Size: 24.1 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
vfonov/re_mtl
- environment.yml
Size: 16.2 MB - Last synced: about 1 year ago - Pushed: about 4 years ago
davidlevybooth/Praxis
- 1.0_6.* envs/environment.yaml
Size: 137 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
joaopalmeiro/r-playground
Some experiments with R.- 1.0_6.* clifford-attractor/environment.yml
Size: 4.08 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago
yangmqglobe/depipe
èȘćšćç ChIP-Seq ćææ”çš- 1.0_7.* environment.yml
Size: 16.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
asdcid/Genome_Assembly_Assessment
- 1.0_6 environment.yml
Size: 39.4 MB - Last synced: about 1 year ago - Pushed: over 4 years ago
nerettilab/scRNA_seq
Utilities scripts for the analysis of single cell transcriptomics- 1.0_6 environment.yml
Size: 23.4 KB - Last synced: 5 months ago - Pushed: almost 3 years ago
JungeAlexander/rain
Pipeline generating the RAIN interaction files- 1.0_6 environment.yml
Size: 424 KB - Last synced: 9 months ago - Pushed: over 7 years ago
SystemsBiologist/PSCAN
- 1.0_6 environment.yml
Size: 14.2 MB - Last synced: about 1 month ago - Pushed: over 4 years ago
mwang87/GNPS_Volatility_Notebooks
- 1.0_6.* environment.yml
Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
jhgille2/rna_seq_pipeline_template
WIP reproducible pipeline for rna seq differential expression analysis- 1.0_7 environment.yml
Size: 77.1 KB - Last synced: about 1 year ago - Pushed: about 1 year ago
qbicsoftware/r-container-lib
A collection of project-related Dockerfiles for a controlled R environment with defined R packages- 1.0_6 projects/QTEST/environment.yml
Size: 150 KB - Last synced: 1 day ago - Pushed: about 3 years ago
RPVote/jhub-rstudio
build jupyterhub-ready image with rstudio- binder/environment.yml
Size: 52.7 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago
daewoooo/IntegrativePhasingPaper
Supplementary files for the study "Dense and accurate whole-chromosome haplotyping of individual genomes"- 1.0_6 environment.yml
Size: 7.65 MB - Last synced: 2 days ago - Pushed: over 6 years ago
crlero/snakemake-tutorial
- 1.0_7.* handson/workflow/environment.yaml
Size: 3.39 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago
web-mev/mev-lrt
DESeq2 implementation of likelihood ratio test- 1.0_7 docker/environment.yml
Size: 12.7 KB - Last synced: 20 days ago - Pushed: 3 months ago
Jacobog02/Maslenlab_Thesis
Thesis code repository for analysis of Illumina Bisulfite Sequencing data.- 1.0_6.* env/environment.yml
Size: 2.25 MB - Last synced: about 1 year ago - Pushed: over 3 years ago
Dayueban/ampliseq Fork of nf-core/ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2- 1.0_6.* environment.yml
Size: 229 KB - Last synced: 10 months ago - Pushed: about 5 years ago
TeamPerie/Report_Daphne Fork of dvginneken/Reproduce_Thesis_InstitutCurie
- 1.0_7 environment.yml
Size: 32.6 MB - Last synced: 10 months ago - Pushed: 10 months ago
davidecarlson/Snakemake_diff_gene_expr
Differential Gene Expression with Snakemake- 1.0_6 environment.yml
Size: 37.1 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago
yarikoptic/example-notebooks-1 Fork of dandi/example-notebooks
- 1.0_7 000039/AllenInstitute/environment.yml
Size: 16.1 MB - Last synced: 10 months ago - Pushed: 10 months ago
ministryofjustice/occupeye-shiny-app
âą This repository is defined and managed in Terraform- 1.0_6 environment.yml
Size: 488 KB - Last synced: about 1 month ago - Pushed: 6 months ago
robert-altwasser/umi-processing
- 1.0_7 env/environment.yml
Size: 340 KB - Last synced: 5 months ago - Pushed: 6 months ago
Mye-InfoBank/SIMBA
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.- 1.0_7 docker/rpy/environment.yml
Size: 981 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
fdu-wangfeilab/stDiff
A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.- 1.0_7 environment.yml
Size: 268 MB - Last synced: 29 days ago - Pushed: 2 months ago
quevedor2/mini_projects
Repository for mini projects that don't warrant a repo of their own- 1.0_7 PDAC_AhR/envs/environment.yaml
Size: 657 KB - Last synced: 11 days ago - Pushed: 12 days ago
WenfeiY/P.patens_geno_design
Python and R script for Physcomitrium patens genome design- 1.0_7 environment.yml
Size: 865 KB - Last synced: about 2 months ago - Pushed: about 2 months ago
is-the-biologist/QC_long_reads
- 1.0_7 workflow/envs/environment.yml
Size: 157 MB - Last synced: 17 days ago - Pushed: 17 days ago
alipirani88/snpkit
Modular workflow for Microbial Variant Calling and SNP diagnostics.- 1.0_7 envs/environment.yml
Size: 61.8 MB - Last synced: 7 days ago - Pushed: 8 days ago
a-hr/pol2speed_pipeline
- 1.0_7 environment.yaml
Size: 15.9 MB - Last synced: 7 days ago - Pushed: 7 days ago
dandi/example-notebooks
- 1.0_7 000039/AllenInstitute/environment.yml
Size: 57.5 MB - Last synced: about 12 hours ago - Pushed: about 13 hours ago