Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: r-bitops


2 versions
Latest release: over 1 year ago
8 dependent packages

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/r-bitops

Dependent Repos 49

rjof/coronavirus_dashboard_mexico
Fork of https://github.com/RamiKrispin/coronavirus_dashboard with minimal tweaks for Mexico
  • 1.0_6 environment.yml

Size: 12.8 MB - Last synced: 5 months ago - Pushed: over 1 year ago

rjof/rjof.github.io
Personal projects
  • 1.0_6 docs/environment.yml
  • 1.0_6 environment.yml

Size: 38.5 MB - Last synced: 5 months ago - Pushed: over 1 year ago

ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
  • 1.0_6 containers/qiime2-2019.10/environment.yml
  • 1.0_6 containers/r-3.6.1/environment.yml

Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago

brucemoran/tumour_only
Tumour-only DNA sequencing analysis
  • 1.0_7 environment.yaml

Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

casrssk/WGS-analysis-in-C_trachomatis
  • 1.0_6 linux/sample/envs/environment.yml

Size: 7.39 MB - Last synced: 4 months ago - Pushed: about 2 years ago

jseeman/publication-supplements
Code and data for research replication and reuse
  • 1.0_6 2022_arsia/environment.yaml

Size: 511 KB - Last synced: about 1 year ago - Pushed: about 2 years ago

villegar/DoGE
Differential Gene Expression Analysis Pipeline
  • 1.0_6.* environment.yml

Size: 16 MB - Last synced: 10 months ago - Pushed: almost 3 years ago

russHyde/russ-hyde
Public content for my blog
  • 1.0_6.* envs/environment.yaml

Size: 5.17 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

oceanhackweek/jupyter-image
jupyter-image
  • r/environment.yml

Size: 728 KB - Last synced: 28 days ago - Pushed: 9 months ago

luisacusick/VC-Optimus
Bioinformatics pipeline to take short reads, align them to a reference, and call SNPs.
  • 1.0_6 environment.yml

Size: 138 KB - Last synced: about 1 year ago - Pushed: about 3 years ago

lfnothias/qiime2
  • 1.0_6.* environment.yml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

mskcc/ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI
  • 1.0_6.* environment.yaml

Size: 276 MB - Last synced: 2 days ago - Pushed: over 1 year ago

krinsman/dissertation
Source code and Jupyter notebooks related to PhD dissertation.
  • 1.0_6 environment.yml

Last synced: over 1 year ago

BioinfoNet/TeachingJupyterNotebooks
Training materials for the Open Science Workshop held in Nariobi
  • 1.0_6 environment.yml

Size: 16 MB - Last synced: about 1 year ago - Pushed: over 5 years ago

broadinstitute/malaria-amplicon-pipeline
  • 1.0_7.* environment.yml

Size: 171 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

moj-analytical-services/DefCalc
The deflator calculator.
  • 1.0_6 environment.yml

Size: 4.83 MB - Last synced: 10 months ago - Pushed: 10 months ago

evoosa/16S_bacteria_detector
Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms
  • 1.0_6 src/environment.yml

Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

Wiselab2/NGPINT
  • 1.0_6 environment.yml

Size: 300 MB - Last synced: 7 months ago - Pushed: over 2 years ago

davidlevybooth/Rhodococcus_Transcriptomics
Rhodococcus Transcriptomic Pipeline
  • 1.0_6.* environment.yaml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: about 5 years ago

web-mev/mev-normalize
  • 1.0_6 docker/environment.yml

Size: 16.6 KB - Last synced: 20 days ago - Pushed: 3 months ago

ColtonGarelli/notebooks2020
  • 1.0_6.* environment.yml

Size: 20.5 KB - Last synced: 2 months ago - Pushed: almost 4 years ago

quadram-institute-bioscience/dadaist2
Dadaist2 🟹 Highway to R
  • 1.0_7 lab/class/environment.yml

Size: 39.4 MB - Last synced: 3 months ago - Pushed: 3 months ago

kelly-sovacool/meta-repo
A meta-repository to organize my public projects.
  • 1.0_6 config/environment.yml

Size: 33.2 MB - Last synced: 9 months ago - Pushed: 9 months ago

yangmqglobe/dapipe
è‡Ș抹挖的 ATAC-Seq ćˆ†æžæ”çš‹
  • 1.0_6.* environment.yml

Size: 193 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

aw236/boilerplate_code
best functions
  • 1.0_6.* environment.yml

Size: 380 KB - Last synced: 27 days ago - Pushed: 12 months ago

andrealauria104/ngsRtools
A Suite of R Packages for NGS-based Epigenomic Data Analysis.
  • 1.0_6.* data/environment.yml

Size: 714 KB - Last synced: 27 days ago - Pushed: about 1 year ago

bokulich-lab/advanced-comp-bio-tutorial
Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022
  • 1.0_7 environment.yml

Size: 77.9 MB - Last synced: 12 months ago - Pushed: 12 months ago

Colorado-State-University-CMB/Intro-to-qCMB-2022
Class work for Intro to qCMB
  • 1.0_7 R_on_Summit/environment.yml

Size: 31.4 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

SERVIR/mekong-swat-django
  • 1.0_7 environment.yml

Size: 1.58 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

omicsclass/biodocker
docker images for bioinformatics
  • 1.0_6.* ampliseq-q2/environment.yml

Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago

greenelab/2022-cf-sputum
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways
  • 1.0_7 environment.yml

Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago

kirbyvisp/marmo
MARMO is a Modular and Robust pipeline for iMmune single-cell multi-Omics implemented in Snakemake.
  • 1.0_6 environment.yaml

Size: 2.86 MB - Last synced: over 1 year ago

naim-panjwani/LocusFocus
Application of the Simple Sum method for testing co-localization of GWAS with any other SNP-level data (e.g. eQTL data)
  • 1.0_6 environments/environment.yml

Size: 76.7 MB - Last synced: 4 days ago - Pushed: about 1 year ago

kevinpryan/caf-subtype-analysis
  • 1.0_7 environment.yml

Size: 56.9 MB - Last synced: 8 months ago - Pushed: 8 months ago

mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow
  • 1.0_7 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

gonzalosm98/scRNA-SeqAnalysis
  • 1.0_7 environment.yml

Size: 62.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

dib-lab/elvers
(formerly eelpond) an automated RNA-Seq workflow system
  • 1.0_6.* elvers/rules/edgeR/environment.yml

Size: 106 MB - Last synced: 4 months ago - Pushed: over 3 years ago

NatPombubpa/Qiime2_2022.8_binder
Qiime2_2022.8_binder test
  • 1.0_7.* environment.yml

Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago

LankyCyril/merip-seq-2019
  • 1.0_6 environment.yaml

Size: 531 KB - Last synced: over 1 year ago

acc-bioinfo/ACC-environment
Conda environment and docker recipe that contains all software and libraries used for the ACC projects.
  • 1.0_6 environment.yml

Last synced: over 1 year ago

EpiDiverse/dmr
The EpiDiverse Differentially Methylated Regions Pipeline, implemented with Nextflow
  • 1.0_6.* env/environment.yml

Size: 1.41 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

gagneurlab/transmicron
  • 1.0_7.* environment.yml

Size: 16.7 MB - Last synced: 5 days ago - Pushed: over 1 year ago

lkmklsmn/DrivAER
DrivAER: Identification of Driving transcriptional programs using AutoEncoder based Relevance scores
  • 1.0_6 environment.yml

Size: 116 MB - Last synced: 7 months ago - Pushed: over 3 years ago

phbradley/tcr-gwas
Collaboration to find genetic variation associated with TCR repertoire differences
  • 1.0_7 environment.yml

Size: 176 MB - Last synced: 26 days ago - Pushed: over 2 years ago

magdalenarussell/mechanistic-trimming
Collaboration to identify sequence-level determinants of nucleotide trimming during V(D)J recombination
  • 1.0_7 environment.yml

Size: 185 MB - Last synced: 19 days ago - Pushed: 19 days ago

russHyde/bfx_201909
Statistical Bioinformatics presentation
  • 1.0_6.* envs/environment.yml

Size: 327 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

andurill/ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI
  • 1.0_6.* environment.yaml

Size: 276 MB - Last synced: about 1 year ago - Pushed: over 2 years ago

AmirAlavi/sc-alignment-benchmarking
Supporting data and benchmarking software for our SCIPR paper. (Under Construction)
  • 1.0_6 data/environment.yml

Size: 45.6 MB - Last synced: 10 months ago - Pushed: almost 4 years ago

IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020
  • 1.0_6 environment.yml

Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago

mapcloud/phusion-jupyterlab
  • 1.0_6 environment.yml

Size: 4.88 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago

MikeTrizna/binder-qiime
Testing if qiime can be installed and used in Binder
  • 1.0_6.* environment.yml

Size: 6.84 KB - Last synced: about 2 months ago - Pushed: about 5 years ago

nasiegel88/airquality
  • 1.0_7 environment.yml

Size: 1.06 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

maizeumn/grn
Maize Gene regulatory network (MaizeGRN)
  • 1.0_6.* environment.yml

Size: 24.1 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

vfonov/re_mtl
  • environment.yml

Size: 16.2 MB - Last synced: about 1 year ago - Pushed: about 4 years ago

davidlevybooth/Praxis
  • 1.0_6.* envs/environment.yaml

Size: 137 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

joaopalmeiro/r-playground
Some experiments with R.
  • 1.0_6.* clifford-attractor/environment.yml

Size: 4.08 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago

yangmqglobe/depipe
è‡Ș抹挖的 ChIP-Seq ćˆ†æžæ”çš‹
  • 1.0_7.* environment.yml

Size: 16.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

asdcid/Genome_Assembly_Assessment
  • 1.0_6 environment.yml

Size: 39.4 MB - Last synced: about 1 year ago - Pushed: over 4 years ago

nerettilab/scRNA_seq
Utilities scripts for the analysis of single cell transcriptomics
  • 1.0_6 environment.yml

Size: 23.4 KB - Last synced: 5 months ago - Pushed: almost 3 years ago

JungeAlexander/rain
Pipeline generating the RAIN interaction files
  • 1.0_6 environment.yml

Size: 424 KB - Last synced: 9 months ago - Pushed: over 7 years ago

SystemsBiologist/PSCAN
  • 1.0_6 environment.yml

Size: 14.2 MB - Last synced: about 1 month ago - Pushed: over 4 years ago

mwang87/GNPS_Volatility_Notebooks
  • 1.0_6.* environment.yml

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

jhgille2/rna_seq_pipeline_template
WIP reproducible pipeline for rna seq differential expression analysis
  • 1.0_7 environment.yml

Size: 77.1 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

qbicsoftware/r-container-lib
A collection of project-related Dockerfiles for a controlled R environment with defined R packages
  • 1.0_6 projects/QTEST/environment.yml

Size: 150 KB - Last synced: 1 day ago - Pushed: about 3 years ago

RPVote/jhub-rstudio
build jupyterhub-ready image with rstudio
  • binder/environment.yml

Size: 52.7 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago

daewoooo/IntegrativePhasingPaper
Supplementary files for the study "Dense and accurate whole-chromosome haplotyping of individual genomes"
  • 1.0_6 environment.yml

Size: 7.65 MB - Last synced: 2 days ago - Pushed: over 6 years ago

crlero/snakemake-tutorial
  • 1.0_7.* handson/workflow/environment.yaml

Size: 3.39 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

web-mev/mev-lrt
DESeq2 implementation of likelihood ratio test
  • 1.0_7 docker/environment.yml

Size: 12.7 KB - Last synced: 20 days ago - Pushed: 3 months ago

Jacobog02/Maslenlab_Thesis
Thesis code repository for analysis of Illumina Bisulfite Sequencing data.
  • 1.0_6.* env/environment.yml

Size: 2.25 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

Dayueban/ampliseq Fork of nf-core/ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
  • 1.0_6.* environment.yml

Size: 229 KB - Last synced: 10 months ago - Pushed: about 5 years ago

TeamPerie/Report_Daphne Fork of dvginneken/Reproduce_Thesis_InstitutCurie
  • 1.0_7 environment.yml

Size: 32.6 MB - Last synced: 10 months ago - Pushed: 10 months ago

davidecarlson/Snakemake_diff_gene_expr
Differential Gene Expression with Snakemake
  • 1.0_6 environment.yml

Size: 37.1 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

yarikoptic/example-notebooks-1 Fork of dandi/example-notebooks
  • 1.0_7 000039/AllenInstitute/environment.yml

Size: 16.1 MB - Last synced: 10 months ago - Pushed: 10 months ago

ministryofjustice/occupeye-shiny-app
‱ This repository is defined and managed in Terraform
  • 1.0_6 environment.yml

Size: 488 KB - Last synced: about 1 month ago - Pushed: 6 months ago

robert-altwasser/umi-processing
  • 1.0_7 env/environment.yml

Size: 340 KB - Last synced: 5 months ago - Pushed: 6 months ago

Mye-InfoBank/SIMBA
A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.
  • 1.0_7 docker/rpy/environment.yml

Size: 981 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

fdu-wangfeilab/stDiff
A novel method named stDiff investigates the potential of employing diffusion models for single-cell omics generation.
  • 1.0_7 environment.yml

Size: 268 MB - Last synced: 29 days ago - Pushed: 2 months ago

quevedor2/mini_projects
Repository for mini projects that don't warrant a repo of their own
  • 1.0_7 PDAC_AhR/envs/environment.yaml

Size: 657 KB - Last synced: 11 days ago - Pushed: 12 days ago

WenfeiY/P.patens_geno_design
Python and R script for Physcomitrium patens genome design
  • 1.0_7 environment.yml

Size: 865 KB - Last synced: about 2 months ago - Pushed: about 2 months ago

is-the-biologist/QC_long_reads
  • 1.0_7 workflow/envs/environment.yml

Size: 157 MB - Last synced: 17 days ago - Pushed: 17 days ago

alipirani88/snpkit
Modular workflow for Microbial Variant Calling and SNP diagnostics.
  • 1.0_7 envs/environment.yml

Size: 61.8 MB - Last synced: 7 days ago - Pushed: 8 days ago

a-hr/pol2speed_pipeline
  • 1.0_7 environment.yaml

Size: 15.9 MB - Last synced: 7 days ago - Pushed: 7 days ago

dandi/example-notebooks
  • 1.0_7 000039/AllenInstitute/environment.yml

Size: 57.5 MB - Last synced: about 12 hours ago - Pushed: about 13 hours ago