Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

Package Usage: conda: bioconductor-genomicalignments

View more package details: https://packages.ecosyste.ms/registries/anaconda.org/packages/bioconductor-genomicalignments

Dependent Repos 27

ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)
  • 1.18.1 containers/qiime2-2019.10/environment.yml

Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago

brucemoran/tumour_only
Tumour-only DNA sequencing analysis
  • 1.26.0 environment.yaml

Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

casrssk/WGS-analysis-in-C_trachomatis
  • 1.22.0 linux/sample/envs/environment.yml

Size: 7.39 MB - Last synced: 4 months ago - Pushed: about 2 years ago

lfnothias/qiime2
  • 1.26.0.* environment.yml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

stianlagstad/chimeraviz
chimeraviz is an R package that automates the creation of chimeric RNA visualizations.
  • environment.yml

Size: 2.9 MB - Last synced: 27 days ago - Pushed: 6 months ago

broadinstitute/malaria-amplicon-pipeline
  • 1.22.0.* environment.yml

Size: 171 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

evoosa/16S_bacteria_detector
Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms
  • 1.18.1 src/environment.yml

Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

quadram-institute-bioscience/dadaist2
Dadaist2 🟹 Highway to R
  • 1.26.0 lab/class/environment.yml

Size: 39.4 MB - Last synced: 3 months ago - Pushed: 3 months ago

yangmqglobe/dapipe
è‡Ș抹挖的 ATAC-Seq ćˆ†æžæ”çš‹
  • 1.26.0.* environment.yml

Size: 193 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

andrealauria104/ngsRtools
A Suite of R Packages for NGS-based Epigenomic Data Analysis.
  • 1.22.0.* data/environment.yml

Size: 714 KB - Last synced: 27 days ago - Pushed: about 1 year ago

brucemoran/somatic_n-of-1
Somatic-Germline n-of-1 DNAseq Analysis
  • environment.yaml

Size: 317 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

bokulich-lab/advanced-comp-bio-tutorial
Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022
  • 1.26.0 environment.yml

Size: 77.9 MB - Last synced: 12 months ago - Pushed: 12 months ago

salzman-lab/nf-sicilian
  • 1.22.0.* environment.yml

Size: 2.35 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

omicsclass/biodocker
docker images for bioinformatics
  • 1.18.1.* ampliseq-q2/environment.yml

Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago

greenelab/2022-cf-sputum
Analysis of cystic fibrosis sputum RNA-seq samples for discovery of interesting gene expression pathways
  • 1.22.0 environment.yml

Size: 4.92 MB - Last synced: 9 months ago - Pushed: over 1 year ago

kevinpryan/caf-subtype-analysis
  • 1.30.0 environment.yml

Size: 56.9 MB - Last synced: 8 months ago - Pushed: 8 months ago

mr-eyes/denovo-rnaseq
De novo assembly, Differential gene expression, and annotation workflow
  • 1.30.0 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

NatPombubpa/Qiime2_2022.8_binder
Qiime2_2022.8_binder test
  • 1.30.0.* environment.yml

Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago

LankyCyril/merip-seq-2019
  • 1.16.0 environment.yaml

Size: 531 KB - Last synced: over 1 year ago

gagneurlab/transmicron
  • 1.28.0.* environment.yml

Size: 16.7 MB - Last synced: 5 days ago - Pushed: over 1 year ago

russHyde/bfx_201909
Statistical Bioinformatics presentation
  • 1.18.1.* envs/environment.yml

Size: 327 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020
  • 1.18.1 environment.yml

Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago

MikeTrizna/binder-qiime
Testing if qiime can be installed and used in Binder
  • 1.18.1.* environment.yml

Size: 6.84 KB - Last synced: about 2 months ago - Pushed: about 5 years ago

maizeumn/grn
Maize Gene regulatory network (MaizeGRN)
  • 1.26.0.* environment.yml

Size: 24.1 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

yangmqglobe/depipe
è‡Ș抹挖的 ChIP-Seq ćˆ†æžæ”çš‹
  • 1.26.0.* environment.yml

Size: 16.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago

asdcid/Genome_Assembly_Assessment
  • 1.20.1 environment.yml

Size: 39.4 MB - Last synced: about 1 year ago - Pushed: over 4 years ago

gongyh/containers
Series of containers
  • 1.18.1.* scgs/environment.yml

Size: 5.28 MB - Last synced: 28 days ago - Pushed: 11 months ago

mwang87/GNPS_Volatility_Notebooks
  • 1.18.1.* environment.yml

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

daewoooo/IntegrativePhasingPaper
Supplementary files for the study "Dense and accurate whole-chromosome haplotyping of individual genomes"
  • 1.10.0 environment.yml

Size: 7.65 MB - Last synced: 2 days ago - Pushed: over 6 years ago

Jacobog02/Maslenlab_Thesis
Thesis code repository for analysis of Illumina Bisulfite Sequencing data.
  • 1.22.0.* env/environment.yml

Size: 2.25 MB - Last synced: about 1 year ago - Pushed: over 3 years ago

Dayueban/ampliseq Fork of nf-core/ampliseq
16S rRNA amplicon sequencing analysis workflow using QIIME2
  • 1.14.1.* environment.yml

Size: 229 KB - Last synced: 10 months ago - Pushed: about 5 years ago

TeamPerie/Report_Daphne Fork of dvginneken/Reproduce_Thesis_InstitutCurie
  • 1.34.0 environment.yml

Size: 32.6 MB - Last synced: 10 months ago - Pushed: 10 months ago

davidecarlson/Snakemake_diff_gene_expr
Differential Gene Expression with Snakemake
  • 1.26.0 environment.yml

Size: 37.1 KB - Last synced: about 1 year ago - Pushed: almost 3 years ago

robert-altwasser/umi-processing
  • 1.34.0 env/environment.yml

Size: 340 KB - Last synced: 5 months ago - Pushed: 6 months ago

bioc/chimeraviz
This is a read-only mirror of the git repos at https://bioconductor.org
  • environment.yml

Size: 2.81 MB - Last synced: 13 days ago - Pushed: 13 days ago

quevedor2/mini_projects
Repository for mini projects that don't warrant a repo of their own
  • 1.26.0 PDAC_AhR/envs/environment.yaml

Size: 657 KB - Last synced: 11 days ago - Pushed: 12 days ago

WenfeiY/P.patens_geno_design
Python and R script for Physcomitrium patens genome design
  • 1.38.0 environment.yml

Size: 865 KB - Last synced: about 2 months ago - Pushed: about 2 months ago