perl-pathtools | conda | Package Usage

ifremer-bioinformatics/samba

Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

3.75 containers/qiime2-2019.10/environment.yml

Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago

brucemoran/tumour_only

Tumour-only DNA sequencing analysis

3.75 environment.yaml

Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

adenger/subpred3

Code for the manuscript "Optimized data set and feature construction for substrate prediction of membrane transporters"

3.75 environment.yml

Size: 50.6 MB - Last synced: 20 days ago - Pushed: 10 months ago

lfnothias/qiime2

3.75.* environment.yml

Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

rchapman2000/de-novo-assembly-pipeline

3.75 environment.yml

Size: 60.5 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

kircherlab/CADD-scripts

CADD scripts release for offline scoring. For more information about CADD, please visit our website

3.75 envs/environment.yml

Size: 2.02 MB - Last synced: 18 days ago - Pushed: 19 days ago

MPI-SHH-SummerSchool/dag-material

3.75.* Hands on Introduction to Ancient Microbiome Analysis/environment.yml

Size: 489 MB - Last synced: 9 months ago - Pushed: over 2 years ago

evoosa/16S_bacteria_detector

Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms

3.75 src/environment.yml

Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago

ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit

3.75.* environment.yaml

Size: 15.3 MB - Last synced: about 2 months ago - Pushed: about 2 months ago

bokulich-lab/advanced-comp-bio-tutorial

Hands-on demonstration of 16S rRNA gene sequence analysis for SysBio Advanced Block Course 2022

3.75 environment.yml

Size: 77.9 MB - Last synced: 12 months ago - Pushed: 12 months ago

kaspermunch/sap

Statistical Assignment Package

3.75 environment.yml

Size: 51.1 MB - Last synced: 7 months ago - Pushed: about 1 year ago

Bernt/MITOS

MITOS

3.75.* environment.yaml

Last synced: 14 days ago

omicsclass/biodocker

docker images for bioinformatics

3.75.* ampliseq-q2/environment.yml

Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago

ctlab/GScour

Genome-wide detection of positive selection

3.75 environment.yml

Size: 1.89 MB - Last synced: 28 days ago - Pushed: 11 months ago

mr-eyes/denovo-rnaseq

De novo assembly, Differential gene expression, and annotation workflow

3.75 environment.yml

Size: 1.79 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

scilifelab-lts/b_henriques-normark_1606

3.73 bianca-env/environment.yml
3.73 envs/environment.yaml

Size: 30.6 MB - Last synced: over 1 year ago

NatPombubpa/Qiime2_2022.8_binder

Qiime2_2022.8_binder test

3.75.* environment.yml

Size: 10.7 KB - Last synced: 9 months ago - Pushed: over 1 year ago

deconvolute/subgenome

Identification of druggable genes in pathogenic bacteria – subtractive genomics approach

3.75 environment.yml

Size: 10.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

fieldima/adequacy_of_PCMs Fork of phylo-lab-usc/fiels_workbench

This repository contains all the scripts for analyzing the adequacy of the most commonly used phylogenetic comparative models for gene expression datasets.

3.75 Normalization_Reanalysis/environment.yml

Size: 350 MB - Last synced: 11 months ago - Pushed: over 1 year ago

SteMIDIfactory/P-DOR

Quick and easy outbreak reconstruction pipeline

3.75 environment.yml

Size: 37.7 MB - Last synced: 3 months ago - Pushed: 8 months ago

duncanberger/nxf-BATQual

Bacterial genome assembly, annotation and typing pipeline.

3.75 environment.yaml

Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago

liaoherui/StrainAnalyze

StrainAnalyze: a user-friendly bioinformatics pipeline used to analyze given identified bacterial strains in short reads.

3.75 environment.yaml

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: about 1 year ago

neavemj/mappd

Metagenomic Analysis Pipeline for Pathogen Discovery

3.75 environment.yaml

Size: 924 KB - Last synced: 8 months ago - Pushed: 8 months ago

IanSudbery/alvarez_et_al

Code and other scripts for Alvarez-Beneyas et al 2020

3.75 environment.yml

Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago

greenkidneybean/bchb524_final

3.75 environment.yml

Size: 174 KB - Last synced: about 1 year ago - Pushed: over 4 years ago

MikeTrizna/binder-qiime

Testing if qiime can be installed and used in Binder

3.75.* environment.yml

Size: 6.84 KB - Last synced: about 2 months ago - Pushed: about 5 years ago

jaswindersingh2/RNAcmap2

Improved RNA homology detection and alignment by automatic iterative search in an expanded database

3.75 environment.yaml

Size: 345 MB - Last synced: about 1 year ago - Pushed: about 2 years ago

Hajibabaei-Lab/SCVUC_COI_metabarcode_pipeline

Snakemake bioinformatic pipeline to process COI mtDNA metabarcodes

3.75 environment.yml

Size: 352 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago

bfairkun/design-mpeseq-primers

For designing RT primers with blast search, tm constraints, etc

3.75 environment.yaml

Size: 28.3 KB - Last synced: 7 months ago - Pushed: almost 5 years ago

bfairkun/Comparative_eQTL

Primary data: Chimp eQTLs called from heart tissue samples

3.73 code/snakemake_workflow/envs/environment.yml

Size: 583 MB - Last synced: 9 months ago - Pushed: over 3 years ago

jackkamm/snippy-false-negatives

3.73 environment.yaml

Size: 4.88 KB - Last synced: about 1 year ago - Pushed: about 5 years ago

asdcid/Genome_Assembly_Assessment

3.73 environment.yml

Size: 39.4 MB - Last synced: about 1 year ago - Pushed: over 4 years ago

fomightez/blast29-binder

Repo for running command line-based BLASTv2.9 in Jupyter environment provided via Binder.

3.73.* environment.yml

Size: 539 KB - Last synced: 7 months ago - Pushed: over 4 years ago

AbeelLab/long-read-assembly-benchmark

3.75 environment.yml

Size: 7.68 MB - Last synced: 28 days ago - Pushed: over 1 year ago

transXpress/transXpress-nextflow

transXpress: a Nextflow pipeline for rapid de novo transcriptome assembly and annotation

3.75 environment.yml

Size: 47 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago

ErasmusMC-Bioinformatics/WeFaceNano

Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).

3.75 environment.yml

Size: 6.78 MB - Last synced: about 1 month ago - Pushed: about 3 years ago

mwang87/GNPS_Volatility_Notebooks

3.75.* environment.yml

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago

jhgille2/Transcriptome-length-discrepency-tool

Some code to (hopefully) help to resolve an issue where sequences in a BAM/SAM header have a different length indicated than what is indicated in both a gtf file and transcriptome file used in a common pipeline