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GitHub / bfairkun / design-mpeseq-primers
For designing RT primers with blast search, tm constraints, etc
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/bfairkun%2Fdesign-mpeseq-primers
Stars: 2
Forks: 0
Open Issues: 0
License: mit
Language: Python
Repo Size: 28.3 KB
Dependencies:
95
Created: over 5 years ago
Updated: about 2 years ago
Last pushed: almost 5 years ago
Last synced: 8 months ago
Files
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Readme
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Dependencies
environment.yaml
conda
- _libgcc_mutex 0.1
- bedtools 2.28.0
- blast 2.9.0
- bzip2 1.0.6
- ca-certificates 2019.6.16
- certifi 2019.6.16
- curl 7.64.1
- entrez-direct 11.0
- expat 2.2.5
- krb5 1.16.3
- libcurl 7.64.1
- libdeflate 1.0
- libedit 3.1.20170329
- libffi 3.2.1
- libgcc-ng 9.1.0
- libssh2 1.8.2
- libstdcxx-ng 9.1.0
- ncurses 6.1
- openssl 1.1.1b
- pcre 8.41
- perl 5.26.2
- perl-app-cpanminus 1.7044
- perl-archive-tar 2.32
- perl-base 2.23
- perl-business-isbn 3.004
- perl-business-isbn-data 20140910.003
- perl-carp 1.38
- perl-common-sense 3.74
- perl-compress-raw-bzip2 2.086
- perl-compress-raw-zlib 2.086
- perl-constant 1.33
- perl-data-dumper 2.173
- perl-digest-hmac 1.03
- perl-digest-md5 2.55
- perl-encode 2.88
- perl-encode-locale 1.05
- perl-exporter 5.72
- perl-exporter-tiny 1.002001
- perl-extutils-makemaker 7.36
- perl-file-listing 6.04
- perl-file-path 2.16
- perl-file-temp 0.2304
- perl-html-parser 3.72
- perl-html-tagset 3.20
- perl-html-tree 5.07
- perl-http-cookies 6.04
- perl-http-daemon 6.01
- perl-http-date 6.02
- perl-http-message 6.18
- perl-http-negotiate 6.01
- perl-io-compress 2.086
- perl-io-html 1.001
- perl-io-socket-ssl 2.066
- perl-io-zlib 1.10
- perl-json 4.02
- perl-json-xs 2.34
- perl-libwww-perl 6.39
- perl-list-moreutils 0.428
- perl-list-moreutils-xs 0.428
- perl-lwp-mediatypes 6.04
- perl-lwp-protocol-https 6.07
- perl-mime-base64 3.15
- perl-mozilla-ca 20180117
- perl-net-http 6.19
- perl-net-ssleay 1.88
- perl-ntlm 1.09
- perl-parent 0.236
- perl-pathtools 3.75
- perl-scalar-list-utils 1.50
- perl-socket 2.027
- perl-storable 3.15
- perl-test-requiresinternet 0.05
- perl-time-local 1.28
- perl-try-tiny 0.30
- perl-types-serialiser 1.0
- perl-uri 1.76
- perl-www-robotrules 6.02
- perl-xml-namespacesupport 1.12
- perl-xml-parser 2.44
- perl-xml-sax 1.02
- perl-xml-sax-base 1.09
- perl-xml-sax-expat 0.51
- perl-xml-simple 2.25
- perl-xsloader 0.24
- pip 19.1.1
- primer3 2.4.1a
- python 3.6.7
- readline 8.0
- samtools 1.9
- setuptools 41.0.1
- sqlite 3.28.0
- tk 8.6.9
- wheel 0.33.4
- xz 5.2.4
- zlib 1.2.11