perl-xml-simple | conda | Package Usage

ifremer-bioinformatics/samba

Standardized and Automated MetaBarcoding Analyses workflow (Mirror)

2.25 containers/qiime2-2019.10/environment.yml

Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago

brucemoran/tumour_only

Tumour-only DNA sequencing analysis

2.25 environment.yaml

Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

lfnothias/qiime2

2.25.* environment.yml

Size: 21.5 KB - Last synced: over 1 year ago - Pushed: over 3 years ago

kircherlab/CADD-scripts

CADD scripts release for offline scoring. For more information about CADD, please visit our website

2.25 envs/environment.yml

Size: 2.02 MB - Last synced: 16 days ago - Pushed: about 1 month ago

MPI-SHH-SummerSchool/dag-material

2.25.* Hands on Introduction to Ancient Microbiome Analysis/environment.yml

Size: 489 MB - Last synced: 9 months ago - Pushed: almost 3 years ago

bihealth/digestiflow-demux

:spaghetti: Digestiflow Demultiplexing Tool

digestiflow_demux/wrappers/bcl2fastq/environment.yaml

Size: 159 KB - Last synced: about 2 months ago - Pushed: about 2 years ago

evoosa/16S_bacteria_detector

Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms

2.25 src/environment.yml

Size: 97.4 MB - Last synced: over 1 year ago - Pushed: about 3 years ago

JaneliaSciComp/box

Code for flyvisionbox. Supercedes flyvisionbox repo.

environment.yml

Size: 8.55 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

omicsclass/biodocker

docker images for bioinformatics

2.25.* ampliseq-q2/environment.yml

Size: 59.2 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

ctlab/GScour

Genome-wide detection of positive selection

2.25 environment.yml

Size: 1.89 MB - Last synced: 18 days ago - Pushed: almost 1 year ago

rwanwork/sam2irs

sam2irs is a program for calculating intron retention scores (IRS') using input in the sequence alignment/map (SAM) format.

2.25 environment.yml

Size: 155 KB - Last synced: over 1 year ago - Pushed: almost 2 years ago

bshifaw/long-read-pipelines Fork of broadinstitute/long-read-pipelines

Long read production pipelines

2.25 docker/lr-cloud-downloader/environment.yml

Size: 94.9 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

computational-chemical-biology/cis_reg

2.25 environment.yml

Size: 16.2 MB - Last synced: over 1 year ago - Pushed: over 1 year ago

duncanberger/nxf-BATQual

Bacterial genome assembly, annotation and typing pipeline.

2.25 environment.yaml

Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago

liaoherui/StrainAnalyze

StrainAnalyze: a user-friendly bioinformatics pipeline used to analyze given identified bacterial strains in short reads.

2.25 environment.yaml

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago

neavemj/mappd

Metagenomic Analysis Pipeline for Pathogen Discovery

2.25 environment.yaml

Size: 924 KB - Last synced: 9 months ago - Pushed: 9 months ago

IanSudbery/alvarez_et_al

Code and other scripts for Alvarez-Beneyas et al 2020

2.25 environment.yml

Size: 41.2 MB - Last synced: 10 months ago - Pushed: over 2 years ago

bioinformatics-lab/scratch

2.22 environment.yml

Size: 10.8 MB - Last synced: over 1 year ago - Pushed: about 6 years ago

bioinformatics-lab/BioDragon

2.22 environment.yml

Size: 10.9 MB - Last synced: over 1 year ago - Pushed: over 6 years ago

Hajibabaei-Lab/SCVUC_COI_metabarcode_pipeline

Snakemake bioinformatic pipeline to process COI mtDNA metabarcodes

2.25 environment.yml

Size: 352 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago

bfairkun/design-mpeseq-primers

For designing RT primers with blast search, tm constraints, etc

2.25 environment.yaml

Size: 28.3 KB - Last synced: 7 months ago - Pushed: almost 5 years ago

bfairkun/Comparative_eQTL

Primary data: Chimp eQTLs called from heart tissue samples

2.25 code/snakemake_workflow/envs/environment.yml

Size: 583 MB - Last synced: 10 months ago - Pushed: over 3 years ago

jackkamm/snippy-false-negatives

2.25 environment.yaml

Size: 4.88 KB - Last synced: over 1 year ago - Pushed: over 5 years ago

yangmqglobe/depipe

自动化的 ChIP-Seq 分析流程

2.25.* environment.yml

Size: 16.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago

ErasmusMC-Bioinformatics/WeFaceNano

Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).

2.25 environment.yml

Size: 6.78 MB - Last synced: 2 months ago - Pushed: about 3 years ago

mwang87/GNPS_Volatility_Notebooks

2.25.* environment.yml

Size: 14.6 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago

qbicsoftware/r-container-lib

A collection of project-related Dockerfiles for a controlled R environment with defined R packages

2.25 projects/QTEST/environment.yml

Size: 150 KB - Last synced: 25 days ago - Pushed: about 3 years ago

oscarlr/IGenotyper_depr

2.25 environment.yml

Size: 4.9 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago

telatin/sequence-formats

2.25 libraries/perl/environment.yaml

Size: 31.3 KB - Last synced: over 1 year ago - Pushed: over 2 years ago

xie186/ViewBS

ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data

environment.yaml

Size: 7.55 MB - Last synced: 7 months ago - Pushed: 12 months ago

ZarnackGroup/Calcifer

2.25 environment.yml

Size: 896 KB - Last synced: about 2 months ago - Pushed: 6 months ago

snizam001/greenPipes

2.25 environment.yaml

Size: 889 KB - Last synced: 18 days ago - Pushed: 18 days ago

yanhui-k/AnnoSmk

annotation base on snakemake

2.25 config/environment.yaml

Size: 34 MB - Last synced: 8 days ago - Pushed: 8 days ago

Ecosyste.ms: Repos

Package Usage: conda: perl-xml-simple

Dependent Repos 19