Ecosyste.ms: Repos
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Dependent Repos 18
ifremer-bioinformatics/samba
Standardized and Automated MetaBarcoding Analyses workflow (Mirror)- 3.20 containers/qiime2-2019.10/environment.yml
Size: 109 MB - Last synced: 11 months ago - Pushed: 11 months ago
brucemoran/tumour_only
Tumour-only DNA sequencing analysis- 3.20 environment.yaml
Size: 58.6 KB - Last synced: about 1 year ago - Pushed: over 1 year ago
lfnothias/qiime2
- 3.20.* environment.yml
Size: 21.5 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
kircherlab/CADD-scripts
CADD scripts release for offline scoring. For more information about CADD, please visit our website- 3.20 envs/environment.yml
Size: 2.02 MB - Last synced: 18 days ago - Pushed: 19 days ago
MPI-SHH-SummerSchool/dag-material
- 3.20.* Hands on Introduction to Ancient Microbiome Analysis/environment.yml
Size: 489 MB - Last synced: 9 months ago - Pushed: over 2 years ago
evoosa/16S_bacteria_detector
Gets the frequency of bacterias for 16S RRNA sequences using the available algorithms- 3.20 src/environment.yml
Size: 97.4 MB - Last synced: about 1 year ago - Pushed: about 3 years ago
omicsclass/biodocker
docker images for bioinformatics- 3.20.* ampliseq-q2/environment.yml
Size: 59.2 MB - Last synced: 11 months ago - Pushed: over 1 year ago
ctlab/GScour
Genome-wide detection of positive selection- 3.20 environment.yml
Size: 1.89 MB - Last synced: 28 days ago - Pushed: 11 months ago
rwanwork/sam2irs
sam2irs is a program for calculating intron retention scores (IRS') using input in the sequence alignment/map (SAM) format.- 3.20 environment.yml
Size: 155 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago
deconvolute/subgenome
Identification of druggable genes in pathogenic bacteria – subtractive genomics approach- 3.20 environment.yml
Size: 10.6 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
bshifaw/long-read-pipelines Fork of broadinstitute/long-read-pipelines
Long read production pipelines- 3.20 docker/lr-cloud-downloader/environment.yml
Size: 94.9 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
computational-chemical-biology/cis_reg
- 3.20 environment.yml
Size: 16.2 MB - Last synced: about 1 year ago - Pushed: over 1 year ago
duncanberger/nxf-BATQual
Bacterial genome assembly, annotation and typing pipeline.- 3.20 environment.yaml
Size: 321 KB - Last synced: 10 months ago - Pushed: 10 months ago
liaoherui/StrainAnalyze
StrainAnalyze: a user-friendly bioinformatics pipeline used to analyze given identified bacterial strains in short reads.- 3.20 environment.yaml
Size: 14.6 KB - Last synced: about 1 year ago - Pushed: about 1 year ago
neavemj/mappd
Metagenomic Analysis Pipeline for Pathogen Discovery- 3.20 environment.yaml
Size: 924 KB - Last synced: 8 months ago - Pushed: 8 months ago
IanSudbery/alvarez_et_al
Code and other scripts for Alvarez-Beneyas et al 2020- 3.20 environment.yml
Size: 41.2 MB - Last synced: 9 months ago - Pushed: over 2 years ago
bioinformatics-lab/BioDragon
- 3.20 environment.yml
Size: 10.9 MB - Last synced: about 1 year ago - Pushed: over 6 years ago
bioinformatics-lab/scratch
- 3.20 environment.yml
Size: 10.8 MB - Last synced: about 1 year ago - Pushed: about 6 years ago
greenkidneybean/bchb524_final
- 3.20 environment.yml
Size: 174 KB - Last synced: about 1 year ago - Pushed: over 4 years ago
Hajibabaei-Lab/SCVUC_COI_metabarcode_pipeline
Snakemake bioinformatic pipeline to process COI mtDNA metabarcodes- 3.20 environment.yml
Size: 352 KB - Last synced: about 1 year ago - Pushed: almost 4 years ago
bfairkun/design-mpeseq-primers
For designing RT primers with blast search, tm constraints, etc- 3.20 environment.yaml
Size: 28.3 KB - Last synced: 7 months ago - Pushed: almost 5 years ago
bfairkun/Comparative_eQTL
Primary data: Chimp eQTLs called from heart tissue samples- 3.20 code/snakemake_workflow/envs/environment.yml
Size: 583 MB - Last synced: 9 months ago - Pushed: over 3 years ago
jackkamm/snippy-false-negatives
- 3.20 environment.yaml
Size: 4.88 KB - Last synced: about 1 year ago - Pushed: about 5 years ago
yangmqglobe/depipe
自动化的 ChIP-Seq 分析流程- 3.20.* environment.yml
Size: 16.7 MB - Last synced: about 1 year ago - Pushed: about 1 year ago
ErasmusMC-Bioinformatics/WeFaceNano
Nanopore plasmid pipeline (FAST5 basecalling, assembly, plasmid identification and antimicrobial resistance genes identification).- 3.20 environment.yml
Size: 6.78 MB - Last synced: about 1 month ago - Pushed: about 3 years ago
mwang87/GNPS_Volatility_Notebooks
- 3.20.* environment.yml
Size: 14.6 KB - Last synced: about 1 year ago - Pushed: over 3 years ago
jhgille2/Transcriptome-length-discrepency-tool
Some code to (hopefully) help to resolve an issue where sequences in a BAM/SAM header have a different length indicated than what is indicated in both a gtf file and transcriptome file used in a common pipeline- 3.20 environment.yml
Size: 32.2 KB - Last synced: about 1 year ago - Pushed: about 1 year ago
qbicsoftware/r-container-lib
A collection of project-related Dockerfiles for a controlled R environment with defined R packages- 3.20 projects/QTEST/environment.yml
Size: 150 KB - Last synced: 1 day ago - Pushed: about 3 years ago
oscarlr/IGenotyper_depr
- 3.20 environment.yml
Size: 4.9 MB - Last synced: about 1 year ago - Pushed: almost 3 years ago
telatin/sequence-formats
- 3.20 libraries/perl/environment.yaml
Size: 31.3 KB - Last synced: about 1 year ago - Pushed: over 2 years ago
xie186/ViewBS
ViewBS - a powerful toolkit for visualization of high-throughput bisulfite sequencing data- environment.yaml
Size: 7.55 MB - Last synced: 7 months ago - Pushed: 11 months ago
ZarnackGroup/Calcifer
- 3.20 environment.yml
Size: 896 KB - Last synced: 27 days ago - Pushed: 6 months ago
unicorn-23/GwasWA
- 3.20 environment.yml
Size: 75.5 MB - Last synced: 5 months ago - Pushed: 5 months ago
f1lem0n/RNAnalyze
- 3.20.* environment.yaml
Size: 8.24 MB - Last synced: 12 days ago - Pushed: 14 days ago
snizam001/greenPipes
- 3.20 environment.yaml
Size: 1.07 MB - Last synced: about 14 hours ago - Pushed: 1 day ago