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GitHub / marchoeppner / eutaxpro
Taxonomic profiling of eukaroyte genomes using amplicon sequencing
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/marchoeppner%2Feutaxpro
Stars: 0
Forks: 0
Open Issues: 0
License: gpl-3.0
Language: Nextflow
Repo Size: 842 KB
Dependencies:
41
Created: 3 months ago
Updated: about 1 month ago
Last pushed: about 1 month ago
Last synced: about 1 month ago
Files
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Readme
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Dependencies
.github/workflows/linting.yml
actions
- actions/checkout v4 composite
- actions/setup-node v4 composite
environment.yml
conda
- fastp 0.23.1.*
- sed 4.7.*
- chopper 0.7.0.*
- cutadapt 4.6.*
- fastp 0.23.4.*
- sed 4.7.*
- perl 5.32.*
- perl-json-xs 4.03.*
- perl 5.32.*
- perl-json-parse 0.62.*
- multiqc 1.19.*
- porechop_abi 0.5.0.*
- ptrimmer 1.3.3.*
- samtools 1.19.2.*
- samtools 1.19.2.*
- samtools 1.19.2.*
- samtools 1.19.2.*
- samtools 1.19.2.*
- samtools 1.19.2.*
- samtools 1.19.2.*
- vsearch 2.27.0.*
- vsearch 2.27.0.*
- vsearch 2.27.0.*
- vsearch 2.27.0.*
- vsearch 2.27.0.*
- vsearch 2.27.0.*
- vsearch 2.27.0.*
- vsearch 2.27.0.*
- vsearch 2.27.0.*
- vsearch 2.27.0.*
- vsearch 2.27.0.*
- vsearch 2.27.0.*