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GitHub / mbosio85 / nf-core-rnaseq

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mbosio85%2Fnf-core-rnaseq

Stars: 0
Forks: 0
Open Issues: 0

License: mit
Language: Nextflow
Repo Size: 48.9 MB
Dependencies: 31

Created: over 4 years ago
Updated: over 4 years ago
Last pushed: over 4 years ago
Last synced: over 1 year ago

Files

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Readme

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Dependencies

.github/workflows/branch.yml actions

actions/checkout v1 composite

.github/workflows/ci.yml actions

actions/checkout v1 composite

.github/workflows/linting.yml actions

actions/checkout v1 composite
actions/setup-node v1 composite
actions/setup-python v1 composite

environment.yml conda

bioconductor-dupradar 1.14.0.*
bioconductor-edger 3.26.5.*
bioconductor-summarizedexperiment 1.14.0.*
bioconductor-tximeta 1.2.2.*
deeptools 3.3.1.*
fastqc 0.11.8.*
gffread 0.11.4.*
hisat2 2.1.0.*
matplotlib 3.0.3.*
multiqc 1.7.*
picard 2.21.1.*
preseq 2.0.3.*
qualimap 2.2.2c.*
r-base 3.6.1.*
r-data.table 1.12.4.*
r-gplots 3.0.1.1.*
r-markdown 1.1.*
rseqc 3.0.1.*
salmon 0.14.2.*
samtools 1.9.*
sortmerna 2.1b.*
star 2.6.1d.*
stringtie 2.0.*
subread 1.6.4.*
trim-galore 0.6.4.*

Dockerfile docker

nfcore/base 1.7 build